]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
20 months agoCMake: fix kokkos header installation 14640/head
Matthias Maier [Wed, 4 Jan 2023 18:41:19 +0000 (12:41 -0600)]
CMake: fix kokkos header installation

20 months agoMerge pull request #14634 from tamiko/fix_configuration
Timo Heister [Tue, 3 Jan 2023 21:04:38 +0000 (16:04 -0500)]
Merge pull request #14634 from tamiko/fix_configuration

CMake: Do not set errand DEAL_II_TRILINOS_WITH* if Trilinos gets disabled

20 months agoCMake: propagate Trilinos configuration into DEAL_II_ namespace 14634/head
Matthias Maier [Tue, 3 Jan 2023 17:22:09 +0000 (11:22 -0600)]
CMake: propagate Trilinos configuration into DEAL_II_ namespace

20 months agoCMake: do not pollute DEAL_II_* namespace while searching for Trilinos
Matthias Maier [Tue, 3 Jan 2023 17:11:04 +0000 (11:11 -0600)]
CMake: do not pollute DEAL_II_* namespace while searching for Trilinos

20 months agoMerge pull request #14629 from jppelteret/trilinos_nox_01
Daniel Arndt [Tue, 3 Jan 2023 12:24:58 +0000 (13:24 +0100)]
Merge pull request #14629 from jppelteret/trilinos_nox_01

20 months agoAddress minor issues in NOX wrapper 14629/head
Jean-Paul Pelteret [Sun, 1 Jan 2023 18:38:59 +0000 (19:38 +0100)]
Address minor issues in NOX wrapper

20 months agoMerge pull request #14631 from masterleinad/fix_trilinos_kokkos
Matthias Maier [Tue, 3 Jan 2023 06:44:31 +0000 (00:44 -0600)]
Merge pull request #14631 from masterleinad/fix_trilinos_kokkos

Fix up Trilinos+Kokos detection

20 months agoFix up Trilinos+Kokos detection 14631/head
Daniel Arndt [Mon, 2 Jan 2023 18:44:26 +0000 (19:44 +0100)]
Fix up Trilinos+Kokos detection

20 months agoMerge pull request #14332 from peterrum/nox
Daniel Arndt [Mon, 2 Jan 2023 18:27:27 +0000 (19:27 +0100)]
Merge pull request #14332 from peterrum/nox

20 months agoMerge pull request #14626 from masterleinad/require_trilinos_kokkos_13_2
Matthias Maier [Mon, 2 Jan 2023 15:01:04 +0000 (09:01 -0600)]
Merge pull request #14626 from masterleinad/require_trilinos_kokkos_13_2

Require Trilinos 13.2 if it includes Kokkos

20 months agoMerge pull request #14627 from bangerth/vtu-99
David Wells [Mon, 2 Jan 2023 14:09:43 +0000 (09:09 -0500)]
Merge pull request #14627 from bangerth/vtu-99

Get rid of VtuStream class

20 months agoApply suggestions 14332/head
Peter Munch [Thu, 29 Dec 2022 19:48:45 +0000 (20:48 +0100)]
Apply suggestions

20 months agoMerge pull request #14630 from tamiko/silence_kokkos_warning
Daniel Arndt [Mon, 2 Jan 2023 12:58:37 +0000 (13:58 +0100)]
Merge pull request #14630 from tamiko/silence_kokkos_warning

20 months agoFix warnings 14626/head
Daniel Arndt [Mon, 2 Jan 2023 11:04:32 +0000 (12:04 +0100)]
Fix warnings

20 months agoRun parallel simplex CI on Ubuntu 22.04 for newer Trilinos
Daniel Arndt [Mon, 2 Jan 2023 09:59:15 +0000 (10:59 +0100)]
Run parallel simplex CI on Ubuntu 22.04 for newer Trilinos

20 months agoMerge pull request #14623 from jppelteret/compiler_fix_01
Matthias Maier [Mon, 2 Jan 2023 04:33:21 +0000 (22:33 -0600)]
Merge pull request #14623 from jppelteret/compiler_fix_01

Fix compiler error for older version of GCC

20 months agoCMake: Silence a Kokkos warning about unset OMP_PROC_BIND 14630/head
Matthias Maier [Sun, 1 Jan 2023 19:41:23 +0000 (13:41 -0600)]
CMake: Silence a Kokkos warning about unset OMP_PROC_BIND

We now set the OMP_PROC_BIND variable to false to allow free movement of
the two worker threads and silence a KOKKOS warning (which might insist
on this variable to be defined).

20 months agoMerge pull request #14568 from tjhei/jenkins-mpi-all
Daniel Arndt [Sun, 1 Jan 2023 16:59:06 +0000 (17:59 +0100)]
Merge pull request #14568 from tjhei/jenkins-mpi-all

20 months ago[CI]: test all MPI tests 14568/head
Timo Heister [Sun, 11 Dec 2022 20:09:24 +0000 (15:09 -0500)]
[CI]: test all MPI tests

20 months agoAdd a changelog entry. 14627/head
Wolfgang Bangerth [Sat, 31 Dec 2022 05:06:26 +0000 (22:06 -0700)]
Add a changelog entry.

20 months agoFix a doc reference to a function argument.
Wolfgang Bangerth [Sat, 31 Dec 2022 05:03:00 +0000 (22:03 -0700)]
Fix a doc reference to a function argument.

20 months agoUpdate a comment.
Wolfgang Bangerth [Fri, 30 Dec 2022 23:17:28 +0000 (16:17 -0700)]
Update a comment.

20 months agoMake if and else branches similar, and move code out of the if-else.
Wolfgang Bangerth [Fri, 30 Dec 2022 23:15:06 +0000 (16:15 -0700)]
Make if and else branches similar, and move code out of the if-else.

20 months agoRename variables.
Wolfgang Bangerth [Fri, 30 Dec 2022 22:30:26 +0000 (15:30 -0700)]
Rename variables.

20 months agoMove the update of a variable out of if-else branches.
Wolfgang Bangerth [Fri, 30 Dec 2022 22:25:30 +0000 (15:25 -0700)]
Move the update of a variable out of if-else branches.

20 months agoMove an if-condition into the body of a loop, rather than repeating the loop.
Wolfgang Bangerth [Fri, 30 Dec 2022 22:15:29 +0000 (15:15 -0700)]
Move an if-condition into the body of a loop, rather than repeating the loop.

20 months agoPush a variable into inner scopes.
Wolfgang Bangerth [Fri, 30 Dec 2022 22:08:17 +0000 (15:08 -0700)]
Push a variable into inner scopes.

20 months agoGet rid of the VtuStream class.
Wolfgang Bangerth [Fri, 30 Dec 2022 22:00:49 +0000 (15:00 -0700)]
Get rid of the VtuStream class.

20 months agoAlso inline the write_high_order_cell() function into write_vtu_main().
Wolfgang Bangerth [Fri, 30 Dec 2022 21:56:58 +0000 (14:56 -0700)]
Also inline the write_high_order_cell() function into write_vtu_main().

This allows getting rid of the vtu_stream object and associated ostringstream object.

20 months agoInline the write_high_order_cells() function into write_vtu_main().
Wolfgang Bangerth [Fri, 30 Dec 2022 19:59:09 +0000 (12:59 -0700)]
Inline the write_high_order_cells() function into write_vtu_main().

20 months agoMerge pull request #14622 from bangerth/vtu-77
David Wells [Sat, 31 Dec 2022 14:11:57 +0000 (09:11 -0500)]
Merge pull request #14622 from bangerth/vtu-77

Remove some duplication; also simplify VTK code.

20 months agoMerge pull request #14625 from bangerth/assertion
David Wells [Fri, 30 Dec 2022 20:34:32 +0000 (15:34 -0500)]
Merge pull request #14625 from bangerth/assertion

Improve documentation.

20 months agoMerge pull request #14621 from masterleinad/remove_compiler_cuda_aware
Daniel Arndt [Fri, 30 Dec 2022 19:11:09 +0000 (20:11 +0100)]
Merge pull request #14621 from masterleinad/remove_compiler_cuda_aware

20 months agoRemove DEAL_II_COMPILER_CUDA_AWARE 14621/head
Daniel Arndt [Thu, 29 Dec 2022 13:52:35 +0000 (14:52 +0100)]
Remove DEAL_II_COMPILER_CUDA_AWARE

20 months agoMerge pull request #14537 from masterleinad/kokkos_la_d_vector_kokkos
Bruno Turcksin [Fri, 30 Dec 2022 13:58:06 +0000 (08:58 -0500)]
Merge pull request #14537 from masterleinad/kokkos_la_d_vector_kokkos

20 months agoRemove a static assert in symmetric tensor 14623/head
Jean-Paul Pelteret [Fri, 30 Dec 2022 13:44:29 +0000 (14:44 +0100)]
Remove a static assert in symmetric tensor

20 months agoMerge pull request #14624 from bangerth/ref
David Wells [Fri, 30 Dec 2022 13:15:48 +0000 (08:15 -0500)]
Merge pull request #14624 from bangerth/ref

Move a function to ReferenceCell

20 months agoRequire Trilinos 13.2 if it includes Kokkos
Daniel Arndt [Fri, 30 Dec 2022 09:48:46 +0000 (10:48 +0100)]
Require Trilinos 13.2 if it includes Kokkos

20 months agoAdd NOX wrapper
Peter Munch [Sun, 2 Oct 2022 18:30:32 +0000 (20:30 +0200)]
Add NOX wrapper

20 months agoMerge pull request #14620 from tjhei/jenkins-random
David Wells [Fri, 30 Dec 2022 03:28:32 +0000 (22:28 -0500)]
Merge pull request #14620 from tjhei/jenkins-random

Jenkins: run tests in random order

20 months agoMove a function into ReferenceCell. 14624/head
Wolfgang Bangerth [Thu, 29 Dec 2022 22:17:51 +0000 (15:17 -0700)]
Move a function into ReferenceCell.

20 months agoAdjust return types and function argument names.
Wolfgang Bangerth [Thu, 29 Dec 2022 22:05:02 +0000 (15:05 -0700)]
Adjust return types and function argument names.

20 months agoImprove documentation. 14625/head
Wolfgang Bangerth [Thu, 29 Dec 2022 21:09:04 +0000 (14:09 -0700)]
Improve documentation.

20 months agoFix compiler error for older version of GCC
Jean-Paul Pelteret [Thu, 29 Dec 2022 22:05:33 +0000 (23:05 +0100)]
Fix compiler error for older version of GCC

20 months agoMerge pull request #14596 from tamiko/fix_step_81_doc
Matthias Maier [Thu, 29 Dec 2022 19:15:10 +0000 (13:15 -0600)]
Merge pull request #14596 from tamiko/fix_step_81_doc

step-81: Fix a typo in external links

20 months agoMerge remote-tracking branch 'upstream/master' into kokkos_la_d_vector_kokkos 14537/head
Daniel Arndt [Thu, 29 Dec 2022 19:13:16 +0000 (20:13 +0100)]
Merge remote-tracking branch 'upstream/master' into kokkos_la_d_vector_kokkos

20 months agoUpdate examples/step-81/doc/results.dox 14596/head
Matthias Maier [Thu, 29 Dec 2022 18:22:57 +0000 (12:22 -0600)]
Update examples/step-81/doc/results.dox

Co-authored-by: Marc Fehling <mafehling.git@gmail.com>
20 months agoRemove some duplication; also simplify VTK code. 14622/head
Wolfgang Bangerth [Thu, 29 Dec 2022 18:11:48 +0000 (11:11 -0700)]
Remove some duplication; also simplify VTK code.

The VTK tags are already defined in helper functions in class ReferenceCell; get them from
there. While there, the previous version of a helper function was rather hard to read
because of a long list of if-else cases; make it a bit easier to read.

20 months agoUse subview
Daniel Arndt [Thu, 29 Dec 2022 16:21:20 +0000 (17:21 +0100)]
Use subview

20 months agoAdd label for parallel_reduce
Daniel Arndt [Thu, 29 Dec 2022 16:21:12 +0000 (17:21 +0100)]
Add label for parallel_reduce

20 months agoUse subview
Daniel Arndt [Thu, 29 Dec 2022 16:09:00 +0000 (17:09 +0100)]
Use subview

20 months agoJenkins: run tests in random order 14620/head
Timo Heister [Thu, 29 Dec 2022 15:25:55 +0000 (10:25 -0500)]
Jenkins: run tests in random order

Schedule tests in random order to improve load balance over time and therefor improve speed.

20 months agoRevert changes to boost
Daniel Arndt [Thu, 29 Dec 2022 09:27:21 +0000 (10:27 +0100)]
Revert changes to boost

20 months agoMake doxygen happy
Daniel Arndt [Thu, 29 Dec 2022 09:02:26 +0000 (10:02 +0100)]
Make doxygen happy

20 months agoKokkos::Experimental::abs -> Kokkos::Experimental::fabs
Daniel Arndt [Thu, 29 Dec 2022 09:01:07 +0000 (10:01 +0100)]
Kokkos::Experimental::abs -> Kokkos::Experimental::fabs

20 months agoMerge pull request #14611 from jppelteret/fe_interface_values_02
Daniel Arndt [Wed, 28 Dec 2022 22:09:25 +0000 (23:09 +0100)]
Merge pull request #14611 from jppelteret/fe_interface_values_02

20 months agoFix
Daniel Arndt [Wed, 28 Dec 2022 21:44:15 +0000 (22:44 +0100)]
Fix

20 months agoRemove unused paramter
Daniel Arndt [Wed, 28 Dec 2022 21:44:02 +0000 (22:44 +0100)]
Remove unused paramter

20 months agoUse Kokkos::abs
Daniel Arndt [Wed, 28 Dec 2022 21:43:59 +0000 (22:43 +0100)]
Use Kokkos::abs

20 months agoUse create_mirror_view_and_copy
Daniel Arndt [Wed, 28 Dec 2022 21:43:55 +0000 (22:43 +0100)]
Use create_mirror_view_and_copy

20 months agoRemove la_parallel_vector_cuda.cc
Daniel Arndt [Wed, 28 Dec 2022 21:43:53 +0000 (22:43 +0100)]
Remove la_parallel_vector_cuda.cc

20 months agoDon't initialize Views
Daniel Arndt [Wed, 28 Dec 2022 21:43:50 +0000 (22:43 +0100)]
Don't initialize Views

20 months agowqAnnotate Kokkos::parallel_for
Daniel Arndt [Wed, 28 Dec 2022 21:43:31 +0000 (22:43 +0100)]
wqAnnotate Kokkos::parallel_for

20 months agoAdd a changelog entry 14611/head
Jean-Paul Pelteret [Wed, 28 Dec 2022 19:32:15 +0000 (20:32 +0100)]
Add a changelog entry

20 months agoExtend hp support in FEInterfaceValues
Jean-Paul Pelteret [Fri, 23 Dec 2022 16:50:41 +0000 (17:50 +0100)]
Extend hp support in FEInterfaceValues

20 months agoExtend FEInterfaceValues::reinit() to take [q,mapping,fe]_index
Jean-Paul Pelteret [Tue, 20 Dec 2022 20:17:27 +0000 (21:17 +0100)]
Extend FEInterfaceValues::reinit() to take [q,mapping,fe]_index

20 months agoUse delegate constructors in FEInterfaceValues
Jean-Paul Pelteret [Tue, 20 Dec 2022 19:54:12 +0000 (20:54 +0100)]
Use delegate constructors in FEInterfaceValues

20 months agoMerge pull request #14618 from Rombur/fix_test_kokkos_memory_space
Daniel Arndt [Wed, 28 Dec 2022 17:20:33 +0000 (18:20 +0100)]
Merge pull request #14618 from Rombur/fix_test_kokkos_memory_space

20 months agoMerge pull request #14617 from jppelteret/bugfix_01
Daniel Arndt [Wed, 28 Dec 2022 08:21:44 +0000 (09:21 +0100)]
Merge pull request #14617 from jppelteret/bugfix_01

Fixes https://github.com/dealii/dealii/issues/14582

20 months agoMerge pull request #14616 from Rombur/fix_kokkos_memory_space
David Wells [Wed, 28 Dec 2022 02:30:13 +0000 (21:30 -0500)]
Merge pull request #14616 from Rombur/fix_kokkos_memory_space

Remove incorrect static_assert when using CUDA-aware MPI

20 months agoAdd ADOL-C back into serial Jenkins build 14617/head
Jean-Paul Pelteret [Tue, 27 Dec 2022 21:51:53 +0000 (22:51 +0100)]
Add ADOL-C back into serial Jenkins build

20 months agoFix free function specialisations for ADOL-C types
Jean-Paul Pelteret [Tue, 27 Dec 2022 21:46:21 +0000 (22:46 +0100)]
Fix free function specialisations for ADOL-C types

20 months agoFix ADOL-C tests broken by presence of static variables.
Jean-Paul Pelteret [Tue, 27 Dec 2022 21:42:59 +0000 (22:42 +0100)]
Fix ADOL-C tests broken by presence of static variables.

20 months agoFix test output: replace CUDA with Default 14618/head
Bruno Turcksin [Tue, 27 Dec 2022 19:55:19 +0000 (14:55 -0500)]
Fix test output: replace CUDA with Default

20 months agoRemove incorrect static_assert when using CUDA-aware MPI 14616/head
Bruno Turcksin [Tue, 27 Dec 2022 19:09:31 +0000 (14:09 -0500)]
Remove incorrect static_assert when using CUDA-aware MPI

20 months agoMerge pull request #14576 from tjhei/jenkins-new-serial
Matthias Maier [Tue, 27 Dec 2022 16:47:40 +0000 (10:47 -0600)]
Merge pull request #14576 from tjhei/jenkins-new-serial

CI: new serial Jenkins

20 months agodisable adolc tests 14576/head
Timo Heister [Sun, 18 Dec 2022 21:13:11 +0000 (16:13 -0500)]
disable adolc tests

20 months agoCI: new serial Jenkins
Timo Heister [Wed, 14 Dec 2022 19:14:40 +0000 (14:14 -0500)]
CI: new serial Jenkins

Move the serial tester to ci.tjhei.info.

update

20 months agoMerge pull request #14615 from tamiko/fix_prm_concurrency
Matthias Maier [Tue, 27 Dec 2022 00:07:55 +0000 (18:07 -0600)]
Merge pull request #14615 from tamiko/fix_prm_concurrency

CMake: avoid race conditions between concurrent prm tests

20 months agoCMake: avoid race conditions between concurrent prm tests 14615/head
Matthias Maier [Mon, 26 Dec 2022 04:01:03 +0000 (22:01 -0600)]
CMake: avoid race conditions between concurrent prm tests

We need to serialize all tests that share a common executable target.
This involves tests with .threads=N. and .mpirun=N. annotation, as well
as tests with parameter files (that might share a common executable
target).

Running multiple variants of tests with the same target executable in
parallel triggers a race condition where the same (not yet existent)
target is built concurrently leading to undefined outcomes.

20 months agoCMake: remove old prm-test workarounds
Matthias Maier [Mon, 26 Dec 2022 03:45:01 +0000 (21:45 -0600)]
CMake: remove old prm-test workarounds

20 months agoMerge pull request #14614 from drwells/isotropic-refinement-cleanup
Peter Munch [Sun, 25 Dec 2022 07:32:42 +0000 (08:32 +0100)]
Merge pull request #14614 from drwells/isotropic-refinement-cleanup

Isotropic refinement cleanup

20 months agoisotropic refinement: clean up some more comments. 14614/head
David Wells [Sat, 24 Dec 2022 21:09:33 +0000 (16:09 -0500)]
isotropic refinement: clean up some more comments.

20 months agoMerge pull request #14613 from bangerth/doc-87
David Wells [Sat, 24 Dec 2022 21:02:42 +0000 (16:02 -0500)]
Merge pull request #14613 from bangerth/doc-87

Better indent documentation of class Function.

20 months agoisotropic refinement: convert to unsigned int.
David Wells [Sat, 24 Dec 2022 20:59:14 +0000 (15:59 -0500)]
isotropic refinement: convert to unsigned int.

20 months agoisotropic refinement: get rid of 'if (true)'.
David Wells [Sat, 24 Dec 2022 20:53:56 +0000 (15:53 -0500)]
isotropic refinement: get rid of 'if (true)'.

20 months agoisotropic refinement: clean up some comments.
David Wells [Sat, 24 Dec 2022 20:53:08 +0000 (15:53 -0500)]
isotropic refinement: clean up some comments.

20 months agoisotropic refinement: add some more test output.
David Wells [Sat, 24 Dec 2022 20:51:18 +0000 (15:51 -0500)]
isotropic refinement: add some more test output.

These don't print anything because the lines are all consistently oriented.

20 months agoisotropic refinement: remove some extra dealii:: qualifications.
David Wells [Sat, 24 Dec 2022 20:50:07 +0000 (15:50 -0500)]
isotropic refinement: remove some extra dealii:: qualifications.

20 months agoBetter indent documentation of class Function. 14613/head
Wolfgang Bangerth [Sat, 24 Dec 2022 18:13:53 +0000 (11:13 -0700)]
Better indent documentation of class Function.

20 months agoMerge pull request #14600 from luca-heltai/changelog_hp_feiv
Peter Munch [Sat, 24 Dec 2022 10:42:07 +0000 (11:42 +0100)]
Merge pull request #14600 from luca-heltai/changelog_hp_feiv

Add changelog for hp support in fe_interface_values

20 months agoAdd changelog for hp-fe_interface_values 14600/head
Marco Feder [Tue, 20 Dec 2022 23:47:54 +0000 (00:47 +0100)]
Add changelog for hp-fe_interface_values

20 months agoMerge pull request #14612 from tjhei/tridiagonal_mat_cleanup
Peter Munch [Sat, 24 Dec 2022 08:43:39 +0000 (09:43 +0100)]
Merge pull request #14612 from tjhei/tridiagonal_mat_cleanup

small cleanup in tridiagonal_matrix.cc

20 months agosmall cleanup in tridiagonal_matrix.cc 14612/head
Timo Heister [Fri, 23 Dec 2022 19:24:27 +0000 (14:24 -0500)]
small cleanup in tridiagonal_matrix.cc

20 months agoMerge pull request #14603 from peterrum/warning
Daniel Arndt [Thu, 22 Dec 2022 00:07:31 +0000 (19:07 -0500)]
Merge pull request #14603 from peterrum/warning

20 months agoMerge pull request #14593 from drwells/compress-face-and-line-data
Timo Heister [Wed, 21 Dec 2022 19:19:40 +0000 (14:19 -0500)]
Merge pull request #14593 from drwells/compress-face-and-line-data

Compress face and line data

20 months agoFix warning 14603/head
Peter Munch [Wed, 21 Dec 2022 17:13:50 +0000 (18:13 +0100)]
Fix warning

20 months agoMerge pull request #14598 from masterleinad/dont_install_mold
David Wells [Wed, 21 Dec 2022 16:11:20 +0000 (11:11 -0500)]
Merge pull request #14598 from masterleinad/dont_install_mold

Don't install mold linker in CI

20 months agoMerge pull request #14592 from luca-heltai/petsc-block-matrix-to-nestmat
David Wells [Wed, 21 Dec 2022 16:09:48 +0000 (11:09 -0500)]
Merge pull request #14592 from luca-heltai/petsc-block-matrix-to-nestmat

PETScWrappers:BlockSparseMatrix: create PETSc MATNEST

21 months agoMerge pull request #14575 from luca-heltai/petsc-mat-mpi-getter
David Wells [Wed, 21 Dec 2022 14:07:17 +0000 (09:07 -0500)]
Merge pull request #14575 from luca-heltai/petsc-mat-mpi-getter

Petsc mat mpi getter


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