]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
4 years agoFixed codimension one build.
Luca Heltai [Sat, 2 May 2020 21:31:06 +0000 (23:31 +0200)]
Fixed codimension one build.

4 years agoShort fix to documentation
blaisb [Sat, 2 May 2020 06:07:31 +0000 (02:07 -0400)]
Short fix to documentation

4 years ago- Corrected typos and mistakes
blaisb [Sat, 2 May 2020 05:58:26 +0000 (01:58 -0400)]
- Corrected typos and mistakes
- Finished first pass at documenting step-70
- Changed the default parameter of nitsche penalization to ensure convergence of iterative solver in parallel
- Changed the function driving the motion of the impeller to ensure it comes back at it's original place in then end

4 years agoSome more docs.
Luca Heltai [Fri, 1 May 2020 23:03:03 +0000 (01:03 +0200)]
Some more docs.

4 years agoAllow filenames and cad files.
Luca Heltai [Fri, 1 May 2020 14:58:48 +0000 (16:58 +0200)]
Allow filenames and cad files.

4 years agoTrailing space.
Luca Heltai [Fri, 1 May 2020 13:12:33 +0000 (15:12 +0200)]
Trailing space.

4 years agoMore docs.
Luca Heltai [Fri, 1 May 2020 10:47:20 +0000 (12:47 +0200)]
More docs.

4 years agoFixed typos and small formulas error in the introduction
blaisb [Fri, 1 May 2020 03:05:55 +0000 (23:05 -0400)]
Fixed typos and small formulas error in the introduction

4 years agoRevised and corrected intro.dox
Luca Heltai [Thu, 30 Apr 2020 21:48:33 +0000 (23:48 +0200)]
Revised and corrected intro.dox

4 years agoAdded description of step-70 in top level directory.
Luca Heltai [Thu, 30 Apr 2020 19:33:11 +0000 (21:33 +0200)]
Added description of step-70 in top level directory.

4 years agoAdd implementation of Nitsche for co-dim one
Luca Heltai [Thu, 30 Apr 2020 18:03:55 +0000 (20:03 +0200)]
Add implementation of Nitsche for co-dim one

4 years ago- Fixed a lot of mistakes in equations that prevented rendering
blaisb [Thu, 30 Apr 2020 17:11:06 +0000 (13:11 -0400)]
- Fixed a lot of mistakes in equations that prevented rendering
- Fixed a few spelling mistakes
- Fixed formulation of the weak form for the Nitsche method

4 years agoIndentation fix
blaisb [Thu, 30 Apr 2020 13:05:30 +0000 (09:05 -0400)]
Indentation fix

4 years agoTry to fix doxygen.
Luca Heltai [Thu, 30 Apr 2020 12:09:08 +0000 (14:09 +0200)]
Try to fix doxygen.

4 years agoFinished a first complete draft of the introduction
blaisb [Thu, 30 Apr 2020 04:40:15 +0000 (00:40 -0400)]
Finished a first complete draft of the introduction

4 years agoSome documentation.
Luca Heltai [Tue, 28 Apr 2020 21:36:19 +0000 (23:36 +0200)]
Some documentation.

4 years agoProgress on documentation
blaisb [Mon, 20 Apr 2020 02:19:35 +0000 (22:19 -0400)]
Progress on documentation

4 years agoBegun work on the introduction of the documentation of step-70
blaisb [Sat, 18 Apr 2020 05:39:27 +0000 (01:39 -0400)]
Begun work on the introduction of the documentation of step-70

4 years agoLocal refinement, and output to single vtu + global pvd.
Luca Heltai [Fri, 17 Apr 2020 00:41:45 +0000 (02:41 +0200)]
Local refinement, and output to single vtu + global pvd.

4 years agoCopy doc from step-60.
Luca Heltai [Tue, 14 Apr 2020 23:09:21 +0000 (01:09 +0200)]
Copy doc from step-60.

4 years agoAdded example parameter file.
Luca Heltai [Tue, 14 Apr 2020 23:00:20 +0000 (01:00 +0200)]
Added example parameter file.

4 years agoStep-70
Luca Heltai [Thu, 21 Nov 2019 19:28:22 +0000 (20:28 +0100)]
Step-70

Work in progress for step-70.

Co-authored-by: Bruno Blais <blais.bruno@gmail.com>
4 years agoMerge pull request #10210 from marcfehling/take_over9969
Matthias Maier [Fri, 15 May 2020 03:11:00 +0000 (22:11 -0500)]
Merge pull request #10210 from marcfehling/take_over9969

[9.2] Take over #9969: Revisited binary search for parallel::distributed::GridRefinement.

4 years agoMerge pull request #10217 from tamiko/pr_10198
Timo Heister [Fri, 15 May 2020 01:43:18 +0000 (21:43 -0400)]
Merge pull request #10217 from tamiko/pr_10198

[9.2] Take over #10198

4 years agoMerge pull request #10213 from tamiko/pr_10207
Timo Heister [Fri, 15 May 2020 01:41:50 +0000 (21:41 -0400)]
Merge pull request #10213 from tamiko/pr_10207

[9.2] Take over #10207

4 years agoMake further edits to step-50.cc. 10217/head
Wolfgang Bangerth [Thu, 14 May 2020 16:22:09 +0000 (10:22 -0600)]
Make further edits to step-50.cc.

4 years agoAvoid a statement that appears to confuse doxygen.
Wolfgang Bangerth [Wed, 13 May 2020 22:52:45 +0000 (16:52 -0600)]
Avoid a statement that appears to confuse doxygen.

4 years agoPrint an error message if no input is given.
Wolfgang Bangerth [Wed, 13 May 2020 22:03:22 +0000 (16:03 -0600)]
Print an error message if no input is given.

4 years agoRename variables to their standard names.
Wolfgang Bangerth [Wed, 13 May 2020 21:41:24 +0000 (15:41 -0600)]
Rename variables to their standard names.

4 years agoUse the name make_coefficient_table() in analogy to make_shared() etc.
Wolfgang Bangerth [Wed, 13 May 2020 21:39:48 +0000 (15:39 -0600)]
Use the name make_coefficient_table() in analogy to make_shared() etc.

4 years agoUse switch statements for finite enumerations.
Wolfgang Bangerth [Wed, 13 May 2020 21:39:04 +0000 (15:39 -0600)]
Use switch statements for finite enumerations.

4 years agoMinor code improvements to step-50.
Wolfgang Bangerth [Wed, 13 May 2020 21:36:34 +0000 (15:36 -0600)]
Minor code improvements to step-50.

4 years agoUse better variable names when computing the error estimator.
Wolfgang Bangerth [Wed, 13 May 2020 21:34:30 +0000 (15:34 -0600)]
Use better variable names when computing the error estimator.

4 years agoSimplify creation of a std::set.
Wolfgang Bangerth [Wed, 13 May 2020 21:32:27 +0000 (15:32 -0600)]
Simplify creation of a std::set.

4 years agoBreak a long string to lead to a better line break.
Wolfgang Bangerth [Wed, 13 May 2020 21:30:02 +0000 (15:30 -0600)]
Break a long string to lead to a better line break.

4 years agoRename a variable in step-50.
Wolfgang Bangerth [Wed, 13 May 2020 21:26:53 +0000 (15:26 -0600)]
Rename a variable in step-50.

4 years agoUse a better description of the error estimator vector in the output.
Wolfgang Bangerth [Wed, 13 May 2020 21:24:16 +0000 (15:24 -0600)]
Use a better description of the error estimator vector in the output.

4 years agoMake the logic in step-50's main() function simpler.
Wolfgang Bangerth [Wed, 13 May 2020 21:23:00 +0000 (15:23 -0600)]
Make the logic in step-50's main() function simpler.

4 years agoUpdate the commentary of step-50.
Wolfgang Bangerth [Wed, 13 May 2020 21:22:34 +0000 (15:22 -0600)]
Update the commentary of step-50.

4 years agoUpdates to the results section of step-50.
Wolfgang Bangerth [Wed, 13 May 2020 21:18:12 +0000 (15:18 -0600)]
Updates to the results section of step-50.

4 years agoUpdates to the introduction of step-50.
Wolfgang Bangerth [Wed, 13 May 2020 21:18:02 +0000 (15:18 -0600)]
Updates to the introduction of step-50.

4 years agoMerge pull request #10209 from masterleinad/take_over10013
Matthias Maier [Thu, 14 May 2020 20:54:10 +0000 (15:54 -0500)]
Merge pull request #10209 from masterleinad/take_over10013

[9.2] Take over #10013: Introduced p::d::ErrorPredictor.

4 years agoFix extract_rtree_level for small problem sizes 10213/head
Peter Munch [Thu, 14 May 2020 08:32:50 +0000 (10:32 +0200)]
Fix extract_rtree_level for small problem sizes

4 years agoAdded tests with different compositions of criteria vectors for fixed number refinement. 10210/head
Marc Fehling [Thu, 14 May 2020 18:44:41 +0000 (20:44 +0200)]
Added tests with different compositions of criteria vectors for fixed number refinement.

4 years agoMerge pull request #10212 from masterleinad/takeover10208
Martin Kronbichler [Thu, 14 May 2020 20:18:30 +0000 (22:18 +0200)]
Merge pull request #10212 from masterleinad/takeover10208

[9.2] Take over #10208: Fix python FunctionManifold

4 years agoFix python FunctionManifold 10212/head
Alexander Grayver [Thu, 14 May 2020 09:25:39 +0000 (11:25 +0200)]
Fix python FunctionManifold

4 years agoRevisited adjust_interesting_range for parallel::distributed::GridRefinement.
Marc Fehling [Tue, 28 Apr 2020 13:41:32 +0000 (15:41 +0200)]
Revisited adjust_interesting_range for parallel::distributed::GridRefinement.

4 years agoIntroduced p::d::ErrorPredictor. 10209/head
Marc Fehling [Fri, 22 Nov 2019 17:06:14 +0000 (18:06 +0100)]
Introduced p::d::ErrorPredictor.

Predicts error after adaptation based on future_fe_indices and CellStatus.

4 years agoMerge pull request #10203 from tamiko/pr_10201
Timo Heister [Thu, 14 May 2020 11:56:13 +0000 (07:56 -0400)]
Merge pull request #10203 from tamiko/pr_10201

[9.2.] Take over #10201

4 years agoMerge pull request #10200 from masterleinad/fix_mpi_condense_petsc_complex_9_2
Timo Heister [Thu, 14 May 2020 00:29:47 +0000 (20:29 -0400)]
Merge pull request #10200 from masterleinad/fix_mpi_condense_petsc_complex_9_2

[9.2] Take over #10199:  Choose output files for mpi/condense_01 correctly

4 years agoMerge pull request #10204 from tamiko/pr_10202
Wolfgang Bangerth [Wed, 13 May 2020 23:43:42 +0000 (01:43 +0200)]
Merge pull request #10204 from tamiko/pr_10202

[9.2] Take over #10202 #10202 Update an entry in the changelog. See #10072

4 years agoUpdate an entry in the changelog. 10204/head
Wolfgang Bangerth [Wed, 13 May 2020 23:05:53 +0000 (17:05 -0600)]
Update an entry in the changelog.

4 years agoCMake: relax arpack and parpack library directory requirements 10203/head
Matthias Maier [Wed, 13 May 2020 22:54:10 +0000 (17:54 -0500)]
CMake: relax arpack and parpack library directory requirements

Some Linux distributions install the parallel libparpack.so* component
in an MPI vendor specific directory different from the location of the
serial libarpack.so* library. We can thus not assume that both are
located in the same directory.

Closes: #10197
4 years agoChoose output files for mpi/condense_01 correctly 10200/head
Daniel Arndt [Wed, 13 May 2020 22:09:46 +0000 (18:09 -0400)]
Choose output files for mpi/condense_01 correctly

4 years agoMerge pull request #10196 from tamiko/pr_10195
Wolfgang Bangerth [Wed, 13 May 2020 20:54:35 +0000 (22:54 +0200)]
Merge pull request #10196 from tamiko/pr_10195

[9.2] Take over #10195

4 years agoDoxygen: Fix include strip 10196/head
Matthias Maier [Wed, 13 May 2020 19:19:18 +0000 (14:19 -0500)]
Doxygen: Fix include strip

This fixes a bug introduced in #10187

4 years agoMerge pull request #10192 from tamiko/pr_10189
Timo Heister [Wed, 13 May 2020 18:38:07 +0000 (14:38 -0400)]
Merge pull request #10192 from tamiko/pr_10189

Take over #10189 and #10191

4 years agoMerge pull request #10193 from masterleinad/take_10190
David Wells [Wed, 13 May 2020 17:32:21 +0000 (13:32 -0400)]
Merge pull request #10193 from masterleinad/take_10190

[9.2] Take over #10190: Run Travis on all branches

4 years agoRun Travis on all branches 10193/head
Daniel Arndt [Wed, 13 May 2020 16:41:20 +0000 (12:41 -0400)]
Run Travis on all branches

4 years agoDocumentation: Treat code gallery projects as examples 10192/head
Matthias Maier [Wed, 13 May 2020 16:02:38 +0000 (11:02 -0500)]
Documentation: Treat code gallery projects as examples

Installing the code gallery projects as part of the html documentation
is not ideal. Let us install the code gallery projects as a sub
directory under the EXAMPLES_RELDIR instead:

  examples/code-gallery/*
  examples/step-*

4 years agoDocumentation: fix make_gallery.pl
Matthias Maier [Wed, 13 May 2020 16:46:31 +0000 (11:46 -0500)]
Documentation: fix make_gallery.pl

Otherwise newer doxygen does not parse the generated *.h files...
See #8972

4 years agoMerge pull request #10187 from tamiko/pr_10178
Matthias Maier [Wed, 13 May 2020 16:48:22 +0000 (11:48 -0500)]
Merge pull request #10187 from tamiko/pr_10178

[9.2] Take over #10178

4 years agoMerge pull request #10186 from tamiko/pr_10176
David Wells [Wed, 13 May 2020 16:01:08 +0000 (12:01 -0400)]
Merge pull request #10186 from tamiko/pr_10176

[9.2] Take over #10176

4 years agodoxygen: Strip full @CMAKE_SOURCE_DIR@ and @CMAKE_BINARY_DIR@ 10187/head
Matthias Maier [Wed, 13 May 2020 05:12:48 +0000 (00:12 -0500)]
doxygen: Strip full @CMAKE_SOURCE_DIR@ and @CMAKE_BINARY_DIR@

The current configuration fails to strip the repository path from source
directories, e.g., on the homepage we have for example:

"""
The documentation for this struct was generated from the following files:

    deal.II/lac/petsc_precondition.h
    /home/dealii/dealii/source/lac/petsc_precondition.cc
"""

With this change this now reads:

"""
The documentation for this struct was generated from the following files:

    include/deal.II/lac/petsc_precondition.h
    source/lac/petsc_precondition.cc
"""

4 years agoSilence deprecation warnings 10186/head
Bruno Turcksin [Wed, 13 May 2020 02:11:32 +0000 (02:11 +0000)]
Silence deprecation warnings

4 years agoFix comment
Bruno Turcksin [Wed, 13 May 2020 02:03:05 +0000 (02:03 +0000)]
Fix comment

4 years agoRemove unusable variable
Bruno Turcksin [Wed, 13 May 2020 02:02:26 +0000 (02:02 +0000)]
Remove unusable variable

4 years agoUse sensible default parameter
Bruno Turcksin [Wed, 13 May 2020 02:01:49 +0000 (02:01 +0000)]
Use sensible default parameter

4 years agoFix test after some sadd and equ functions have been removed
Bruno Turcksin [Wed, 13 May 2020 02:00:50 +0000 (02:00 +0000)]
Fix test after some sadd and equ functions have been removed

4 years agoMerge pull request #10185 from tamiko/pr_10179
David Wells [Wed, 13 May 2020 15:35:15 +0000 (11:35 -0400)]
Merge pull request #10185 from tamiko/pr_10179

[9.2] Take over #10179: contrib/utilities/makeofflinedoc.sh: Also install jpg

4 years agocontrib/utilities/makeofflinedoc.sh: Also install jpg 10185/head
Matthias Maier [Wed, 13 May 2020 06:43:02 +0000 (01:43 -0500)]
contrib/utilities/makeofflinedoc.sh: Also install jpg

4 years agoMerge pull request #10184 from masterleinad/fix_braces_47
Timo Heister [Wed, 13 May 2020 14:25:47 +0000 (10:25 -0400)]
Merge pull request #10184 from masterleinad/fix_braces_47

[9.2] Take over #10183: Fix missing closing braces.

4 years agoFix missing closing braces. 10184/head
Wolfgang Bangerth [Wed, 13 May 2020 13:37:08 +0000 (07:37 -0600)]
Fix missing closing braces.

4 years agoMerge pull request #10177 from masterleinad/take_over_10161
Martin Kronbichler [Wed, 13 May 2020 06:00:42 +0000 (08:00 +0200)]
Merge pull request #10177 from masterleinad/take_over_10161

 [9.2] Take over #10161: Removed two variables which were not used in particles/utilities.h

4 years agoupdate VERSION for release v9.2.0-rc1
Matthias Maier [Wed, 13 May 2020 03:41:31 +0000 (22:41 -0500)]
update VERSION for release

4 years agoRemoved two variables which were not used in particles/utilities.h 10177/head
blaisb [Tue, 12 May 2020 20:14:06 +0000 (16:14 -0400)]
Removed two variables which were not used in particles/utilities.h

4 years agoMerge pull request #10159 from tjhei/jenkins_ci_branches
Matthias Maier [Wed, 13 May 2020 03:17:30 +0000 (22:17 -0500)]
Merge pull request #10159 from tjhei/jenkins_ci_branches

[9.2] Take over #10173: Jenkins: also test release branches

4 years agoMerge pull request #10169 from tamiko/pr_10168
Daniel Arndt [Wed, 13 May 2020 03:10:30 +0000 (23:10 -0400)]
Merge pull request #10169 from tamiko/pr_10168

4 years agoMerge pull request #10172 from tamiko/pr_10171
Daniel Arndt [Wed, 13 May 2020 01:12:43 +0000 (21:12 -0400)]
Merge pull request #10172 from tamiko/pr_10171

4 years agoMerge pull request #10170 from tamiko/remove_test
Timo Heister [Wed, 13 May 2020 01:11:04 +0000 (21:11 -0400)]
Merge pull request #10170 from tamiko/remove_test

[9.2] remove test mpi/p4est_bug

4 years agoupdate fe_series tests again to latest changes 10172/head
Matthias Maier [Wed, 13 May 2020 00:58:08 +0000 (19:58 -0500)]
update fe_series tests again to latest changes

4 years agoMerge pull request #10167 from tamiko/pr_10166
Daniel Arndt [Wed, 13 May 2020 00:53:49 +0000 (20:53 -0400)]
Merge pull request #10167 from tamiko/pr_10166

4 years agoremove test mpi/p4est_bug 10170/head
Matthias Maier [Wed, 13 May 2020 00:49:44 +0000 (19:49 -0500)]
remove test mpi/p4est_bug

This test will actually make it past the expect=run stage if p4est is
not compiled with debug asserts. This is unfortunately independent of
whether deal.II is in release or debug mode.

4 years agodo not print mesh in opencascade/stl_* tests 10169/head
Matthias Maier [Wed, 13 May 2020 00:27:35 +0000 (19:27 -0500)]
do not print mesh in opencascade/stl_* tests

These tests create a mesh (with our opencascade) interface.
Unfortunately, the result pretty much depends on the mesher being used
(which changes between opencascade and oce versions), the standard
library version (libstdc++ versus libc++) and the CPU architecture.

I initially thought that the test result would not depend on the machine
this test is running on and created the output alternatives
(*.output.opencascade7.4.0) on my laptop. Evidently this did not fix
this test on our main tester. Let's simply remove the output and just
check that the code path runs without throwing an error.

4 years agoexamples/step-69: fix texttt formulas 10167/head
Matthias Maier [Tue, 12 May 2020 22:01:37 +0000 (17:01 -0500)]
examples/step-69: fix texttt formulas

4 years agoJenknis: also test release branches dealii-testing 10159/head
Timo Heister [Tue, 12 May 2020 19:14:42 +0000 (15:14 -0400)]
Jenknis: also test release branches

4 years agoupdate AUTHORS
Matthias Maier [Tue, 12 May 2020 18:03:47 +0000 (13:03 -0500)]
update AUTHORS

4 years agoupdate VERSION
Matthias Maier [Tue, 12 May 2020 18:02:58 +0000 (13:02 -0500)]
update VERSION

4 years agoMerge pull request #10157 from tamiko/update_version
David Wells [Tue, 12 May 2020 17:56:46 +0000 (13:56 -0400)]
Merge pull request #10157 from tamiko/update_version

Release step 5: update VERSION

4 years agoMerge pull request #10156 from tamiko/update-tag-file
David Wells [Tue, 12 May 2020 17:56:36 +0000 (13:56 -0400)]
Merge pull request #10156 from tamiko/update-tag-file

Release step 1a: Update tag list

4 years agoMerge pull request #10154 from tamiko/update-changes-file
Matthias Maier [Tue, 12 May 2020 17:55:16 +0000 (12:55 -0500)]
Merge pull request #10154 from tamiko/update-changes-file

Release step 1: Update changelog file

4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h 10154/head
Matthias Maier [Tue, 12 May 2020 17:28:31 +0000 (12:28 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:28:25 +0000 (12:28 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:28:16 +0000 (12:28 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:28:08 +0000 (12:28 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:28:02 +0000 (12:28 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:27:55 +0000 (12:27 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:27:44 +0000 (12:27 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:27:20 +0000 (12:27 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:27:06 +0000 (12:27 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>

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