]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
6 years agoMerge pull request #5196 from asartori86/fix_sundials
Luca Heltai [Fri, 6 Oct 2017 12:59:25 +0000 (14:59 +0200)]
Merge pull request #5196 from asartori86/fix_sundials

fix sundials interface for NON-MPI installations

6 years agoMerge pull request #5202 from tcclevenger/mesh_loop
Daniel Arndt [Fri, 6 Oct 2017 08:26:34 +0000 (10:26 +0200)]
Merge pull request #5202 from tcclevenger/mesh_loop

Removing an unused variable in mesh_loop.h

6 years agoMerge pull request #5200 from drwells/constraintmatrix-improvements
Martin Kronbichler [Fri, 6 Oct 2017 07:17:29 +0000 (09:17 +0200)]
Merge pull request #5200 from drwells/constraintmatrix-improvements

ConstraintMatrix improvements

6 years agoAdd a finite-ness assertion. 5200/head
David Wells [Thu, 5 Oct 2017 20:32:48 +0000 (16:32 -0400)]
Add a finite-ness assertion.

6 years agoRealign some arguments.
David Wells [Thu, 5 Oct 2017 20:32:30 +0000 (16:32 -0400)]
Realign some arguments.

6 years agoPrefer VectorType to VEC.
David Wells [Thu, 5 Oct 2017 20:32:09 +0000 (16:32 -0400)]
Prefer VectorType to VEC.

6 years agoUpdate some comments for ConstraintMatrixData.
David Wells [Thu, 5 Oct 2017 20:26:00 +0000 (16:26 -0400)]
Update some comments for ConstraintMatrixData.

We no longer use shared pointers here.

6 years agoremove unused variable 5202/head
tcclevenger [Fri, 6 Oct 2017 01:36:11 +0000 (21:36 -0400)]
remove unused variable

6 years agoMerge pull request #5169 from tamiko/generalized_interpolation_3
Matthias Maier [Fri, 6 Oct 2017 01:14:05 +0000 (20:14 -0500)]
Merge pull request #5169 from tamiko/generalized_interpolation_3

Reimplement VectorTools::interpolate_based_on_material_id

6 years agosimplify code 5169/head
Matthias Maier [Thu, 5 Oct 2017 19:54:37 +0000 (14:54 -0500)]
simplify code

6 years agoMerge pull request #5167 from luca-heltai/kinsol
Wolfgang Bangerth [Thu, 5 Oct 2017 20:34:31 +0000 (14:34 -0600)]
Merge pull request #5167 from luca-heltai/kinsol

KINSOL support.

6 years agoReimplement VectorTools::interpolate_based_on_material_id
Matthias Maier [Wed, 27 Sep 2017 21:00:01 +0000 (16:00 -0500)]
Reimplement VectorTools::interpolate_based_on_material_id

6 years agoMerge pull request #5198 from bangerth/update
Matthias Maier [Thu, 5 Oct 2017 19:35:42 +0000 (14:35 -0500)]
Merge pull request #5198 from bangerth/update

Update to VectorTools::interpolate

6 years agoEntirely avoid memory allocation in two places. 5198/head
Wolfgang Bangerth [Thu, 5 Oct 2017 19:17:11 +0000 (13:17 -0600)]
Entirely avoid memory allocation in two places.

6 years agoUse only one FEValues object.
Wolfgang Bangerth [Wed, 4 Oct 2017 14:41:32 +0000 (08:41 -0600)]
Use only one FEValues object.
>
> Currently, there is one FEValues object that is reinit'd in the innermost
> function, but that function may be called multiple times for the same
> cell for different base elements. That is wasteful, so avoid it.
>
The solution is to reinit it at the outermost place.

6 years agoAvoid passing around ints by reference.
Wolfgang Bangerth [Tue, 3 Oct 2017 21:42:02 +0000 (15:42 -0600)]
Avoid passing around ints by reference.

6 years agoMinor optimization of some memory allocation.
Wolfgang Bangerth [Tue, 3 Oct 2017 21:39:39 +0000 (15:39 -0600)]
Minor optimization of some memory allocation.

6 years agoFixed AS comments. 5167/head
Luca Heltai [Thu, 5 Oct 2017 10:25:44 +0000 (12:25 +0200)]
Fixed AS comments.

6 years agoMerge pull request #5195 from masterleinad/reduce_all_reduce
Daniel Arndt [Wed, 4 Oct 2017 23:02:35 +0000 (01:02 +0200)]
Merge pull request #5195 from masterleinad/reduce_all_reduce

Reduce number of internal::all_reduce versions

6 years agoReduce number of versions of internal::all_reduce 5195/head
Daniel Arndt [Tue, 3 Oct 2017 22:53:21 +0000 (00:53 +0200)]
Reduce number of versions of internal::all_reduce

6 years agoAdd test for operator== and operator!= for ArrayView
Daniel Arndt [Wed, 4 Oct 2017 08:29:09 +0000 (10:29 +0200)]
Add test for operator== and operator!= for ArrayView

6 years agoIntroduce operator== and operator!= for ArrayView
Daniel Arndt [Tue, 3 Oct 2017 22:53:11 +0000 (00:53 +0200)]
Introduce operator== and operator!= for ArrayView

6 years agoMerge pull request #5175 from masterleinad/mg_transfer_block
Martin Kronbichler [Wed, 4 Oct 2017 21:01:27 +0000 (23:01 +0200)]
Merge pull request #5175 from masterleinad/mg_transfer_block

MGTransferBlockMatrixFree with a separate DoFHandler for each block

6 years agoMerge pull request #5193 from bangerth/bb-update
David Wells [Wed, 4 Oct 2017 19:08:10 +0000 (15:08 -0400)]
Merge pull request #5193 from bangerth/bb-update

Doc update for GridTools::compute_bounding_box().

6 years agoMerge pull request #5192 from masterleinad/fix_slepc_test
Daniel Arndt [Wed, 4 Oct 2017 18:03:45 +0000 (20:03 +0200)]
Merge pull request #5192 from masterleinad/fix_slepc_test

Use MUMPS in SLEPcWrappers test

6 years agoRemove extra ';'
Daniel Arndt [Tue, 3 Oct 2017 20:04:05 +0000 (22:04 +0200)]
Remove extra ';'

6 years agoMerge pull request #5176 from bangerth/simplify-code
Timo Heister [Wed, 4 Oct 2017 17:47:09 +0000 (13:47 -0400)]
Merge pull request #5176 from bangerth/simplify-code

Simplify logic in p::d::Triangulation.

6 years agofix sundials interface for NON-MPI installations 5196/head
Alberto Sartori [Wed, 4 Oct 2017 10:04:57 +0000 (12:04 +0200)]
fix sundials interface for NON-MPI installations

6 years agoSimplify code. 5176/head
Wolfgang Bangerth [Sun, 1 Oct 2017 22:58:41 +0000 (16:58 -0600)]
Simplify code.

The previous patch made 'refinement_in_progress' obsolete. Remove it.

6 years agoMerge pull request #5194 from masterleinad/rempve_semicolon
Wolfgang Bangerth [Tue, 3 Oct 2017 21:08:12 +0000 (15:08 -0600)]
Merge pull request #5194 from masterleinad/rempve_semicolon

Remove extra ';'

6 years agoUse MUMPS in PETScWrappers::Jacobi and PETScWrappers::BlockJacobi if available 5192/head
Daniel Arndt [Tue, 3 Oct 2017 16:46:04 +0000 (18:46 +0200)]
Use MUMPS in PETScWrappers::Jacobi and PETScWrappers::BlockJacobi if available

6 years agoMerge pull request #5174 from davydden/la_p_block_scalar_product
Denis Davydov [Tue, 3 Oct 2017 20:07:05 +0000 (22:07 +0200)]
Merge pull request #5174 from davydden/la_p_block_scalar_product

add LA::d::BlockVector:: multivector_inner_product()

6 years agoRemove extra ';' 5194/head
Daniel Arndt [Tue, 3 Oct 2017 20:04:05 +0000 (22:04 +0200)]
Remove extra ';'

6 years agoAdd a test. 5193/head
Wolfgang Bangerth [Tue, 3 Oct 2017 19:27:55 +0000 (13:27 -0600)]
Add a test.

6 years agoDoc update for GridTools::compute_bounding_box().
Wolfgang Bangerth [Tue, 3 Oct 2017 19:27:46 +0000 (13:27 -0600)]
Doc update for GridTools::compute_bounding_box().

6 years agominor doxygen fixes 5174/head
Denis Davydov [Tue, 3 Oct 2017 17:54:16 +0000 (19:54 +0200)]
minor doxygen fixes

6 years agoMerge pull request #5182 from bangerth/update-test
Daniel Arndt [Tue, 3 Oct 2017 14:35:48 +0000 (16:35 +0200)]
Merge pull request #5182 from bangerth/update-test

Update a test.

6 years agoMerge pull request #5151 from tamiko/generalized_interpolation_2
Luca Heltai [Tue, 3 Oct 2017 12:54:33 +0000 (14:54 +0200)]
Merge pull request #5151 from tamiko/generalized_interpolation_2

Improve VectorTools::interpolate: Transformation for systems

6 years agoMerge pull request #5183 from bangerth/doc-update
Luca Heltai [Tue, 3 Oct 2017 12:53:32 +0000 (14:53 +0200)]
Merge pull request #5183 from bangerth/doc-update

A minor doc update to class CellID.

6 years agoMerge pull request #5178 from masterleinad/fix_compile_petsc_complex
Wolfgang Bangerth [Tue, 3 Oct 2017 12:45:20 +0000 (06:45 -0600)]
Merge pull request #5178 from masterleinad/fix_compile_petsc_complex

Fix compilation with complex-valued PETSc

6 years agoMerge pull request #5172 from davydden/parpack_pointers
Luca Heltai [Tue, 3 Oct 2017 12:33:09 +0000 (14:33 +0200)]
Merge pull request #5172 from davydden/parpack_pointers

parpack: add additional solve() which takes eigenvectors as pointers

6 years agostatic_asserts for SUNDIALS solvers 5178/head
Daniel Arndt [Tue, 3 Oct 2017 11:00:42 +0000 (13:00 +0200)]
static_asserts for SUNDIALS solvers

6 years agomake sure multivector_inner_product() updates Property of LAPACKFullMatrix accordingly
Denis Davydov [Mon, 2 Oct 2017 18:00:26 +0000 (20:00 +0200)]
make sure multivector_inner_product() updates Property of LAPACKFullMatrix accordingly

6 years agoadd LA::d::BlockVector::multivector_inner_product()
Denis Davydov [Sat, 30 Sep 2017 21:36:42 +0000 (23:36 +0200)]
add LA::d::BlockVector::multivector_inner_product()

6 years agoadd Utilities::MPI::sum() for LAPACKFullMatrix objects
Denis Davydov [Sat, 30 Sep 2017 21:34:17 +0000 (23:34 +0200)]
add Utilities::MPI::sum() for LAPACKFullMatrix objects

6 years agoMerge pull request #5190 from drwells/add-lapacksupport-docs
Wolfgang Bangerth [Tue, 3 Oct 2017 03:02:52 +0000 (21:02 -0600)]
Merge pull request #5190 from drwells/add-lapacksupport-docs

Enable doxygen for the LAPACKSupport namespace.

6 years agoEnable doxygen for the LAPACKSupport namespace. 5190/head
David Wells [Tue, 3 Oct 2017 02:11:26 +0000 (22:11 -0400)]
Enable doxygen for the LAPACKSupport namespace.

Doxygen does not pick up undocumented namespaces

6 years agoMerge pull request #5186 from bangerth/doc-update-2
David Wells [Tue, 3 Oct 2017 00:46:42 +0000 (20:46 -0400)]
Merge pull request #5186 from bangerth/doc-update-2

Update documentation of SparseMatrixEZ.

6 years agoMerge pull request #5181 from bangerth/fix-exception-2
David Wells [Tue, 3 Oct 2017 00:28:04 +0000 (20:28 -0400)]
Merge pull request #5181 from bangerth/fix-exception-2

Make sure a destructor does not throw any exceptions.

6 years agoMerge pull request #5187 from bangerth/empty-constructor
David Wells [Tue, 3 Oct 2017 00:16:54 +0000 (20:16 -0400)]
Merge pull request #5187 from bangerth/empty-constructor

Use =default for an empty constructor.

6 years agoUse =default for an empty constructor. 5187/head
Wolfgang Bangerth [Mon, 2 Oct 2017 22:21:14 +0000 (16:21 -0600)]
Use =default for an empty constructor.

6 years agoUpdate documentation of SparseMatrixEZ. 5186/head
Wolfgang Bangerth [Mon, 2 Oct 2017 22:16:50 +0000 (16:16 -0600)]
Update documentation of SparseMatrixEZ.

6 years agoMerge pull request #5180 from bangerth/fix-exception
David Wells [Mon, 2 Oct 2017 18:52:51 +0000 (14:52 -0400)]
Merge pull request #5180 from bangerth/fix-exception

Catch exception by reference.

6 years agoA minor doc update to class CellID. 5183/head
Wolfgang Bangerth [Mon, 2 Oct 2017 16:47:49 +0000 (10:47 -0600)]
A minor doc update to class CellID.

6 years agoUpdate a test. 5182/head
Wolfgang Bangerth [Mon, 2 Oct 2017 16:42:51 +0000 (10:42 -0600)]
Update a test.

Let the test produce more output to make debugging easier if something goes wrong.

6 years agoMake sure a destructor does not throw any exceptions. 5181/head
Wolfgang Bangerth [Mon, 2 Oct 2017 16:33:57 +0000 (10:33 -0600)]
Make sure a destructor does not throw any exceptions.

6 years agoCatch exception by reference. 5180/head
Wolfgang Bangerth [Mon, 2 Oct 2017 16:28:21 +0000 (10:28 -0600)]
Catch exception by reference.

Copying is inefficient and, in this case, clearly unnecessary.

6 years agoMerge pull request #5177 from masterleinad/unused_vars
Wolfgang Bangerth [Mon, 2 Oct 2017 14:18:35 +0000 (08:18 -0600)]
Merge pull request #5177 from masterleinad/unused_vars

Silence warnings for unused parameters without LAPACK

6 years agoExtend convert_generalized_support_point_values_to_dof_values for complex-valued...
Daniel Arndt [Mon, 2 Oct 2017 14:12:44 +0000 (16:12 +0200)]
Extend convert_generalized_support_point_values_to_dof_values for complex-valued types

6 years agoDisable some Sundials functions for complex-valued PETSc
Daniel Arndt [Mon, 2 Oct 2017 14:11:59 +0000 (16:11 +0200)]
Disable some Sundials functions for complex-valued PETSc

6 years agoMerge pull request #5109 from davydden/interpolate_mg
Daniel Arndt [Mon, 2 Oct 2017 13:42:14 +0000 (15:42 +0200)]
Merge pull request #5109 from davydden/interpolate_mg

facilitate transfer of fine-level solution to MG levels and test it with MappingQEulerian

6 years agoSilence warnings for unused parameters without LAPACK 5177/head
Daniel Arndt [Mon, 2 Oct 2017 12:28:59 +0000 (14:28 +0200)]
Silence warnings for unused parameters without LAPACK

6 years agoMerge pull request #4729 from gassmoeller/add_particle_class
Luca Heltai [Mon, 2 Oct 2017 09:10:52 +0000 (11:10 +0200)]
Merge pull request #4729 from gassmoeller/add_particle_class

Add particle class

6 years agoChangelog entry 5175/head
Daniel Arndt [Sun, 1 Oct 2017 18:15:07 +0000 (20:15 +0200)]
Changelog entry

6 years agoAdd tests
Daniel Arndt [Sun, 1 Oct 2017 18:14:50 +0000 (20:14 +0200)]
Add tests

6 years agoAllow to use MGTransferBlockMatrixFree with a separate DoFHandler for each block
Daniel Arndt [Sun, 1 Oct 2017 20:53:10 +0000 (22:53 +0200)]
Allow to use MGTransferBlockMatrixFree with a separate DoFHandler for each block

6 years agoSimplify the logic during parallel::distributed mesh refinement.
Wolfgang Bangerth [Sun, 1 Oct 2017 22:03:42 +0000 (16:03 -0600)]
Simplify the logic during parallel::distributed mesh refinement.

Specifically, rather than let a function call itself recursively and catch that,
make sure we call the function of the base class right away.

6 years agoAllow to use PreconditionMG with a separate DoFHandler for each block
Daniel Arndt [Sun, 1 Oct 2017 20:53:01 +0000 (22:53 +0200)]
Allow to use PreconditionMG with a separate DoFHandler for each block

6 years agoFix MatrixFreeOperators::Base::initialize_dof_vector
Daniel Arndt [Sun, 1 Oct 2017 20:51:26 +0000 (22:51 +0200)]
Fix MatrixFreeOperators::Base::initialize_dof_vector

6 years agoparpack: add additional solve() which takes eigenvectors as pointers 5172/head
Denis Davydov [Fri, 29 Sep 2017 16:01:14 +0000 (18:01 +0200)]
parpack: add additional solve() which takes eigenvectors as pointers

6 years agoWB and DD comments.
Luca Heltai [Fri, 29 Sep 2017 13:28:11 +0000 (15:28 +0200)]
WB and DD comments.

6 years agoMerge pull request #5170 from bangerth/fix-warning
Daniel Arndt [Thu, 28 Sep 2017 20:25:54 +0000 (22:25 +0200)]
Merge pull request #5170 from bangerth/fix-warning

Fix a warning about a missing return statement.

6 years agoFix a warning about a missing return statement. 5170/head
Wolfgang Bangerth [Thu, 28 Sep 2017 17:00:35 +0000 (11:00 -0600)]
Fix a warning about a missing return statement.

6 years agoMerge pull request #5154 from davydden/lapack_cholesky
Denis Davydov [Thu, 28 Sep 2017 16:13:26 +0000 (18:13 +0200)]
Merge pull request #5154 from davydden/lapack_cholesky

extend LAPACKFullMatrix to do Cholesky, inverse of SPD, norms and con…

6 years agoMerge pull request #5164 from bangerth/cleanups
Daniel Arndt [Thu, 28 Sep 2017 16:12:46 +0000 (18:12 +0200)]
Merge pull request #5164 from bangerth/cleanups

Two small cleanups in the code that computes hanging node constraints.

6 years agoMerge pull request #5168 from bangerth/doc-update
Daniel Arndt [Thu, 28 Sep 2017 15:35:08 +0000 (17:35 +0200)]
Merge pull request #5168 from bangerth/doc-update

Properly qualify a function name.

6 years agoMerge pull request #5106 from luca-heltai/extract-used-vertices
Wolfgang Bangerth [Thu, 28 Sep 2017 15:30:29 +0000 (09:30 -0600)]
Merge pull request #5106 from luca-heltai/extract-used-vertices

GridTools::extract_used_vertices

6 years agoProperly qualify a function name. 5168/head
Wolfgang Bangerth [Thu, 28 Sep 2017 15:29:06 +0000 (09:29 -0600)]
Properly qualify a function name.

6 years agoMerge pull request #5107 from eldarkh/fix-hp-rt-issues
Wolfgang Bangerth [Thu, 28 Sep 2017 15:28:03 +0000 (09:28 -0600)]
Merge pull request #5107 from eldarkh/fix-hp-rt-issues

More support for vector-valued hp FE spaces

6 years agoKINSOL support.
Luca Heltai [Thu, 28 Sep 2017 14:48:04 +0000 (16:48 +0200)]
KINSOL support.

6 years agoMerge pull request #5166 from luca-heltai/switch-order-sundials
Wolfgang Bangerth [Thu, 28 Sep 2017 13:29:36 +0000 (07:29 -0600)]
Merge pull request #5166 from luca-heltai/switch-order-sundials

Switch order of arguments in constructors for SUNDIALS::*

6 years agoAddress comments, add test for ParticleIterator and ParticleAccessor 4729/head
Rene Gassmoeller [Mon, 25 Sep 2017 17:35:32 +0000 (11:35 -0600)]
Address comments, add test for ParticleIterator and ParticleAccessor

6 years agoMerge pull request #5074 from jwitte08/vectorized_tensor_product_matrix_sum
Martin Kronbichler [Thu, 28 Sep 2017 08:10:48 +0000 (10:10 +0200)]
Merge pull request #5074 from jwitte08/vectorized_tensor_product_matrix_sum

Vectorized tensor product matrix

6 years agoAdded a changelog entry. 5074/head
Julius Witte [Wed, 27 Sep 2017 11:32:17 +0000 (13:32 +0200)]
Added a changelog entry.

6 years agoSwitched order of arguments in SUNDIALS::* constructors. 5166/head
Luca Heltai [Thu, 28 Sep 2017 07:59:56 +0000 (09:59 +0200)]
Switched order of arguments in SUNDIALS::* constructors.

6 years agoMerge pull request #5165 from bangerth/simplify
David Wells [Wed, 27 Sep 2017 21:46:08 +0000 (17:46 -0400)]
Merge pull request #5165 from bangerth/simplify

Simplify some con/destructors by using =default.

6 years agorun astyle. yes, it looks quite bad :-( 5151/head
Matthias Maier [Wed, 27 Sep 2017 17:14:15 +0000 (12:14 -0500)]
run astyle. yes, it looks quite bad :-(

6 years agorefactor code
Matthias Maier [Wed, 27 Sep 2017 17:12:59 +0000 (12:12 -0500)]
refactor code

6 years agoSimplify some con/destructors by using =default. 5165/head
Wolfgang Bangerth [Wed, 27 Sep 2017 19:40:05 +0000 (13:40 -0600)]
Simplify some con/destructors by using =default.

6 years agoMerge pull request #5149 from bangerth/more-hp-work
David Wells [Wed, 27 Sep 2017 17:35:53 +0000 (13:35 -0400)]
Merge pull request #5149 from bangerth/more-hp-work

More steps towards hp in parallel.

6 years agomove thread mutex 5154/head
Denis Davydov [Wed, 27 Sep 2017 14:47:01 +0000 (16:47 +0200)]
move thread mutex

6 years agoBugfix: Also handle nested fe systems
Matthias Maier [Tue, 26 Sep 2017 17:20:12 +0000 (12:20 -0500)]
Bugfix: Also handle nested fe systems

6 years agoadd a test
Matthias Maier [Tue, 26 Sep 2017 16:40:25 +0000 (11:40 -0500)]
add a test

6 years agoreorganize generalized_interpolation tests, add a variant
Matthias Maier [Mon, 25 Sep 2017 22:43:38 +0000 (17:43 -0500)]
reorganize generalized_interpolation tests, add a variant

6 years agoPrefer std::make_shared() over operator new(). 5164/head
Wolfgang Bangerth [Wed, 27 Sep 2017 16:57:05 +0000 (10:57 -0600)]
Prefer std::make_shared() over operator new().

6 years agoreenable last part of numerics/generalized_interpolation_02
Matthias Maier [Mon, 25 Sep 2017 22:35:45 +0000 (17:35 -0500)]
reenable last part of numerics/generalized_interpolation_02

6 years agoVectorTools::interpolate - support transformations with FESystems
Matthias Maier [Sun, 17 Sep 2017 21:50:26 +0000 (16:50 -0500)]
VectorTools::interpolate - support transformations with FESystems

6 years agominor documentation cleanup
Denis Davydov [Wed, 27 Sep 2017 08:34:53 +0000 (10:34 +0200)]
minor documentation cleanup

6 years agoSimplify some pieces of code.
Wolfgang Bangerth [Wed, 27 Sep 2017 14:47:57 +0000 (08:47 -0600)]
Simplify some pieces of code.

6 years agoReorder statements to avoid some computations when not necessary.
Wolfgang Bangerth [Tue, 26 Sep 2017 21:23:25 +0000 (15:23 -0600)]
Reorder statements to avoid some computations when not necessary.


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