https://gitweb.dealii.org/

Wolfgang Bangerth [Tue, 15 Jan 2013 20:47:38 +0000 (20:47 +0000)]

Add assert.

git-svn-id: https://svn.dealii.org/trunk@28072 0785d39b-7218-0410-832d-ea1e28bc413d

Wolfgang Bangerth [Tue, 15 Jan 2013 20:47:00 +0000 (20:47 +0000)]

Fix off-by-one error in previous commit.

git-svn-id: https://svn.dealii.org/trunk@28071 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 15 Jan 2013 15:24:18 +0000 (15:24 +0000)]

Avoid dereferencing the past-the-end iterator.

git-svn-id: https://svn.dealii.org/trunk@28070 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 15 Jan 2013 15:21:58 +0000 (15:21 +0000)]

Cosmetic changes.

git-svn-id: https://svn.dealii.org/trunk@28069 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Tue, 15 Jan 2013 14:23:43 +0000 (14:23 +0000)]

Fix minor doxygen typo.

git-svn-id: https://svn.dealii.org/trunk@28068 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 15 Jan 2013 14:21:56 +0000 (14:21 +0000)]

Talk about a future removal of functions.

git-svn-id: https://svn.dealii.org/trunk@28067 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 15 Jan 2013 14:20:49 +0000 (14:20 +0000)]

Remove now unused variable.

git-svn-id: https://svn.dealii.org/trunk@28066 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 15 Jan 2013 14:20:04 +0000 (14:20 +0000)]

Remove unnecessary semicolon.

git-svn-id: https://svn.dealii.org/trunk@28065 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Tue, 15 Jan 2013 10:25:01 +0000 (10:25 +0000)]

Fix annoying revert bug spotted by tests.

git-svn-id: https://svn.dealii.org/trunk@28063 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Tue, 15 Jan 2013 10:24:12 +0000 (10:24 +0000)]

Remove use of depreceated function (parallelogram).

git-svn-id: https://svn.dealii.org/trunk@28062 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 15 Jan 2013 03:06:22 +0000 (03:06 +0000)]

Avoid more uses of deprecated functions.

git-svn-id: https://svn.dealii.org/trunk@28059 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 15 Jan 2013 03:00:39 +0000 (03:00 +0000)]

Avoid a silly use of SparseMatrix::global_entry.

git-svn-id: https://svn.dealii.org/trunk@28058 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 15 Jan 2013 02:57:37 +0000 (02:57 +0000)]

Replace one set of uses of a deprecated function.

git-svn-id: https://svn.dealii.org/trunk@28057 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 15 Jan 2013 02:50:11 +0000 (02:50 +0000)]

Doc updates.

git-svn-id: https://svn.dealii.org/trunk@28056 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 15 Jan 2013 02:49:44 +0000 (02:49 +0000)]

Avoid use of deprecated functions.

git-svn-id: https://svn.dealii.org/trunk@28055 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 15 Jan 2013 02:38:04 +0000 (02:38 +0000)]

Set properties.

git-svn-id: https://svn.dealii.org/trunk@28054 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 15 Jan 2013 02:36:39 +0000 (02:36 +0000)]

Update output files.

git-svn-id: https://svn.dealii.org/trunk@28053 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Mon, 14 Jan 2013 22:34:13 +0000 (22:34 +0000)]

increase output precision (this will temporarily break a few tests)

git-svn-id: https://svn.dealii.org/trunk@28052 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 14 Jan 2013 19:21:50 +0000 (19:21 +0000)]

Adjust output file.

git-svn-id: https://svn.dealii.org/trunk@28051 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 14 Jan 2013 19:20:28 +0000 (19:20 +0000)]

Make run in parallel, this time for sure.

git-svn-id: https://svn.dealii.org/trunk@28050 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Mon, 14 Jan 2013 18:03:40 +0000 (18:03 +0000)]

Delete unnecessary code.

git-svn-id: https://svn.dealii.org/trunk@28049 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 14 Jan 2013 14:55:18 +0000 (14:55 +0000)]

Test now also works in parallel.

git-svn-id: https://svn.dealii.org/trunk@28048 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 14 Jan 2013 14:10:11 +0000 (14:10 +0000)]

Patch by Daniel Arndt: add is_local_range() to all vector classes. Use it in the ConstraintMatrix.

git-svn-id: https://svn.dealii.org/trunk@28047 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 14 Jan 2013 13:36:38 +0000 (13:36 +0000)]

Deprecate one function, introduce alternative interface.

git-svn-id: https://svn.dealii.org/trunk@28045 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Mon, 14 Jan 2013 10:44:51 +0000 (10:44 +0000)]

Rejuggle parallelepiped tests.

git-svn-id: https://svn.dealii.org/trunk@28044 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Mon, 14 Jan 2013 10:44:14 +0000 (10:44 +0000)]

Change parallelepiped interface to something sensible: Point<dim>()[dim] not Tensor<2,dim>.

git-svn-id: https://svn.dealii.org/trunk@28043 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Mon, 14 Jan 2013 08:19:13 +0000 (08:19 +0000)]

Remove unused variables.

git-svn-id: https://svn.dealii.org/trunk@28042 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Jan 2013 20:06:06 +0000 (20:06 +0000)]

Deprecate the functions that condense a linear system by shrinking its size
and copying everything into a second set of objects.

git-svn-id: https://svn.dealii.org/trunk@28041 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Jan 2013 20:03:55 +0000 (20:03 +0000)]

Remove more uses of a deprecated function.

git-svn-id: https://svn.dealii.org/trunk@28040 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Jan 2013 19:59:59 +0000 (19:59 +0000)]

Remove some uses of a deprecated function.

git-svn-id: https://svn.dealii.org/trunk@28039 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Sun, 13 Jan 2013 16:07:24 +0000 (16:07 +0000)]

Use void() not Assert(NULL) to supress compiler warning.

git-svn-id: https://svn.dealii.org/trunk@28036 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Sun, 13 Jan 2013 00:14:22 +0000 (00:14 +0000)]

Ignore generated test files.

git-svn-id: https://svn.dealii.org/trunk@28035 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Sun, 13 Jan 2013 00:10:53 +0000 (00:10 +0000)]

Two tests for generating a parallelepiped grid.

git-svn-id: https://svn.dealii.org/trunk@28034 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Sun, 13 Jan 2013 00:08:43 +0000 (00:08 +0000)]

Generate a parallelepiped grid in 1d, 2d, and 3d.

git-svn-id: https://svn.dealii.org/trunk@28033 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 11 Jan 2013 21:07:43 +0000 (21:07 +0000)]

cut size of output, because numdiff chokes on the files

git-svn-id: https://svn.dealii.org/trunk@28030 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 11 Jan 2013 20:53:06 +0000 (20:53 +0000)]

add some spaces to make numdiff happy

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Timo Heister [Fri, 11 Jan 2013 18:41:46 +0000 (18:41 +0000)]

fix parallel mg test

git-svn-id: https://svn.dealii.org/trunk@28028 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 11 Jan 2013 18:29:38 +0000 (18:29 +0000)]

fix deprecated warning

git-svn-id: https://svn.dealii.org/trunk@28027 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 11 Jan 2013 18:28:58 +0000 (18:28 +0000)]

fix mg_03 test

git-svn-id: https://svn.dealii.org/trunk@28026 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 11 Jan 2013 18:27:25 +0000 (18:27 +0000)]

fix multigrid unit tests

git-svn-id: https://svn.dealii.org/trunk@28025 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 11 Jan 2013 18:27:08 +0000 (18:27 +0000)]

allow multigrid for distributed Triangulation with a constructor flag. Still work in progress, but this makes the unit tests work.

git-svn-id: https://svn.dealii.org/trunk@28024 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Fri, 11 Jan 2013 13:48:29 +0000 (13:48 +0000)]

Deal with some outstanding documentation issues (missing classes in doxygen documentation).

git-svn-id: https://svn.dealii.org/trunk@28022 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Fri, 11 Jan 2013 13:39:49 +0000 (13:39 +0000)]

Remove now obsolete code.

git-svn-id: https://svn.dealii.org/trunk@28021 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Fri, 11 Jan 2013 13:36:14 +0000 (13:36 +0000)]

Replace SparseMatrix::global_entry by iterators.

git-svn-id: https://svn.dealii.org/trunk@28020 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 11 Jan 2013 02:48:08 +0000 (02:48 +0000)]

remove cmp files that are out of date

git-svn-id: https://svn.dealii.org/trunk@28014 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 11 Jan 2013 02:45:34 +0000 (02:45 +0000)]

optionally allow running the testsuite with numdiff

git-svn-id: https://svn.dealii.org/trunk@28013 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Jan 2013 01:15:32 +0000 (01:15 +0000)]

Put the attribute on the RefinementListener class rather than all the
member functions. This has the advantage that we can cleanly compile
the library.

git-svn-id: https://svn.dealii.org/trunk@28012 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Jan 2013 00:54:24 +0000 (00:54 +0000)]

Update a couple comments.

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Wolfgang Bangerth [Fri, 11 Jan 2013 00:40:50 +0000 (00:40 +0000)]

Avoid a deprecated function.

git-svn-id: https://svn.dealii.org/trunk@28010 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Jan 2013 00:25:48 +0000 (00:25 +0000)]

Avoid use of deprecated function.

git-svn-id: https://svn.dealii.org/trunk@28009 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Thu, 10 Jan 2013 16:31:06 +0000 (16:31 +0000)]

Improve a few comments.

git-svn-id: https://svn.dealii.org/trunk@28005 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Jan 2013 22:32:21 +0000 (22:32 +0000)]

Remove generated file.

git-svn-id: https://svn.dealii.org/trunk@28002 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Wed, 9 Jan 2013 21:17:46 +0000 (21:17 +0000)]

Fix a misplaced curly bracket.

git-svn-id: https://svn.dealii.org/trunk@28001 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Wed, 9 Jan 2013 20:52:56 +0000 (20:52 +0000)]

Distinguish between Generalized and Jacobi Davidson solvers. Keep backward comparibility for deal.II 7.3

git-svn-id: https://svn.dealii.org/trunk@28000 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 9 Jan 2013 19:45:53 +0000 (19:45 +0000)]

mention new FE_Q_DG0 finite element in changes.

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Wolfgang Bangerth [Wed, 9 Jan 2013 17:19:37 +0000 (17:19 +0000)]

Remove currently unsupported tests.

git-svn-id: https://svn.dealii.org/trunk@27998 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Jan 2013 17:18:38 +0000 (17:18 +0000)]

New test.

git-svn-id: https://svn.dealii.org/trunk@27997 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Jan 2013 16:42:51 +0000 (16:42 +0000)]

Fix a problem where we needed to call compress() in ConstraintMatrix::condense.

git-svn-id: https://svn.dealii.org/trunk@27996 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 9 Jan 2013 14:18:16 +0000 (14:18 +0000)]

add space after = in test

git-svn-id: https://svn.dealii.org/trunk@27995 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Wed, 9 Jan 2013 08:29:00 +0000 (08:29 +0000)]

Replace x_to_the_dim by Utilities::fixed_power

git-svn-id: https://svn.dealii.org/trunk@27993 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 9 Jan 2013 05:10:56 +0000 (05:10 +0000)]

workaround for warning 'deleting object of polymorphic class type boost::error_info<...> which has non-virtual destructor'

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Wolfgang Bangerth [Wed, 9 Jan 2013 04:23:18 +0000 (04:23 +0000)]

Set file properties properly.

git-svn-id: https://svn.dealii.org/trunk@27991 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Jan 2013 04:21:08 +0000 (04:21 +0000)]

Provide standard file header.

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Wolfgang Bangerth [Wed, 9 Jan 2013 04:19:43 +0000 (04:19 +0000)]

Clean up code slightly.

git-svn-id: https://svn.dealii.org/trunk@27989 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Jan 2013 00:31:54 +0000 (00:31 +0000)]

Two more.

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Wolfgang Bangerth [Tue, 8 Jan 2013 23:32:10 +0000 (23:32 +0000)]

Use a better way to identify the end of a row.

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Wolfgang Bangerth [Tue, 8 Jan 2013 21:36:23 +0000 (21:36 +0000)]

Clarify a statement.

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Wolfgang Bangerth [Tue, 8 Jan 2013 21:32:23 +0000 (21:32 +0000)]

Avoid more uses of a deprecated function.

git-svn-id: https://svn.dealii.org/trunk@27984 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 8 Jan 2013 21:23:13 +0000 (21:23 +0000)]

Replace calls to deprecated functions.

git-svn-id: https://svn.dealii.org/trunk@27983 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 8 Jan 2013 21:19:57 +0000 (21:19 +0000)]

Replace two untested and undocumented functions by a call to MatrixTools::apply_boundary_values.

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Wolfgang Bangerth [Tue, 8 Jan 2013 21:01:19 +0000 (21:01 +0000)]

Mark two functions as deprecated.

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Wolfgang Bangerth [Tue, 8 Jan 2013 19:58:12 +0000 (19:58 +0000)]

Undeprecate a couple of functions that aren't by themselves evil, just slow or lead to big memory consumption. There are good reasons to use them in some places, though. Add a few notes.

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Wolfgang Bangerth [Tue, 8 Jan 2013 19:53:01 +0000 (19:53 +0000)]

Remove the last two uses of a deprecated function from this file.

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Wolfgang Bangerth [Tue, 8 Jan 2013 19:36:34 +0000 (19:36 +0000)]

Fix the other places with pow(...) as well.

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Wolfgang Bangerth [Tue, 8 Jan 2013 19:26:22 +0000 (19:26 +0000)]

Mark a couple of variables as const.

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Wolfgang Bangerth [Tue, 8 Jan 2013 19:25:25 +0000 (19:25 +0000)]

Avoid a compiler error with gcc 4.1.

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Wolfgang Bangerth [Tue, 8 Jan 2013 19:05:05 +0000 (19:05 +0000)]

Simplify function. The shortcut doesn't reliably work because it assumes that
neither of the two iterators is past-the-end. If we were to check this in the
shortcut, then this would negate the benefits of the shortcut to begin with.

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Timo Heister [Tue, 8 Jan 2013 17:12:22 +0000 (17:12 +0000)]

reintegrate branch branch_feqdg0

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Wolfgang Bangerth [Tue, 8 Jan 2013 15:28:02 +0000 (15:28 +0000)]

Another baby step towards getting rid of global_entry().

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Wolfgang Bangerth [Tue, 8 Jan 2013 03:48:57 +0000 (03:48 +0000)]

First step towards getting rid of the last occurrence of SparseMatrix::global_value.

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Wolfgang Bangerth [Tue, 8 Jan 2013 03:35:51 +0000 (03:35 +0000)]

Finally fix that bugger of a bug...

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Wolfgang Bangerth [Tue, 8 Jan 2013 03:21:43 +0000 (03:21 +0000)]

New test, to figure out what's going on in matrix_tools.cc these days...

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Wolfgang Bangerth [Mon, 7 Jan 2013 21:45:26 +0000 (21:45 +0000)]

Fix code in a couple of places to avoid an assertion. There is another
problem somewhere, though.

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Wolfgang Bangerth [Mon, 7 Jan 2013 20:58:03 +0000 (20:58 +0000)]

Only clean up memory if PETSc hasn't done that itself yet.

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Wolfgang Bangerth [Mon, 7 Jan 2013 20:49:36 +0000 (20:49 +0000)]

More.

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Wolfgang Bangerth [Mon, 7 Jan 2013 18:52:34 +0000 (18:52 +0000)]

Finally make compile.

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Wolfgang Bangerth [Mon, 7 Jan 2013 15:04:06 +0000 (15:04 +0000)]

Avoid one more call to deprecated function.

git-svn-id: https://svn.dealii.org/trunk@27962 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Jan 2013 14:56:43 +0000 (14:56 +0000)]

Fix implementation of SparseMatrix::iterator::operator- for the general case. Add a test.

git-svn-id: https://svn.dealii.org/trunk@27961 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Jan 2013 14:37:45 +0000 (14:37 +0000)]

Try to avoid using something gcc 4.1.2 doesn't appear to understand.

git-svn-id: https://svn.dealii.org/trunk@27960 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Jan 2013 14:21:54 +0000 (14:21 +0000)]

Avoid use of deprecated function.

git-svn-id: https://svn.dealii.org/trunk@27959 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Jan 2013 14:15:01 +0000 (14:15 +0000)]

Rename an argument to a function to make its intent clearer.

git-svn-id: https://svn.dealii.org/trunk@27958 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Jan 2013 14:14:40 +0000 (14:14 +0000)]

Fix another case where a conversion to non-deprecated functions went wrong.

git-svn-id: https://svn.dealii.org/trunk@27957 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Jan 2013 04:35:12 +0000 (04:35 +0000)]

Avoid use of SparseMatrix::global_entry in one more place. Many more to come.

git-svn-id: https://svn.dealii.org/trunk@27956 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Jan 2013 04:34:50 +0000 (04:34 +0000)]

Add a bunch of functions to the iterator class.

git-svn-id: https://svn.dealii.org/trunk@27955 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Jan 2013 03:31:19 +0000 (03:31 +0000)]

Remove a few stray semicolons.

git-svn-id: https://svn.dealii.org/trunk@27954 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Jan 2013 03:30:43 +0000 (03:30 +0000)]

Fix an incorrect conversion to avoid a deprecated function.

git-svn-id: https://svn.dealii.org/trunk@27953 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Jan 2013 03:07:02 +0000 (03:07 +0000)]

Avoid use of deprecated function.

git-svn-id: https://svn.dealii.org/trunk@27952 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Jan 2013 01:13:37 +0000 (01:13 +0000)]

More avoidance of deprecated things.

git-svn-id: https://svn.dealii.org/trunk@27951 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Jan 2013 01:11:18 +0000 (01:11 +0000)]

Avoid use of deprecated numbers.

git-svn-id: https://svn.dealii.org/trunk@27950 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Jan 2013 01:06:51 +0000 (01:06 +0000)]

Fix an assertion that was incorrectly changed when converting deprecated
function calls.

git-svn-id: https://svn.dealii.org/trunk@27949 0785d39b-7218-0410-832d-ea1e28bc413d

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