Merge pull request #13824 from bangerth/ca-doc

Augment documentation of the consensus algorithm free functions.

Merge pull request #13830 from bangerth/doc

Better document ReferenceCell and the reference cell glossary entry.

Better document ReferenceCell and the reference cell glossary entry.

Merge pull request #13829 from kronbichler/reduce_header_inclusion

Remove some unneeded header inclusions

Merge pull request #13827 from tamiko/skip_boost_test

CMake: Skip expensive boost test

Merge pull request #13825 from bangerth/ca-decl

Fix the function declaration a doc string is attached to.

Merge pull request #13787 from drwells/sundials-ida-tolerance

Merge pull request #13831 from bangerth/rule-of-3

Provide a defaulted copy operator.

Provide a defaulted copy operator.

Merge pull request #13512 from gfcas/constant_modes_doc

Update constant_modes doc

Merge pull request #13769 from bangerth/ca-remove

Deprecate ConsensusAlgorithms::AnonymousProcess.

Merge pull request #13768 from bangerth/ca-template

Consensus Algorithms: Move template functions into .h file.

Remove some unneeded header inclusions

Merge pull request #13818 from tamiko/doxygen_quoting_issues

Step-40: Remove an unmatched single quote

Merge pull request #13815 from mschreter/json_demangle_2

ParameterHandler::print_parameters(): Demangle JSON

CMake: Skip expensive boost test

This has been finally fixed upstream sometime in late 2018 [1], and this
runtime check is very expensive. Let us skip it for a safe, good
version. I have chosen 1.74 semi randomly because it has been released
in 2020 and is the boost version found in Debian 11.

[1] https://github.com/boostorg/serialization/pull/79#issuecomment-439726837

Fix the function declaration a doc string is attached to.

Augment documentation of the consensus algorithm free functions.

Merge pull request #13812 from kronbichler/simplify_code

Remove unnecessary MPI barriers

Merge pull request #13811 from kronbichler/add_another_pack

Optimize Utilities::pack for std::vector<std::vector<trivial>>

Deprecate the ConsensusAlgorithms::AnonymousProcess class.

Consensus Algorithms: Move template functions into .h file.

Merge pull request #13798 from kronbichler/speedup_poly_eval

Provide function to evaluate polynomial on array of positions

Step-40: Remove an unmatched single quote

Merge pull request #13802 from kronbichler/simplify_grid_tools

Avoid CellDataTransferBuffer in GridTools::exchange_cell_data_to_ghosts

Merge pull request #13813 from kronbichler/fix_compile2

Utilities: Fix compile error on certain compilers

Provide function to evaluate polynomial on array of positions

Demangle json during output

Co-authored-by: Peter Munch <peterrmuench@gmail.com>

Merge pull request #13790 from kronbichler/simplify_reinit_shape_info

MatrixFree: Simplify initialization of ShapeInfo

Merge pull request #13800 from kronbichler/simplify_grid_partitioners

Slightly simplify setup of partitioners for global cell ids

Merge pull request #13809 from kronbichler/adjust_test_output

Adjust output of tests using PreconditionChebyshev

Utilities: Fix compile error on certain compilers

Merge pull request #13810 from simonsticko/assert_hypercube_quadrature_generator

Assert reference cell is hypercube in Discrete*QuadratureGenerator

Remove unnecessary MPI barriers

Optimize Utilities::pack for std::vector<std::vector<trivial>>

Avoid usage of CellDataTransferBuffer in GridTools::exchange_cell_data_to_ghosts

Assert reference cell is hypercube in Discrete*QuadratureGenerator

Slightly simplify setup of partitioners for global cell ids

Adjust output of tests using PreconditionChebyshev

Merge pull request #13788 from drwells/kinsol-sundials-6

Kinsol sundials 6

Merge pull request #13786 from drwells/arkode-sundials-6

Fix ARKODE for SUNDIALS 6.

Merge pull request #13791 from kronbichler/reduce_cost_index_owner

Merge pull request #13803 from drwells/fix-doc-typos-11

Merge pull request #13804 from marcfehling/citelist

Fix doxygen entry Chronopoulos1989.

Fix doxygen entry Chronopoulos1989.

Reduce cost to set up dictionary for compute_index_owner

MatrixFree: Simplify initialization of ShapeInfo

Fix some miscellaneous typos.

Merge pull request #13801 from kronbichler/speed_up_utilities_pack

Avoid a second copy in Utilities::pack for vector arguments

Avoid a second copy in Utilities::pack for vector arguments

Merge pull request #13796 from kronbichler/fix_test_novec_1

Fix two tests with vectorization disabled

Massively lower some IDA solver tolerances.

ida_02 presently fails with a numdiff difference of about 1e-6: this makes sense
since that's the provided solver tolerance. We can get consistent results by
making it a few orders of magnitude lower.

Use 'greater than or equal to' instead of 'not less than'.

Fix KINSOL for SUNDIALS 6.

Merge pull request #13797 from kronbichler/fix_test_novec_2

Fix bug in FEEvaluation without vectorization

Merge pull request #13799 from kronbichler/fix_compile

Fix compilation of Utilities::pack with std::vector<bool>

Fix compilation of Utilities::pack with std::vector<bool>

Merge pull request #13792 from kronbichler/chebyshev_power_iteration

PreconditionChebyshev: Implement power iteration for eigenvalue estimate

Merge pull request #13784 from bangerth/pack-unpack

Optimize pack()/unpack() for std::vector<T> with trivially copyable T.

Merge pull request #13795 from drwells/add-mpi-bool-instantiation

Add some missing MPI boolean instantiations.

Fix bug in FEEvaluation without vectorization

Fix two tests with vectorization disabled

Merge pull request #13642 from NiklasWik/piola_matrix_free

Matrix-free Piola transformation for affine cells

Add some missing MPI boolean instantiations.

Changelog

Add test case

PreconditionChebyshev: Implement power iteration for eigenvalue estimate

Merge pull request #13789 from gfcas/reinit-argument

Clearify LA::d::BlockVector::reinit input argument

Merge pull request #13611 from tjhei/add_big_mpi_compat

embed BigMPICompat library

Merge pull request #13780 from dealii/dependabot/github_actions/docker/build-push-action-3

Bump docker/build-push-action from 2 to 3

Merge pull request #13781 from dealii/dependabot/github_actions/actions/upload-artifact-3

Bump actions/upload-artifact from 1 to 3

Avoid copy paste

Fix documentation

Merge pull request #13777 from dealii/dependabot/github_actions/docker/login-action-2

Bump docker/login-action from 1 to 2

Merge pull request #13778 from dealii/dependabot/github_actions/docker/setup-buildx-action-2

Bump docker/setup-buildx-action from 1 to 2

Merge pull request #13779 from dealii/dependabot/github_actions/actions/cache-3

Bump actions/cache from 2 to 3

Merge pull request #13783 from tamiko/fix_oneapi

TBB oneAPI: make global_control object static

Clearify LA::d::BlockVector::reinit input argument

Add a missing MPI_InitFinalize.

This is now required in SUNDIALS 6 since SUNContext objects duplicate MPI
communicators.

Bump docker/build-push-action from 2 to 3

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 2 to 3.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](https://github.com/docker/build-push-action/compare/v2...v3)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Bump actions/upload-artifact from 1 to 3

Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 1 to 3.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](https://github.com/actions/upload-artifact/compare/v1...v3)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Bump actions/cache from 2 to 3

Bumps [actions/cache](https://github.com/actions/cache) from 2 to 3.
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](https://github.com/actions/cache/compare/v2...v3)

---
updated-dependencies:
- dependency-name: actions/cache
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Bump docker/login-action from 1 to 2

Bumps [docker/login-action](https://github.com/docker/login-action) from 1 to 2.
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](https://github.com/docker/login-action/compare/v1...v2)

---
updated-dependencies:
- dependency-name: docker/login-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Bump docker/setup-buildx-action from 1 to 2

Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 1 to 2.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](https://github.com/docker/setup-buildx-action/compare/v1...v2)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Merge pull request #13785 from drwells/ignore-dependabot-name

Add an exception for commits from dependabot.

Fix ARKODE for SUNDIALS 6.

Merge pull request #13776 from bangerth/copyright-2

Give a shell script a proper suffix.

Add an exception for commits from dependabot.

Add a changelog entry.

Optimize pack()/unpack() for std::vector<T> with trivially copyable T.

add a test

TBB oneAPI: make global_control object static

tbb::global_control is a class that affects the specified behavior of
tbb during its lifetime. Thus, in order to set a global thread limit for
tbb we have to maintain the object throughout the execution of the
program. We do this by maintaining a static std::unique_ptr.

A std::unique_ptr is a good choice here because tbb::global_control does
not provide a mechanism to override its setting - we can only delete the
old and replace it with a new one.

Merge pull request #13774 from marcfehling/dependabot

Added dependabot for github-actions.

Merge pull request #13775 from bangerth/copyright

Update copyright years.

Merge pull request #13721 from tjhei/step-40-no-limit-io

step-40: update IO section

Give a shell script a proper suffix.

Update copyright years.

Merge pull request #13765 from drwells/signed-tet-volume

Remove std::abs() from the tet volume calculation.

Merge pull request #13766 from drwells/mixed-mesh-volume

Implement pyramid volume and fix wedge volume.

Added dependabot for github-actions.

Merge pull request #13770 from gfcas/vector_tools_rhs

Minor code updates to create_right_hand_side