]>
https://gitweb.dealii.org/ - dealii.git/log
Matthias Maier [Wed, 25 May 2022 21:40:45 +0000 (16:40 -0500)]
CMake: Make configure file naming consistent
Configure file are including and processed in alphabetical order.
However, in order to allow for feature dependencies we have to include
some configure files before others. We have solved this by numbering
some of the configure files in order to force them to be processed
before others.
This pull requests makes this numbering a bit more consistent by
- numbering _all_ of the configure files with a default number of 50,
and configure files that have to be processed earlier taking up a
number between 40 and 00.
- increasing the numbering from one digit to two digits to accomodate
a possible future need to adjust the inclusion order a bit better.
Martin Kronbichler [Thu, 26 May 2022 13:45:00 +0000 (15:45 +0200)]
Merge pull request #13827 from tamiko/skip_boost_test
CMake: Skip expensive boost test
Martin Kronbichler [Thu, 26 May 2022 13:44:48 +0000 (15:44 +0200)]
Merge pull request #13825 from bangerth/ca-decl
Fix the function declaration a doc string is attached to.
Daniel Arndt [Thu, 26 May 2022 13:34:06 +0000 (09:34 -0400)]
Merge pull request #13787 from drwells/sundials-ida-tolerance
Daniel Arndt [Thu, 26 May 2022 13:22:40 +0000 (09:22 -0400)]
Merge pull request #13831 from bangerth/rule-of-3
Provide a defaulted copy operator.
Wolfgang Bangerth [Thu, 26 May 2022 03:36:14 +0000 (21:36 -0600)]
Provide a defaulted copy operator.
Wolfgang Bangerth [Thu, 26 May 2022 00:00:20 +0000 (18:00 -0600)]
Merge pull request #13512 from gfcas/constant_modes_doc
Update constant_modes doc
Martin Kronbichler [Wed, 25 May 2022 23:52:54 +0000 (01:52 +0200)]
Merge pull request #13769 from bangerth/ca-remove
Deprecate ConsensusAlgorithms::AnonymousProcess.
Martin Kronbichler [Wed, 25 May 2022 23:52:16 +0000 (01:52 +0200)]
Merge pull request #13768 from bangerth/ca-template
Consensus Algorithms: Move template functions into .h file.
Martin Kronbichler [Wed, 25 May 2022 23:28:40 +0000 (01:28 +0200)]
Merge pull request #13818 from tamiko/doxygen_quoting_issues
Step-40: Remove an unmatched single quote
Wolfgang Bangerth [Wed, 25 May 2022 23:23:51 +0000 (17:23 -0600)]
Merge pull request #13815 from mschreter/json_demangle_2
ParameterHandler::print_parameters(): Demangle JSON
Matthias Maier [Wed, 25 May 2022 23:07:23 +0000 (18:07 -0500)]
CMake: Skip expensive boost test
This has been finally fixed upstream sometime in late 2018 [1], and this
runtime check is very expensive. Let us skip it for a safe, good
version. I have chosen 1.74 semi randomly because it has been released
in 2020 and is the boost version found in Debian 11.
[1] https://github.com/boostorg/serialization/pull/79#issuecomment-
439726837
Wolfgang Bangerth [Wed, 25 May 2022 22:09:01 +0000 (16:09 -0600)]
Fix the function declaration a doc string is attached to.
David Wells [Wed, 25 May 2022 21:15:43 +0000 (17:15 -0400)]
Merge pull request #13812 from kronbichler/simplify_code
Remove unnecessary MPI barriers
Wolfgang Bangerth [Wed, 25 May 2022 18:40:45 +0000 (12:40 -0600)]
Merge pull request #13811 from kronbichler/add_another_pack
Optimize Utilities::pack for std::vector<std::vector<trivial>>
Wolfgang Bangerth [Wed, 25 May 2022 18:32:05 +0000 (12:32 -0600)]
Deprecate the ConsensusAlgorithms::AnonymousProcess class.
Wolfgang Bangerth [Wed, 25 May 2022 18:28:24 +0000 (12:28 -0600)]
Consensus Algorithms: Move template functions into .h file.
Peter Munch [Wed, 25 May 2022 17:39:02 +0000 (19:39 +0200)]
Merge pull request #13798 from kronbichler/speedup_poly_eval
Provide function to evaluate polynomial on array of positions
Matthias Maier [Wed, 25 May 2022 17:20:02 +0000 (12:20 -0500)]
Step-40: Remove an unmatched single quote
Peter Munch [Wed, 25 May 2022 16:03:15 +0000 (18:03 +0200)]
Merge pull request #13802 from kronbichler/simplify_grid_tools
Avoid CellDataTransferBuffer in GridTools::exchange_cell_data_to_ghosts
Peter Munch [Wed, 25 May 2022 14:36:33 +0000 (16:36 +0200)]
Merge pull request #13813 from kronbichler/fix_compile2
Utilities: Fix compile error on certain compilers
Martin Kronbichler [Mon, 23 May 2022 18:45:20 +0000 (20:45 +0200)]
Provide function to evaluate polynomial on array of positions
Magdalena Schreter [Mon, 23 May 2022 21:36:08 +0000 (23:36 +0200)]
Demangle json during output
Co-authored-by: Peter Munch <peterrmuench@gmail.com>
Peter Munch [Wed, 25 May 2022 12:10:41 +0000 (14:10 +0200)]
Merge pull request #13790 from kronbichler/simplify_reinit_shape_info
MatrixFree: Simplify initialization of ShapeInfo
Peter Munch [Wed, 25 May 2022 12:01:35 +0000 (14:01 +0200)]
Merge pull request #13800 from kronbichler/simplify_grid_partitioners
Slightly simplify setup of partitioners for global cell ids
Peter Munch [Wed, 25 May 2022 11:39:37 +0000 (13:39 +0200)]
Merge pull request #13809 from kronbichler/adjust_test_output
Adjust output of tests using PreconditionChebyshev
Martin Kronbichler [Wed, 25 May 2022 11:22:59 +0000 (13:22 +0200)]
Utilities: Fix compile error on certain compilers
Martin Kronbichler [Wed, 25 May 2022 10:27:37 +0000 (12:27 +0200)]
Merge pull request #13810 from simonsticko/assert_hypercube_quadrature_generator
Assert reference cell is hypercube in Discrete*QuadratureGenerator
Martin Kronbichler [Wed, 25 May 2022 10:16:15 +0000 (12:16 +0200)]
Remove unnecessary MPI barriers
Martin Kronbichler [Wed, 25 May 2022 10:08:33 +0000 (12:08 +0200)]
Optimize Utilities::pack for std::vector<std::vector<trivial>>
Martin Kronbichler [Tue, 24 May 2022 11:18:42 +0000 (13:18 +0200)]
Avoid usage of CellDataTransferBuffer in GridTools::exchange_cell_data_to_ghosts
Simon Sticko [Wed, 25 May 2022 07:32:12 +0000 (09:32 +0200)]
Assert reference cell is hypercube in Discrete*QuadratureGenerator
Martin Kronbichler [Tue, 24 May 2022 11:09:27 +0000 (13:09 +0200)]
Slightly simplify setup of partitioners for global cell ids
Martin Kronbichler [Wed, 25 May 2022 06:01:07 +0000 (08:01 +0200)]
Adjust output of tests using PreconditionChebyshev
Marc Fehling [Tue, 24 May 2022 22:30:46 +0000 (16:30 -0600)]
Merge pull request #13788 from drwells/kinsol-sundials-6
Kinsol sundials 6
Marc Fehling [Tue, 24 May 2022 22:30:34 +0000 (16:30 -0600)]
Merge pull request #13786 from drwells/arkode-sundials-6
Fix ARKODE for SUNDIALS 6.
Daniel Arndt [Tue, 24 May 2022 20:07:11 +0000 (16:07 -0400)]
Merge pull request #13791 from kronbichler/reduce_cost_index_owner
Daniel Arndt [Tue, 24 May 2022 20:06:21 +0000 (16:06 -0400)]
Merge pull request #13803 from drwells/fix-doc-typos-11
Daniel Arndt [Tue, 24 May 2022 20:02:29 +0000 (16:02 -0400)]
Merge pull request #13804 from marcfehling/citelist
Fix doxygen entry Chronopoulos1989.
Marc Fehling [Tue, 24 May 2022 17:51:52 +0000 (11:51 -0600)]
Fix doxygen entry Chronopoulos1989.
Martin Kronbichler [Mon, 23 May 2022 10:07:59 +0000 (12:07 +0200)]
Reduce cost to set up dictionary for compute_index_owner
Martin Kronbichler [Mon, 23 May 2022 10:04:08 +0000 (12:04 +0200)]
MatrixFree: Simplify initialization of ShapeInfo
David Wells [Tue, 24 May 2022 16:08:11 +0000 (12:08 -0400)]
Fix some miscellaneous typos.
David Wells [Tue, 24 May 2022 14:47:27 +0000 (10:47 -0400)]
Merge pull request #13801 from kronbichler/speed_up_utilities_pack
Avoid a second copy in Utilities::pack for vector arguments
Martin Kronbichler [Tue, 24 May 2022 11:14:59 +0000 (13:14 +0200)]
Avoid a second copy in Utilities::pack for vector arguments
Martin Kronbichler [Tue, 24 May 2022 05:27:24 +0000 (07:27 +0200)]
Merge pull request #13796 from kronbichler/fix_test_novec_1
Fix two tests with vectorization disabled
David Wells [Mon, 23 May 2022 01:54:26 +0000 (21:54 -0400)]
Massively lower some IDA solver tolerances.
ida_02 presently fails with a numdiff difference of about 1e-6: this makes sense
since that's the provided solver tolerance. We can get consistent results by
making it a few orders of magnitude lower.
David Wells [Mon, 23 May 2022 02:35:16 +0000 (22:35 -0400)]
Use 'greater than or equal to' instead of 'not less than'.
David Wells [Mon, 23 May 2022 02:33:13 +0000 (22:33 -0400)]
Fix KINSOL for SUNDIALS 6.
David Wells [Tue, 24 May 2022 02:30:01 +0000 (22:30 -0400)]
Merge pull request #13797 from kronbichler/fix_test_novec_2
Fix bug in FEEvaluation without vectorization
Matthias Maier [Tue, 24 May 2022 00:49:04 +0000 (19:49 -0500)]
Merge pull request #13799 from kronbichler/fix_compile
Fix compilation of Utilities::pack with std::vector<bool>
Martin Kronbichler [Mon, 23 May 2022 21:06:04 +0000 (23:06 +0200)]
Fix compilation of Utilities::pack with std::vector<bool>
David Wells [Mon, 23 May 2022 21:01:42 +0000 (17:01 -0400)]
Merge pull request #13792 from kronbichler/chebyshev_power_iteration
PreconditionChebyshev: Implement power iteration for eigenvalue estimate
Martin Kronbichler [Mon, 23 May 2022 20:52:48 +0000 (22:52 +0200)]
Merge pull request #13784 from bangerth/pack-unpack
Optimize pack()/unpack() for std::vector<T> with trivially copyable T.
Martin Kronbichler [Mon, 23 May 2022 20:48:46 +0000 (22:48 +0200)]
Merge pull request #13795 from drwells/add-mpi-bool-instantiation
Add some missing MPI boolean instantiations.
Martin Kronbichler [Mon, 23 May 2022 18:35:47 +0000 (20:35 +0200)]
Fix bug in FEEvaluation without vectorization
Martin Kronbichler [Mon, 23 May 2022 18:32:07 +0000 (20:32 +0200)]
Fix two tests with vectorization disabled
Martin Kronbichler [Mon, 23 May 2022 17:49:23 +0000 (19:49 +0200)]
Merge pull request #13642 from NiklasWik/piola_matrix_free
Matrix-free Piola transformation for affine cells
David Wells [Mon, 23 May 2022 16:57:38 +0000 (12:57 -0400)]
Add some missing MPI boolean instantiations.
Martin Kronbichler [Mon, 23 May 2022 12:15:06 +0000 (14:15 +0200)]
Changelog
Martin Kronbichler [Mon, 23 May 2022 12:13:17 +0000 (14:13 +0200)]
Add test case
Martin Kronbichler [Mon, 23 May 2022 12:13:07 +0000 (14:13 +0200)]
PreconditionChebyshev: Implement power iteration for eigenvalue estimate
Martin Kronbichler [Mon, 23 May 2022 15:53:37 +0000 (17:53 +0200)]
Merge pull request #13789 from gfcas/reinit-argument
Clearify LA::d::BlockVector::reinit input argument
Martin Kronbichler [Mon, 23 May 2022 15:05:33 +0000 (17:05 +0200)]
Merge pull request #13611 from tjhei/add_big_mpi_compat
embed BigMPICompat library
Martin Kronbichler [Mon, 23 May 2022 13:09:51 +0000 (15:09 +0200)]
Merge pull request #13780 from dealii/dependabot/github_actions/docker/build-push-action-3
Bump docker/build-push-action from 2 to 3
Martin Kronbichler [Mon, 23 May 2022 12:18:51 +0000 (14:18 +0200)]
Merge pull request #13781 from dealii/dependabot/github_actions/actions/upload-artifact-3
Bump actions/upload-artifact from 1 to 3
Niklas Wik [Mon, 23 May 2022 11:04:08 +0000 (13:04 +0200)]
Avoid copy paste
Fix documentation
Martin Kronbichler [Mon, 23 May 2022 10:18:40 +0000 (12:18 +0200)]
Merge pull request #13777 from dealii/dependabot/github_actions/docker/login-action-2
Bump docker/login-action from 1 to 2
Martin Kronbichler [Mon, 23 May 2022 10:18:16 +0000 (12:18 +0200)]
Merge pull request #13778 from dealii/dependabot/github_actions/docker/setup-buildx-action-2
Bump docker/setup-buildx-action from 1 to 2
Martin Kronbichler [Mon, 23 May 2022 10:17:37 +0000 (12:17 +0200)]
Merge pull request #13779 from dealii/dependabot/github_actions/actions/cache-3
Bump actions/cache from 2 to 3
Martin Kronbichler [Mon, 23 May 2022 10:15:14 +0000 (12:15 +0200)]
Merge pull request #13783 from tamiko/fix_oneapi
TBB oneAPI: make global_control object static
Fabian Castelli [Mon, 23 May 2022 08:14:55 +0000 (10:14 +0200)]
Clearify LA::d::BlockVector::reinit input argument
David Wells [Mon, 23 May 2022 02:55:47 +0000 (22:55 -0400)]
Add a missing MPI_InitFinalize.
This is now required in SUNDIALS 6 since SUNContext objects duplicate MPI
communicators.
dependabot[bot] [Mon, 23 May 2022 02:40:40 +0000 (02:40 +0000)]
Bump docker/build-push-action from 2 to 3
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 2 to 3.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](https://github.com/docker/build-push-action/compare/v2...v3)
---
updated-dependencies:
- dependency-name: docker/build-push-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
dependabot[bot] [Mon, 23 May 2022 02:39:53 +0000 (02:39 +0000)]
Bump actions/upload-artifact from 1 to 3
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 1 to 3.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](https://github.com/actions/upload-artifact/compare/v1...v3)
---
updated-dependencies:
- dependency-name: actions/upload-artifact
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
dependabot[bot] [Mon, 23 May 2022 02:39:44 +0000 (02:39 +0000)]
Bump actions/cache from 2 to 3
Bumps [actions/cache](https://github.com/actions/cache) from 2 to 3.
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](https://github.com/actions/cache/compare/v2...v3)
---
updated-dependencies:
- dependency-name: actions/cache
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
dependabot[bot] [Mon, 23 May 2022 02:39:43 +0000 (02:39 +0000)]
Bump docker/login-action from 1 to 2
Bumps [docker/login-action](https://github.com/docker/login-action) from 1 to 2.
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](https://github.com/docker/login-action/compare/v1...v2)
---
updated-dependencies:
- dependency-name: docker/login-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
dependabot[bot] [Mon, 23 May 2022 02:38:54 +0000 (02:38 +0000)]
Bump docker/setup-buildx-action from 1 to 2
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 1 to 2.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](https://github.com/docker/setup-buildx-action/compare/v1...v2)
---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Marc Fehling [Mon, 23 May 2022 02:37:58 +0000 (20:37 -0600)]
Merge pull request #13785 from drwells/ignore-dependabot-name
Add an exception for commits from dependabot.
David Wells [Mon, 23 May 2022 01:43:42 +0000 (21:43 -0400)]
Fix ARKODE for SUNDIALS 6.
David Wells [Sun, 22 May 2022 23:21:10 +0000 (19:21 -0400)]
Merge pull request #13776 from bangerth/copyright-2
Give a shell script a proper suffix.
David Wells [Sun, 22 May 2022 23:09:05 +0000 (19:09 -0400)]
Add an exception for commits from dependabot.
Wolfgang Bangerth [Sun, 22 May 2022 21:22:24 +0000 (15:22 -0600)]
Add a changelog entry.
Wolfgang Bangerth [Sun, 22 May 2022 21:14:48 +0000 (15:14 -0600)]
Optimize pack()/unpack() for std::vector<T> with trivially copyable T.
Matthias Maier [Sun, 22 May 2022 20:45:28 +0000 (15:45 -0500)]
add a test
Matthias Maier [Sun, 22 May 2022 20:18:52 +0000 (15:18 -0500)]
TBB oneAPI: make global_control object static
tbb::global_control is a class that affects the specified behavior of
tbb during its lifetime. Thus, in order to set a global thread limit for
tbb we have to maintain the object throughout the execution of the
program. We do this by maintaining a static std::unique_ptr.
A std::unique_ptr is a good choice here because tbb::global_control does
not provide a mechanism to override its setting - we can only delete the
old and replace it with a new one.
Luca Heltai [Sun, 22 May 2022 17:34:32 +0000 (19:34 +0200)]
Merge pull request #13774 from marcfehling/dependabot
Added dependabot for github-actions.
Timo Heister [Sun, 22 May 2022 13:23:02 +0000 (09:23 -0400)]
Merge pull request #13775 from bangerth/copyright
Update copyright years.
Wolfgang Bangerth [Sun, 22 May 2022 03:27:54 +0000 (21:27 -0600)]
Merge pull request #13721 from tjhei/step-40-no-limit-io
step-40: update IO section
Wolfgang Bangerth [Sun, 22 May 2022 03:26:04 +0000 (21:26 -0600)]
Give a shell script a proper suffix.
Wolfgang Bangerth [Sun, 22 May 2022 03:23:38 +0000 (21:23 -0600)]
Update copyright years.
Wolfgang Bangerth [Sun, 22 May 2022 02:43:31 +0000 (20:43 -0600)]
Merge pull request #13765 from drwells/signed-tet-volume
Remove std::abs() from the tet volume calculation.
Wolfgang Bangerth [Sun, 22 May 2022 02:42:58 +0000 (20:42 -0600)]
Merge pull request #13766 from drwells/mixed-mesh-volume
Implement pyramid volume and fix wedge volume.
Marc Fehling [Sun, 22 May 2022 00:37:29 +0000 (18:37 -0600)]
Added dependabot for github-actions.
David Wells [Sat, 21 May 2022 23:58:48 +0000 (19:58 -0400)]
Merge pull request #13770 from gfcas/vector_tools_rhs
Minor code updates to create_right_hand_side
David Wells [Fri, 20 May 2022 21:02:13 +0000 (17:02 -0400)]
Implement pyramid volume and fix wedge volume.
David Wells [Fri, 20 May 2022 17:45:52 +0000 (13:45 -0400)]
Remove std::abs() from the tet volume calculation.
Fabian Castelli [Sat, 21 May 2022 09:53:30 +0000 (11:53 +0200)]
Minor code updates to create_right_hand_side
Peter Munch [Sat, 21 May 2022 16:36:16 +0000 (18:36 +0200)]
Merge pull request #13772 from tamiko/doxygen_fixes
Doxygen: Ensure that opening and closing glossary quotes are on the same line
Matthias Maier [Sat, 21 May 2022 15:55:12 +0000 (10:55 -0500)]
Doxygen: Ensure that opening and closing glossary quotes are on the same line
In the beginning the Universe was created. This has made a lot of
people very angry and has been widely regarded as a bad move.
Douglas Adams
Typeset in
Trocchi and Trocchi Bold Sans Serif.