]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
2 years agoadjust variable name 12830/head
Timo Heister [Fri, 15 Oct 2021 14:52:35 +0000 (10:52 -0400)]
adjust variable name

2 years agofix checkpointing for >4GB files
Timo Heister [Fri, 15 Oct 2021 03:05:53 +0000 (23:05 -0400)]
fix checkpointing for >4GB files

We incorrectly compute MPI_Offset for MPI IO for checkpointing using
SolutionTransfer using 32 bit indices, which means that files larger
than 4GB end up being corrupted.
This manifests in errors like

n error occurred in line <749> of file
<../source/distributed/tria_base.cc> in function
void dealii::parallel::DistributedTriangulationBase<dim,
spacedim>::load_attached_data(unsigned int, unsigned int, unsigned int,
const string&, unsigned int, unsigned int) [with int dim = 3; int
spacedim = 3; std::string = std::__cxx11::basic_string<char>]
The violated condition was:
(cell_rel.second == parallel::DistributedTriangulationBase<dim,
spacedim>::CELL_PERSIST)

part of #12752

2 years agoMerge pull request #12818 from kronbichler/remove_quadrature_formula_attribute
David Wells [Tue, 12 Oct 2021 19:08:57 +0000 (15:08 -0400)]
Merge pull request #12818 from kronbichler/remove_quadrature_formula_attribute

step-70: Remove quadrature_formula class attributes

2 years agoMerge pull request #12820 from gfcas/typos
Martin Kronbichler [Tue, 12 Oct 2021 18:59:51 +0000 (20:59 +0200)]
Merge pull request #12820 from gfcas/typos

Fix typos

2 years agoUpdate include/deal.II/hp/refinement.h 12820/head
Fabian Castelli [Tue, 12 Oct 2021 15:38:45 +0000 (17:38 +0200)]
Update include/deal.II/hp/refinement.h

Co-authored-by: Daniel Arndt <arndtd@ornl.gov>
2 years agoFix typo
Fabian Castelli [Tue, 12 Oct 2021 14:55:28 +0000 (16:55 +0200)]
Fix typo

2 years agoFix typos
Fabian Castelli [Tue, 12 Oct 2021 14:53:19 +0000 (16:53 +0200)]
Fix typos

2 years agostep-70: Remove quadrature_formula class attributes 12818/head
Martin Kronbichler [Tue, 12 Oct 2021 09:02:01 +0000 (11:02 +0200)]
step-70: Remove quadrature_formula class attributes

2 years agoMerge pull request #12803 from peterrum/va_initializer_list
Martin Kronbichler [Tue, 12 Oct 2021 08:55:43 +0000 (10:55 +0200)]
Merge pull request #12803 from peterrum/va_initializer_list

VectorizedArray: accept std::initializer_list

2 years agoMerge pull request #12812 from gfcas/step72-quadrature
Martin Kronbichler [Tue, 12 Oct 2021 08:52:49 +0000 (10:52 +0200)]
Merge pull request #12812 from gfcas/step72-quadrature

step-72: Remove double quadrature_formula definition

2 years agoMerge pull request #12810 from peterrum/rpt_tighten
Martin Kronbichler [Tue, 12 Oct 2021 08:47:29 +0000 (10:47 +0200)]
Merge pull request #12810 from peterrum/rpt_tighten

Extend RepartitioningPolicyTools::DefaultPolicy

2 years agoRemove double quadrature_formula definition 12812/head
Fabian Castelli [Fri, 8 Oct 2021 09:33:08 +0000 (11:33 +0200)]
Remove double quadrature_formula definition

2 years agoVectorizedArray: accept std::initializer_list 12803/head
Peter Munch [Fri, 8 Oct 2021 05:49:38 +0000 (07:49 +0200)]
VectorizedArray: accept std::initializer_list

2 years agoExtend RepartitioningPolicyTools::DefaultPolicy 12810/head
Peter Munch [Sat, 9 Oct 2021 17:40:44 +0000 (19:40 +0200)]
Extend RepartitioningPolicyTools::DefaultPolicy

2 years agoMerge pull request #12808 from bangerth/82
Matthias Maier [Sat, 9 Oct 2021 02:06:51 +0000 (21:06 -0500)]
Merge pull request #12808 from bangerth/82

Link step-82 into the tutorial page.

2 years agoLink step-82 into the tutorial page. 12808/head
Wolfgang Bangerth [Fri, 8 Oct 2021 21:42:00 +0000 (15:42 -0600)]
Link step-82 into the tutorial page.

2 years agoMerge pull request #12806 from tjhei/step-49-followup
Matthias Maier [Fri, 8 Oct 2021 18:23:07 +0000 (13:23 -0500)]
Merge pull request #12806 from tjhei/step-49-followup

some step-49 follow-ups

2 years agosome step-49 followups 12806/head
Timo Heister [Fri, 8 Oct 2021 16:11:25 +0000 (12:11 -0400)]
some step-49 followups

2 years agoMerge pull request #12804 from peterrum/step74-cellss
Peter Munch [Fri, 8 Oct 2021 15:19:34 +0000 (17:19 +0200)]
Merge pull request #12804 from peterrum/step74-cellss

Fix typo

2 years agoFix typo 12804/head
Peter Munch [Fri, 8 Oct 2021 14:00:40 +0000 (16:00 +0200)]
Fix typo

2 years agoMerge pull request #12798 from peterrum/gc_set_ghost_state
Peter Munch [Fri, 8 Oct 2021 08:51:39 +0000 (10:51 +0200)]
Merge pull request #12798 from peterrum/gc_set_ghost_state

Global coarsening: reset ghost state of internal vectors

2 years agoGlobal coarsening: reset ghost state of internal vectors 12798/head
Peter Munch [Thu, 7 Oct 2021 12:39:39 +0000 (14:39 +0200)]
Global coarsening: reset ghost state of internal vectors

2 years agoMerge pull request #12794 from bangerth/82
Matthias Maier [Fri, 8 Oct 2021 04:35:51 +0000 (23:35 -0500)]
Merge pull request #12794 from bangerth/82

Simplify code in step-82 a little bit.

2 years agoMerge pull request #12319 from singima/step-49
Matthias Maier [Fri, 8 Oct 2021 04:27:14 +0000 (23:27 -0500)]
Merge pull request #12319 from singima/step-49

Step 49 gmsh update

2 years agoMerge pull request #12802 from bangerth/doc-66
Matthias Maier [Fri, 8 Oct 2021 04:26:06 +0000 (23:26 -0500)]
Merge pull request #12802 from bangerth/doc-66

Better label documentation sections in sparse_matrix.h.

2 years agoMerge pull request #12801 from bangerth/ida
Matthias Maier [Fri, 8 Oct 2021 04:25:41 +0000 (23:25 -0500)]
Merge pull request #12801 from bangerth/ida

Minor adjustments to the IDA documentation.

2 years agoMerge pull request #12800 from bangerth/exc
Matthias Maier [Fri, 8 Oct 2021 04:25:20 +0000 (23:25 -0500)]
Merge pull request #12800 from bangerth/exc

Use an enum class in an internal namespace.

2 years agoMerge pull request #12799 from bangerth/arkode
Matthias Maier [Fri, 8 Oct 2021 04:24:41 +0000 (23:24 -0500)]
Merge pull request #12799 from bangerth/arkode

Minor edits to the ARKODE documentation.

2 years agoUpdate examples/step-82/step-82.cc 12794/head
Matthias Maier [Fri, 8 Oct 2021 04:19:36 +0000 (23:19 -0500)]
Update examples/step-82/step-82.cc

Co-authored-by: dianeguignard <78985256+dianeguignard@users.noreply.github.com>
2 years agoUpdate examples/step-82/step-82.cc
Matthias Maier [Fri, 8 Oct 2021 04:19:29 +0000 (23:19 -0500)]
Update examples/step-82/step-82.cc

Co-authored-by: dianeguignard <78985256+dianeguignard@users.noreply.github.com>
2 years agoUse an enum class in an internal namespace. 12800/head
Wolfgang Bangerth [Thu, 7 Oct 2021 23:28:18 +0000 (17:28 -0600)]
Use an enum class in an internal namespace.

Promote better scoping of names.

2 years agoBetter label documentation sections in sparse_matrix.h. 12802/head
Wolfgang Bangerth [Thu, 7 Oct 2021 23:27:33 +0000 (17:27 -0600)]
Better label documentation sections in sparse_matrix.h.

2 years agoMinor adjustments to the IDA documentation. 12801/head
Wolfgang Bangerth [Thu, 7 Oct 2021 23:26:55 +0000 (17:26 -0600)]
Minor adjustments to the IDA documentation.

2 years agoMinor edits to the ARKODE documentation. 12799/head
Wolfgang Bangerth [Thu, 7 Oct 2021 23:22:42 +0000 (17:22 -0600)]
Minor edits to the ARKODE documentation.

2 years agoMerge pull request #12795 from gfcas/doc_sol_trans
Marc Fehling [Thu, 7 Oct 2021 14:55:51 +0000 (08:55 -0600)]
Merge pull request #12795 from gfcas/doc_sol_trans

Update p:d:SolutionTransfer code snippets

2 years agoMerge pull request #12791 from tjhei/bug-eulerian-gmg
Martin Kronbichler [Thu, 7 Oct 2021 08:13:17 +0000 (10:13 +0200)]
Merge pull request #12791 from tjhei/bug-eulerian-gmg

MappingQEulerian GMG bug

2 years agoMerge pull request #12796 from gfcas/typo
Marc Fehling [Thu, 7 Oct 2021 06:15:24 +0000 (00:15 -0600)]
Merge pull request #12796 from gfcas/typo

Correct AssertMessage for FESeries::Legendre

2 years agoadd to other test 12791/head
Timo Heister [Wed, 6 Oct 2021 18:34:47 +0000 (14:34 -0400)]
add to other test

2 years agoCorrect AssertMessage for FESeries::Legendre 12796/head
Fabian Castelli [Wed, 6 Oct 2021 18:19:58 +0000 (20:19 +0200)]
Correct AssertMessage for FESeries::Legendre

2 years agofix bug
Timo Heister [Wed, 6 Oct 2021 15:04:46 +0000 (11:04 -0400)]
fix bug

2 years agoUpdate p:d:SolutionTransfer code snippets 12795/head
Fabian Castelli [Wed, 6 Oct 2021 13:59:07 +0000 (15:59 +0200)]
Update p:d:SolutionTransfer code snippets

2 years agoSimplify code in step-82 a little bit.
Wolfgang Bangerth [Wed, 6 Oct 2021 04:18:02 +0000 (22:18 -0600)]
Simplify code in step-82 a little bit.

2 years agoMerge pull request #12448 from dianeguignard/added-step-82
Wolfgang Bangerth [Wed, 6 Oct 2021 04:02:51 +0000 (22:02 -0600)]
Merge pull request #12448 from dianeguignard/added-step-82

Add tutorial program step-82

2 years agoMerge pull request #12792 from peterrum/create_right_hand_side_compress
Daniel Arndt [Tue, 5 Oct 2021 13:04:53 +0000 (09:04 -0400)]
Merge pull request #12792 from peterrum/create_right_hand_side_compress

2 years agoAdd missing compress() to VectorTools::create_right_hand_side() 12792/head
Peter Munch [Tue, 5 Oct 2021 07:13:27 +0000 (09:13 +0200)]
Add missing compress() to VectorTools::create_right_hand_side()

2 years agoMerge pull request #12790 from drwells/simplex-convert-refined
Martin Kronbichler [Tue, 5 Oct 2021 06:59:35 +0000 (08:59 +0200)]
Merge pull request #12790 from drwells/simplex-convert-refined

Permit conversion of multi-level triangulations to simplices.

2 years agoadd failing test
Timo Heister [Tue, 5 Oct 2021 02:53:14 +0000 (22:53 -0400)]
add failing test

2 years agoMerge pull request #12789 from sebproell/prm-parse-mandatory
David Wells [Mon, 4 Oct 2021 21:32:47 +0000 (17:32 -0400)]
Merge pull request #12789 from sebproell/prm-parse-mandatory

Fix bug in ParameterHandler::parse_input for .prm

2 years agoMerge pull request #12788 from sebproell/add-parameter-map-tuple
David Wells [Mon, 4 Oct 2021 21:32:33 +0000 (17:32 -0400)]
Merge pull request #12788 from sebproell/add-parameter-map-tuple

Test custom separators for Patterns::Map

2 years agoPermit conversion of multi-level triangulations to simplices. 12790/head
David Wells [Mon, 4 Oct 2021 19:26:14 +0000 (15:26 -0400)]
Permit conversion of multi-level triangulations to simplices.

2 years agoFix bug in ParameterHandler::parse_input for .prm 12789/head
Sebastian Proell [Mon, 4 Oct 2021 13:28:26 +0000 (15:28 +0200)]
Fix bug in ParameterHandler::parse_input for .prm

The entries_set_status was not updated when parsing from .prm files.

2 years agoMerge pull request #12785 from kronbichler/mapping_cartesian_internal_data
Martin Kronbichler [Mon, 4 Oct 2021 13:03:06 +0000 (15:03 +0200)]
Merge pull request #12785 from kronbichler/mapping_cartesian_internal_data

Mapping classes: Unify public/private properties

2 years agoTest custom separators for Patterns::Map 12788/head
Sebastian Proell [Sat, 19 Jun 2021 16:34:12 +0000 (18:34 +0200)]
Test custom separators for Patterns::Map

2 years agoMerge pull request #12786 from gassmoeller/fix_fepointevaluation_middle_component
Martin Kronbichler [Sun, 3 Oct 2021 18:36:46 +0000 (20:36 +0200)]
Merge pull request #12786 from gassmoeller/fix_fepointevaluation_middle_component

Fix FEPointEvaluation for non-zero starting component

2 years agoFix FEPointEvaluation for non-zero starting component 12786/head
Rene Gassmoeller [Fri, 1 Oct 2021 19:43:08 +0000 (15:43 -0400)]
Fix FEPointEvaluation for non-zero starting component

2 years agoMappingManifold: Do not expose the fill_fe_*values functions as public 12785/head
Martin Kronbichler [Fri, 1 Oct 2021 13:32:25 +0000 (15:32 +0200)]
MappingManifold: Do not expose the fill_fe_*values functions as public

2 years agoMappingQ: Make fill_fe_*values protected as in other mapping classes
Martin Kronbichler [Fri, 1 Oct 2021 13:27:04 +0000 (15:27 +0200)]
MappingQ: Make fill_fe_*values protected as in other mapping classes

2 years agoMake MappingCartesian::InternalData public
Martin Kronbichler [Fri, 1 Oct 2021 13:25:57 +0000 (15:25 +0200)]
Make MappingCartesian::InternalData public

2 years agoMerge pull request #12784 from gfcas/doc_typo
Daniel Arndt [Thu, 30 Sep 2021 13:30:46 +0000 (09:30 -0400)]
Merge pull request #12784 from gfcas/doc_typo

2 years agoFix typo in ScratchData doc 12784/head
Fabian Castelli [Thu, 30 Sep 2021 12:59:38 +0000 (14:59 +0200)]
Fix typo in ScratchData doc

2 years agoMerge pull request #12783 from peterrum/apply_hanging_node_constraints_protected
Peter Munch [Wed, 29 Sep 2021 13:38:51 +0000 (15:38 +0200)]
Merge pull request #12783 from peterrum/apply_hanging_node_constraints_protected

Make FEEvaluationBase::apply_hanging_node_constraints protected

2 years agofixed indent 12448/head
Diane Guignard [Tue, 28 Sep 2021 21:51:10 +0000 (17:51 -0400)]
fixed indent

2 years agoIncluded other suggestions from P. Munch
Diane Guignard [Thu, 23 Sep 2021 15:36:20 +0000 (11:36 -0400)]
Included other suggestions from P. Munch

2 years agoFixed typo intro and updated references
Diane Guignard [Thu, 23 Sep 2021 15:15:10 +0000 (11:15 -0400)]
Fixed typo intro and updated references

2 years agoRemove second DoFHandler
Peter Munch [Thu, 23 Sep 2021 05:01:23 +0000 (07:01 +0200)]
Remove second DoFHandler

2 years agoUrl references and fixed error
Diane Guignard [Fri, 17 Sep 2021 22:29:53 +0000 (18:29 -0400)]
Url references and fixed error

2 years agoMinor updates in intro and results
Diane Guignard [Sat, 11 Sep 2021 22:09:12 +0000 (18:09 -0400)]
Minor updates in intro and results

2 years agoSmall adjustments to the step-82.cc file.
Wolfgang Bangerth [Fri, 3 Sep 2021 21:20:11 +0000 (15:20 -0600)]
Small adjustments to the step-82.cc file.

2 years agoAdd table for k=3 to the results section.
Wolfgang Bangerth [Fri, 3 Sep 2021 19:26:59 +0000 (13:26 -0600)]
Add table for k=3 to the results section.

2 years agoAdjust whitespace at the end of lines.
Wolfgang Bangerth [Fri, 3 Sep 2021 19:19:44 +0000 (13:19 -0600)]
Adjust whitespace at the end of lines.

2 years agoMinor edits to the conclusions section of step-82.
Wolfgang Bangerth [Fri, 3 Sep 2021 04:23:01 +0000 (22:23 -0600)]
Minor edits to the conclusions section of step-82.

2 years agoUse the usual style in main().
Wolfgang Bangerth [Fri, 3 Sep 2021 04:20:24 +0000 (22:20 -0600)]
Use the usual style in main().

2 years agoMinor edits to the introduction of step-82.
Wolfgang Bangerth [Fri, 3 Sep 2021 03:58:40 +0000 (21:58 -0600)]
Minor edits to the introduction of step-82.

2 years agoAdded tutorial program step-82
Diane Guignard [Mon, 28 Jun 2021 18:41:51 +0000 (14:41 -0400)]
Added tutorial program step-82

2 years agoMake FEEvaluationBase::apply_hanging_node_constraints protected 12783/head
Peter Munch [Wed, 29 Sep 2021 08:25:49 +0000 (10:25 +0200)]
Make FEEvaluationBase::apply_hanging_node_constraints protected

2 years agoMerge pull request #12782 from kronbichler/master
Peter Munch [Tue, 28 Sep 2021 21:11:58 +0000 (23:11 +0200)]
Merge pull request #12782 from kronbichler/master

Avoid set but unused variable

2 years agoAvoid set but unused variable 12782/head
Martin Kronbichler [Tue, 28 Sep 2021 19:12:41 +0000 (21:12 +0200)]
Avoid set but unused variable

2 years agoMerge pull request #12779 from peterrum/use_fast_hanging_node_algorithm
Martin Kronbichler [Tue, 28 Sep 2021 18:29:35 +0000 (20:29 +0200)]
Merge pull request #12779 from peterrum/use_fast_hanging_node_algorithm

Allow to disable fast matrix-free hanging-node algorithm

2 years agoMerge pull request #12761 from masterleinad/instantiate_local_apply_boundary_values_c...
Daniel Arndt [Tue, 28 Sep 2021 18:09:17 +0000 (14:09 -0400)]
Merge pull request #12761 from masterleinad/instantiate_local_apply_boundary_values_complex_values

Instantiate MatrixTools::apply_boundary_values also for complex values

2 years agoMerge pull request #12778 from peterrum/evaluation_template_factory_split
Peter Munch [Tue, 28 Sep 2021 14:28:52 +0000 (16:28 +0200)]
Merge pull request #12778 from peterrum/evaluation_template_factory_split

Split up evaluation_template_factory

2 years agoAdd test 12761/head
Daniel Arndt [Mon, 20 Sep 2021 14:28:53 +0000 (10:28 -0400)]
Add test

2 years agoAllow to disable fast matrix-free hanging-node algorithm 12779/head
Peter Munch [Tue, 28 Sep 2021 13:05:09 +0000 (15:05 +0200)]
Allow to disable fast matrix-free hanging-node algorithm

2 years agoSplit up evaluation_template_factory 12778/head
Peter Munch [Tue, 28 Sep 2021 10:51:56 +0000 (12:51 +0200)]
Split up evaluation_template_factory

2 years agofix format error 12319/head
Timo Heister [Sun, 26 Sep 2021 17:01:19 +0000 (13:01 -0400)]
fix format error

2 years agoMerge pull request #12776 from peterrum/ide_comment
Martin Kronbichler [Sat, 25 Sep 2021 16:07:42 +0000 (18:07 +0200)]
Merge pull request #12776 from peterrum/ide_comment

Remove an IDE comment

2 years agoindent
Timo Heister [Sat, 25 Sep 2021 14:37:42 +0000 (10:37 -0400)]
indent

2 years agostep-49 gmsh
Sean Ingimarson [Thu, 1 Apr 2021 14:33:32 +0000 (07:33 -0700)]
step-49 gmsh

2 years agoRemove an IDE comment 12776/head
Peter Munch [Sat, 25 Sep 2021 12:14:52 +0000 (14:14 +0200)]
Remove an IDE comment

2 years agoMerge pull request #12773 from gassmoeller/add_mappingcartesian_fepointevaluation
Martin Kronbichler [Fri, 24 Sep 2021 09:21:02 +0000 (11:21 +0200)]
Merge pull request #12773 from gassmoeller/add_mappingcartesian_fepointevaluation

Support MappingCartesian in FEPointEvaluation

2 years agoSupport MappingCartesian in FEPointEvaluation 12773/head
Rene Gassmoeller [Wed, 22 Sep 2021 22:35:42 +0000 (18:35 -0400)]
Support MappingCartesian in FEPointEvaluation

2 years agoMerge pull request #12772 from peterrum/subface_interpolation_matrices
Peter Munch [Thu, 23 Sep 2021 11:43:41 +0000 (13:43 +0200)]
Merge pull request #12772 from peterrum/subface_interpolation_matrices

ShapeInfo: store both subface interpolation matrices

2 years agoShapeInfo: store both subface interpolation matrices 12772/head
Peter Munch [Thu, 23 Sep 2021 07:03:43 +0000 (09:03 +0200)]
ShapeInfo: store both subface interpolation matrices

2 years agoMerge pull request #12770 from bangerth/ref
Marc Fehling [Tue, 21 Sep 2021 20:55:10 +0000 (14:55 -0600)]
Merge pull request #12770 from bangerth/ref

Fix two bibtex entries.

2 years agoFix two bibtex entries. 12770/head
Wolfgang Bangerth [Mon, 20 Sep 2021 03:46:40 +0000 (21:46 -0600)]
Fix two bibtex entries.

For one, add a DOI. For the other, remove the 'type' field: There is no
reason why this shouldn't just be printed as a 'PhD thesis'.

3 years agoMerge pull request #12769 from zjiaqi2018/matrix-free-documentation
Martin Kronbichler [Mon, 20 Sep 2021 06:55:16 +0000 (08:55 +0200)]
Merge pull request #12769 from zjiaqi2018/matrix-free-documentation

matrix-free documentation

3 years agoMerge pull request #12767 from peterrum/HangingNodes_artificial_neighbors
Martin Kronbichler [Mon, 20 Sep 2021 06:54:32 +0000 (08:54 +0200)]
Merge pull request #12767 from peterrum/HangingNodes_artificial_neighbors

HangingNodes: ignore artificial neighbors

3 years agoHangingNodes: ignore artificial neighbors 12767/head
Peter Munch [Sat, 18 Sep 2021 18:11:32 +0000 (20:11 +0200)]
HangingNodes: ignore artificial neighbors

3 years agoMerge pull request #12768 from kronbichler/mf_no_inner_faces
Peter Munch [Sun, 19 Sep 2021 06:52:09 +0000 (08:52 +0200)]
Merge pull request #12768 from kronbichler/mf_no_inner_faces

MatrixFree: Do not build inner face data if not requested

3 years agoimprove documentation 12769/head
Jiaqi Zhang [Sun, 19 Sep 2021 00:45:57 +0000 (00:45 +0000)]
improve documentation

3 years agoNew test case 12768/head
Martin Kronbichler [Sat, 18 Sep 2021 19:58:34 +0000 (21:58 +0200)]
New test case


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