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bangerth [Wed, 15 Dec 2010 15:31:39 +0000 (15:31 +0000)]

Add to the documentation.

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bangerth [Wed, 15 Dec 2010 15:23:18 +0000 (15:23 +0000)]

Make code a bit simpler to read.

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bangerth [Wed, 15 Dec 2010 14:57:09 +0000 (14:57 +0000)]

New test that currently fails.

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bangerth [Wed, 15 Dec 2010 14:49:54 +0000 (14:49 +0000)]

Remove an unused variable.

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bangerth [Wed, 15 Dec 2010 14:14:07 +0000 (14:14 +0000)]

Fix typos.

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bangerth [Tue, 14 Dec 2010 06:11:30 +0000 (06:11 +0000)]

Multiply WALLTIME with the number of processors. Let's see if that gets the
number of spurious failures back down.

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pauletti [Sat, 11 Dec 2010 22:36:51 +0000 (22:36 +0000)]

Minor edit in direction_flags

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bangerth [Fri, 10 Dec 2010 16:46:14 +0000 (16:46 +0000)]

Increase the timeout since we are on multicore systems.

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bangerth [Fri, 10 Dec 2010 13:55:55 +0000 (13:55 +0000)]

Add Seba.

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bangerth [Fri, 10 Dec 2010 13:17:55 +0000 (13:17 +0000)]

Install a thread that terminates the program after a time determined
by the WALLTIME environment variable. This kills the program in the
case of deadlocks, rather than letting it hang forever. This is
necessary since the time limit we specify with 'ulimit' only affects
CPU time, not actual wall time.

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bangerth [Fri, 10 Dec 2010 13:16:44 +0000 (13:16 +0000)]

Also set the time limit as an environment variable that programs can query.

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bangerth [Fri, 10 Dec 2010 04:25:16 +0000 (04:25 +0000)]

Rename image file.

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bangerth [Fri, 10 Dec 2010 04:04:50 +0000 (04:04 +0000)]

Add Luca's text.

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bangerth [Fri, 10 Dec 2010 03:02:54 +0000 (03:02 +0000)]

Link to step-38.

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bangerth [Fri, 10 Dec 2010 03:00:24 +0000 (03:00 +0000)]

Fix typo.

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bangerth [Fri, 10 Dec 2010 02:59:25 +0000 (02:59 +0000)]

Link to step-38.

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pauletti [Thu, 9 Dec 2010 17:06:19 +0000 (17:06 +0000)]

FEValues with mapping Q1, now uses direction_flag to return the
oriented normal for meshes of dim<spacedim

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bangerth [Thu, 9 Dec 2010 15:22:17 +0000 (15:22 +0000)]

One more test.

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bangerth [Thu, 9 Dec 2010 14:02:18 +0000 (14:02 +0000)]

New test.

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heister [Thu, 9 Dec 2010 11:22:21 +0000 (11:22 +0000)]

fix typo and remove unused variable.

git-svn-id: https://svn.dealii.org/trunk@22948 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 9 Dec 2010 02:05:54 +0000 (02:05 +0000)]

New test.

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bangerth [Thu, 9 Dec 2010 01:40:25 +0000 (01:40 +0000)]

Document direction flags better.

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bangerth [Thu, 9 Dec 2010 01:37:18 +0000 (01:37 +0000)]

Fix bad markup.

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pauletti [Wed, 8 Dec 2010 20:30:57 +0000 (20:30 +0000)]

Implementation of direction_flags for dim=spacedim-1 meshes

git-svn-id: https://svn.dealii.org/trunk@22944 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 8 Dec 2010 04:45:40 +0000 (04:45 +0000)]

Upon closer thought, there is actually no point in serializing the contents of the Subscriptor base class since we don't want to later overwrite whoever has subscribed to an object when reading it back in.

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bangerth [Wed, 8 Dec 2010 02:59:21 +0000 (02:59 +0000)]

Rather than re-implementing things use them from the common header file.

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bangerth [Wed, 8 Dec 2010 02:56:55 +0000 (02:56 +0000)]

Properly implement operator== for ParameterHandler.

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bangerth [Wed, 8 Dec 2010 02:55:59 +0000 (02:55 +0000)]

OK, this was one of the weirder bugs I've found recently: when we do
#include <vector>
we expect that either (i) make_dependencies ignores this dependence
because it can't find the file <vector> anywhere, e.g. because it
doesn't know the path to system header files, or (ii) enter the proper
dependency to the file if it does know where to find the file.

But what happened in the tests/serialization directory is that it
found a *subdirectory* named 'vector' and added it to the list of
dependencies. And 'make' then tries to re-build this directory by
compiling (using an implicit rule built into 'make') the executable
'vector' from 'vector.cc', which fails because the implicit rule of
course doesn't know anything about where deal.II include files reside,
etc. Completely strange.

So the solution is to ignore directories, if we happen to find
them. In the process, I also replaced the use of std::istream to
test-open a file (which weirdly succeeds for directories, although you
can't read from it) by uses of stat(), which should be faster as well.

git-svn-id: https://svn.dealii.org/trunk@22940 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 7 Dec 2010 21:18:13 +0000 (21:18 +0000)]

Avoid a warning.

git-svn-id: https://svn.dealii.org/trunk@22939 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 7 Dec 2010 19:16:55 +0000 (19:16 +0000)]

Fix another failure caused by assuming that the left neighbor of the right neighbor is the current cell.

git-svn-id: https://svn.dealii.org/trunk@22938 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 7 Dec 2010 13:46:23 +0000 (13:46 +0000)]

When codim=1, we can't take for granted that the left neighbor of the right neighbor is the current cell.

git-svn-id: https://svn.dealii.org/trunk@22937 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 7 Dec 2010 04:04:52 +0000 (04:04 +0000)]

Mention serialization.

git-svn-id: https://svn.dealii.org/trunk@22936 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 7 Dec 2010 04:02:33 +0000 (04:02 +0000)]

List codim-1 changes.

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bangerth [Tue, 7 Dec 2010 04:00:51 +0000 (04:00 +0000)]

Move entries to their correct section. Remove entry on step-38 for now since
it isn't quite finished yet.

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bangerth [Tue, 7 Dec 2010 03:50:32 +0000 (03:50 +0000)]

Add necessary output directories.

git-svn-id: https://svn.dealii.org/trunk@22933 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 7 Dec 2010 03:39:58 +0000 (03:39 +0000)]

Be less conservative when comparing sparsity patterns.

git-svn-id: https://svn.dealii.org/trunk@22932 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 7 Dec 2010 03:38:23 +0000 (03:38 +0000)]

No need any more to provide operator== in the test file since it is now available in the class itself.

git-svn-id: https://svn.dealii.org/trunk@22931 0785d39b-7218-0410-832d-ea1e28bc413d

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rao [Tue, 7 Dec 2010 02:28:08 +0000 (02:28 +0000)]

Modify test for vector.

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rao [Mon, 6 Dec 2010 19:56:53 +0000 (19:56 +0000)]

Add new tests for serialization.

git-svn-id: https://svn.dealii.org/trunk@22929 0785d39b-7218-0410-832d-ea1e28bc413d

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rao [Mon, 6 Dec 2010 18:44:56 +0000 (18:44 +0000)]

Add functions for serialization.

git-svn-id: https://svn.dealii.org/trunk@22928 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 6 Dec 2010 13:55:13 +0000 (13:55 +0000)]

Fix copy of matrix values.

git-svn-id: https://svn.dealii.org/trunk@22927 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 6 Dec 2010 02:23:18 +0000 (02:23 +0000)]

Remove a class that is now no longer needed.

git-svn-id: https://svn.dealii.org/trunk@22926 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 6 Dec 2010 02:08:23 +0000 (02:08 +0000)]

Avoid output to the screen.

git-svn-id: https://svn.dealii.org/trunk@22925 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 6 Dec 2010 00:37:52 +0000 (00:37 +0000)]

Set properly.

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bangerth [Mon, 6 Dec 2010 00:34:51 +0000 (00:34 +0000)]

Set svn:ignore.

git-svn-id: https://svn.dealii.org/trunk@22923 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 6 Dec 2010 00:34:04 +0000 (00:34 +0000)]

New test.

git-svn-id: https://svn.dealii.org/trunk@22922 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 6 Dec 2010 00:26:45 +0000 (00:26 +0000)]

Neighborship information is unreliable in the codim-1 case for 1d
meshes. Avoid using it.

git-svn-id: https://svn.dealii.org/trunk@22921 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 5 Dec 2010 22:50:08 +0000 (22:50 +0000)]

Make DoFRenumbering::component_wise work also for the codim=1 case.

git-svn-id: https://svn.dealii.org/trunk@22920 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sun, 5 Dec 2010 18:06:54 +0000 (18:06 +0000)]

update documentation

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kanschat [Sun, 5 Dec 2010 18:03:29 +0000 (18:03 +0000)]

add initializer for Quadrature

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heltai [Sun, 5 Dec 2010 15:12:56 +0000 (15:12 +0000)]

Fixed integrate difference, and updated step-38 to reflect the new functionality.

git-svn-id: https://svn.dealii.org/trunk@22917 0785d39b-7218-0410-832d-ea1e28bc413d

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heltai [Sun, 5 Dec 2010 15:03:14 +0000 (15:03 +0000)]

Added test for gradient differences on codim one surfaces.

git-svn-id: https://svn.dealii.org/trunk@22916 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 3 Dec 2010 22:53:42 +0000 (22:53 +0000)]

New test for PETSc vectors.

git-svn-id: https://svn.dealii.org/trunk@22915 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 3 Dec 2010 22:43:02 +0000 (22:43 +0000)]

Added a new constructor for PETScWrappers::Vector that takes an existing PETSc Vec that was created by the user and is only wrapped for usage.

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bangerth [Fri, 3 Dec 2010 19:18:50 +0000 (19:18 +0000)]

Also revert r22891 for the same reason. The changes that caused the failure were in configure.in/aclocal.m4 before that patch.

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bangerth [Fri, 3 Dec 2010 16:48:30 +0000 (16:48 +0000)]

Revert 22903 since it make the autotester choke.

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heltai [Fri, 3 Dec 2010 16:36:49 +0000 (16:36 +0000)]

Added tutorial step-38 on Laplace Beltrami Operator.

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heister [Fri, 3 Dec 2010 13:00:45 +0000 (13:00 +0000)]

improve formatting in tutorial overview.

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bangerth [Fri, 3 Dec 2010 05:09:13 +0000 (05:09 +0000)]

Discuss some more.

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bangerth [Fri, 3 Dec 2010 05:02:31 +0000 (05:02 +0000)]

Fix typo.

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bangerth [Thu, 2 Dec 2010 19:22:33 +0000 (19:22 +0000)]

Rather than clumsily computing derived quantities within the finite element spaces, use the DataPostprocessor facilities to do so. This also yields a nice implementation of the viscous heating terms.

git-svn-id: https://svn.dealii.org/trunk@22907 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 2 Dec 2010 16:47:07 +0000 (16:47 +0000)]

Whitespace changes.

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bangerth [Thu, 2 Dec 2010 16:45:55 +0000 (16:45 +0000)]

Make it follow usual style.

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bangerth [Thu, 2 Dec 2010 16:42:00 +0000 (16:42 +0000)]

Use better gravity model as described in the introduction. Allow graphical output also for more processors but more infrequently.

git-svn-id: https://svn.dealii.org/trunk@22904 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 2 Dec 2010 13:42:00 +0000 (13:42 +0000)]

Regenerate.

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heister [Thu, 2 Dec 2010 11:37:40 +0000 (11:37 +0000)]

improve PETSc compiler mismatch error messages.

git-svn-id: https://svn.dealii.org/trunk@22902 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Thu, 2 Dec 2010 11:10:12 +0000 (11:10 +0000)]

Fix get compiler bug in mpi consistency for PETSc 2.3.x

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young [Thu, 2 Dec 2010 11:03:21 +0000 (11:03 +0000)]

Fix bug in mpi consistency for PETSc 2.3.x

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young [Thu, 2 Dec 2010 10:48:05 +0000 (10:48 +0000)]

Fix bug in mpi consistency for PETSc 2.3.x

git-svn-id: https://svn.dealii.org/trunk@22899 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Thu, 2 Dec 2010 08:15:41 +0000 (08:15 +0000)]

Update news on publication

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bangerth [Thu, 2 Dec 2010 05:00:34 +0000 (05:00 +0000)]

A better gravity model.

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bangerth [Thu, 2 Dec 2010 00:34:04 +0000 (00:34 +0000)]

Clarify what I mean by center.

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bangerth [Thu, 2 Dec 2010 00:33:26 +0000 (00:33 +0000)]

Minor formula fix.

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bangerth [Wed, 1 Dec 2010 23:47:10 +0000 (23:47 +0000)]

Remove a lot of debug and timing output stuff.

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bangerth [Wed, 1 Dec 2010 20:21:18 +0000 (20:21 +0000)]

Fix a couple places that cppcheck marked up.

git-svn-id: https://svn.dealii.org/trunk@22893 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 1 Dec 2010 14:34:26 +0000 (14:34 +0000)]

Disable the following warning in xlC: 1540-2909 (W) The subscript 2 is out of range. The only valid subscript is 0.

git-svn-id: https://svn.dealii.org/trunk@22892 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 1 Dec 2010 14:27:37 +0000 (14:27 +0000)]

Using --without-umfpack is equivalent to --with-umfpack=no and made ./configure believe that we should look for an external umfpack version at path 'no'.

git-svn-id: https://svn.dealii.org/trunk@22891 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 30 Nov 2010 16:59:19 +0000 (16:59 +0000)]

Remove various benchmarking features.

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young [Tue, 30 Nov 2010 10:33:04 +0000 (10:33 +0000)]

Fix missing block for doxygen

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bangerth [Tue, 30 Nov 2010 04:52:18 +0000 (04:52 +0000)]

Add a missing instantiation.

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bangerth [Tue, 30 Nov 2010 04:45:36 +0000 (04:45 +0000)]

Initialize member variable to avoid warning by ICC.

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bangerth [Mon, 29 Nov 2010 23:48:38 +0000 (23:48 +0000)]

The intel compiler wants us to initialize each const member.

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bangerth [Mon, 29 Nov 2010 21:56:40 +0000 (21:56 +0000)]

Also instantiate the dummy parallel::distributed::Triangulation class when not using p4est so that icc doesn't complain about missing typeinfo symbols.

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bangerth [Mon, 29 Nov 2010 21:34:27 +0000 (21:34 +0000)]

Really only instantiate functions that aren't explicitly specialized.

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bangerth [Mon, 29 Nov 2010 21:24:09 +0000 (21:24 +0000)]

Do not include functions in explicit instantiations that are explicitly specialized.

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bangerth [Mon, 29 Nov 2010 20:10:43 +0000 (20:10 +0000)]

Fix table of contents; add one more sentence.

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kanschat [Mon, 29 Nov 2010 17:49:46 +0000 (17:49 +0000)]

adjust to moved operators

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kanschat [Mon, 29 Nov 2010 17:17:26 +0000 (17:17 +0000)]

move grad_div to Divergence

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kanschat [Mon, 29 Nov 2010 17:09:02 +0000 (17:09 +0000)]

mov Differential to more appropriate Divergence

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kanschat [Mon, 29 Nov 2010 17:06:44 +0000 (17:06 +0000)]

remove name tag

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buerg [Mon, 29 Nov 2010 17:06:16 +0000 (17:06 +0000)]

Delete shapes.cc

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buerg [Mon, 29 Nov 2010 17:01:11 +0000 (17:01 +0000)]

Splitting of the test fe/shapes due to run-time limitations.

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kanschat [Mon, 29 Nov 2010 16:49:16 +0000 (16:49 +0000)]

add normal fluxes and fix jump

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bangerth [Mon, 29 Nov 2010 15:30:26 +0000 (15:30 +0000)]

Add a note on the difference between using the symmetric gradient or the
straight one.

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young [Mon, 29 Nov 2010 10:52:39 +0000 (10:52 +0000)]

Check for MPI consistency between deal.II and PETSc. Note: This only does the check if MPI is requested at configure time, otherwise, check for PETSc's libmpiuni library

git-svn-id: https://svn.dealii.org/trunk@22873 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Mon, 29 Nov 2010 01:32:09 +0000 (01:32 +0000)]

update documentation

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kanschat [Sun, 28 Nov 2010 23:21:29 +0000 (23:21 +0000)]

cleanup

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kanschat [Sun, 28 Nov 2010 23:20:00 +0000 (23:20 +0000)]

add default constructor for MGDoFHandler

git-svn-id: https://svn.dealii.org/trunk@22870 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sun, 28 Nov 2010 23:19:04 +0000 (23:19 +0000)]

begin operators for LDG

git-svn-id: https://svn.dealii.org/trunk@22869 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sun, 28 Nov 2010 21:02:19 +0000 (21:02 +0000)]

Add some info on the notational conventions for integral operators

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