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https://gitweb.dealii.org/ - dealii.git/log
Martin Kronbichler [Mon, 5 Jul 2021 15:31:37 +0000 (17:31 +0200)]
Merge pull request #12541 from bangerth/rename-2
No longer require active_fe_index when calling cell->vertex_dof_index().
Peter Munch [Mon, 5 Jul 2021 15:25:18 +0000 (17:25 +0200)]
Merge pull request #12538 from peterrum/ghosts_set
MatrixFree: optional assert to prevent ghosted vectors in loop
Peter Munch [Fri, 2 Jul 2021 09:14:23 +0000 (11:14 +0200)]
MatrixFree: optional assert to prevent ghosted vectors in loop
Martin Kronbichler [Mon, 5 Jul 2021 09:55:38 +0000 (11:55 +0200)]
Merge pull request #12543 from bangerth/34
Avoid a memory leak in step-34.
Wolfgang Bangerth [Sun, 4 Jul 2021 04:58:23 +0000 (22:58 -0600)]
Avoid a qualified name to make sure doxygen doesn't try to
find a target for it.
Wolfgang Bangerth [Sun, 4 Jul 2021 04:41:18 +0000 (22:41 -0600)]
Add a changelog entry.
Wolfgang Bangerth [Sun, 4 Jul 2021 04:40:57 +0000 (22:40 -0600)]
Avoid a memory leak in step-34.
David Wells [Sun, 4 Jul 2021 01:02:03 +0000 (21:02 -0400)]
Merge pull request #12539 from peterrum/CellIDTranslator_cleanup
Clean up in CellIDTranslator
David Wells [Sat, 3 Jul 2021 21:22:28 +0000 (17:22 -0400)]
Merge pull request #12537 from peterrum/Convert_assert
Improve assert message in Convert
Peter Munch [Sat, 3 Jul 2021 20:07:19 +0000 (22:07 +0200)]
Merge pull request #12531 from peterrum/multigrid_new_signals
Add new signals to Multigrid
Peter Munch [Fri, 2 Jul 2021 09:47:08 +0000 (11:47 +0200)]
Clean up in CellIDTranslator
David Wells [Sat, 3 Jul 2021 16:53:29 +0000 (12:53 -0400)]
Merge pull request #12540 from peterrum/gc_simplify
Simplify GC code a bit
Wolfgang Bangerth [Fri, 2 Jul 2021 23:28:03 +0000 (17:28 -0600)]
Add a changelog entry.
Wolfgang Bangerth [Fri, 2 Jul 2021 23:26:07 +0000 (17:26 -0600)]
Add a test.
Wolfgang Bangerth [Fri, 2 Jul 2021 23:25:56 +0000 (17:25 -0600)]
No longer require active_fe_index when calling cell->vertex_dof_index().
Wolfgang Bangerth [Fri, 2 Jul 2021 23:05:10 +0000 (17:05 -0600)]
Merge pull request #12536 from peterrum/assert_process_dof_index
Improve an assert message in DoFAccessorImplementation
Peter Munch [Fri, 2 Jul 2021 19:41:54 +0000 (21:41 +0200)]
Simplify GC code a bit
Peter Munch [Thu, 1 Jul 2021 13:09:28 +0000 (15:09 +0200)]
Add new signals to Multigrid
Peter Munch [Fri, 2 Jul 2021 07:13:00 +0000 (09:13 +0200)]
Improve an asser message in DoFAccessorImplementation
Martin Kronbichler [Fri, 2 Jul 2021 14:59:28 +0000 (16:59 +0200)]
Merge pull request #12408 from peterrum/DataOutResample
Add DataOutResample
David Wells [Fri, 2 Jul 2021 14:23:50 +0000 (10:23 -0400)]
Merge pull request #12532 from zjiaqi2018/fix_read_msh
fix assert for read_msh()
David Wells [Fri, 2 Jul 2021 14:23:34 +0000 (10:23 -0400)]
Merge pull request #12535 from bangerth/rename
Rename and document a template argument.
Peter Munch [Fri, 2 Jul 2021 07:45:43 +0000 (09:45 +0200)]
Improve assert message in Convert
Peter Munch [Fri, 2 Jul 2021 06:34:25 +0000 (08:34 +0200)]
Merge pull request #12530 from peterrum/level_v_step_prolongate_and_add
Use prolongate_and_add() in Multigrid::level_v_step()
Matthias Maier [Fri, 2 Jul 2021 00:51:52 +0000 (19:51 -0500)]
Merge pull request #12503 from gassmoeller/define_ndebug_in_release
Define NDEBUG in release mode
Wolfgang Bangerth [Thu, 1 Jul 2021 21:43:53 +0000 (15:43 -0600)]
Merge pull request #12533 from marcfehling/step-79
step-79: Avoid using constructor which are incompatible to Intel 18.
Wolfgang Bangerth [Thu, 1 Jul 2021 21:18:03 +0000 (15:18 -0600)]
Rename and document a template argument.
Rene Gassmoeller [Sat, 26 Jun 2021 15:55:01 +0000 (11:55 -0400)]
Define NDEBUG in release mode
Marc Fehling [Thu, 1 Jul 2021 18:43:24 +0000 (12:43 -0600)]
step-79: Avoid using constructor which are incompatible to Intel 18.
Jiaqi Zhang [Thu, 1 Jul 2021 14:48:55 +0000 (14:48 +0000)]
fix assert for 2d mesh
Peter Munch [Thu, 1 Jul 2021 13:04:32 +0000 (15:04 +0200)]
Use prolongate_and_add() in Multigrid::level_v_step()
Martin Kronbichler [Thu, 1 Jul 2021 07:28:39 +0000 (09:28 +0200)]
Merge pull request #12498 from drwells/p-d-vector-swap
Add a move ctor for p::d::Vector.
Martin Kronbichler [Thu, 1 Jul 2021 05:19:54 +0000 (07:19 +0200)]
Merge pull request #12529 from marcfehling/typo
CellIDTranslator: Fix typo in assert.
Martin Kronbichler [Thu, 1 Jul 2021 05:17:08 +0000 (07:17 +0200)]
Merge pull request #12528 from tamiko/update_changelog_master
[Main branch] reorganize changelog entries for point release
Marc Fehling [Wed, 30 Jun 2021 22:44:43 +0000 (16:44 -0600)]
Fix typo in assert.
Matthias Maier [Wed, 30 Jun 2021 20:54:28 +0000 (15:54 -0500)]
remove dummy entries
Matthias Maier [Wed, 30 Jun 2021 20:46:20 +0000 (15:46 -0500)]
reorganize changelog entries for point release
- create 9.3.0-vs-9.3.1.h file
- remove individual entries
David Wells [Wed, 30 Jun 2021 13:15:31 +0000 (09:15 -0400)]
Merge pull request #12523 from tjhei/gcc11_boost_warn
silence gcc 11 warning
Martin Kronbichler [Wed, 30 Jun 2021 09:59:12 +0000 (11:59 +0200)]
Merge pull request #12520 from peterrum/CellWeightPolicy_type
CellWeightPolicy: global_cell_index->uint64_t
Peter Munch [Wed, 30 Jun 2021 09:58:19 +0000 (11:58 +0200)]
Merge pull request #12526 from kronbichler/fix_particle_compile
Make particle_handler.cc compile again
Martin Kronbichler [Wed, 30 Jun 2021 08:15:17 +0000 (10:15 +0200)]
Make particle_handler.cc compile again
Martin Kronbichler [Wed, 30 Jun 2021 05:17:38 +0000 (07:17 +0200)]
Merge pull request #12450 from gassmoeller/simplify_transfer_particle_handler
Simplify particle transfer during refinement/serialization
Martin Kronbichler [Wed, 30 Jun 2021 05:05:33 +0000 (07:05 +0200)]
Merge pull request #12521 from drwells/improve-is-ghost-docs
Improve the documentation of TriaAccessor::is_ghost().
Timo Heister [Tue, 29 Jun 2021 22:09:54 +0000 (18:09 -0400)]
silence gcc 11 warning
silence boost warning
../bundled/boost-1.70.0/include/boost/concept/usage.hpp:16:48: warning:
'this' pointer is null [-Wnonnull]
16 | ~usage_requirements() { ((Model*)0)->~Model(); }
David Wells [Tue, 29 Jun 2021 21:49:56 +0000 (17:49 -0400)]
Merge pull request #12515 from tamiko/revert_gcc11_fixes
Guard GCC 11 fixes for intel 18/19 compatibility
Martin Kronbichler [Tue, 29 Jun 2021 20:02:04 +0000 (22:02 +0200)]
Merge pull request #12484 from peterrum/MGTwoLevelTransfer_reinit
Introduce MGTwoLevelTransfer::reinit()
Martin Kronbichler [Tue, 29 Jun 2021 19:59:49 +0000 (21:59 +0200)]
Merge pull request #12513 from peterrum/CellIDTranslator_warning
CellIDTranslator:: add assert to prevent overflow
Matthias Maier [Tue, 29 Jun 2021 16:16:47 +0000 (11:16 -0500)]
add a news entry
Matthias Maier [Tue, 29 Jun 2021 15:18:41 +0000 (10:18 -0500)]
Tensor: refactor constructor and assignment operator guards
* This commit guards some constructors and copy/move assignment
operators that are necessary to work around a gcc 11 regression with
DEAL_II_DELETED_MOVE_CONSTRUCTOR_BUG.
* Add back explicitly guarded constructor working around a code
generation issue with intel compilers
Matthias Maier [Tue, 29 Jun 2021 16:13:13 +0000 (11:13 -0500)]
CMake: Add a configuration check for DEAL_II_DELETED_MOVE_CONSTRUCTOR_BUG
David Wells [Tue, 29 Jun 2021 14:23:23 +0000 (10:23 -0400)]
Improve the documentation of TriaAccessor::is_ghost().
The documentation isn't quite right for p::s::T. Now that we have three parallel
Triangulation classes we should be a bit more careful in describing some of
their distinctions.
Peter Munch [Mon, 28 Jun 2021 10:09:24 +0000 (12:09 +0200)]
CellIDTranslator:: add assert to prevent overflow
David Wells [Tue, 29 Jun 2021 12:49:06 +0000 (08:49 -0400)]
Merge pull request #12517 from peterrum/tria_serialization_fix
Fix serialization of Triangulation
Peter Munch [Tue, 29 Jun 2021 10:17:28 +0000 (12:17 +0200)]
CellWeightPolicy: global_cell_index->uint64_t
Peter Munch [Tue, 22 Jun 2021 07:40:05 +0000 (09:40 +0200)]
Introduce MGTwoLevelTransfer::reinit()
Peter Munch [Tue, 29 Jun 2021 08:34:30 +0000 (10:34 +0200)]
Merge pull request #12502 from peterrum/n_global_coarse_cells
Add Triangulation::n_global_coarse_cells()
Martin Kronbichler [Tue, 29 Jun 2021 07:55:20 +0000 (09:55 +0200)]
Merge pull request #12508 from peterrum/CellWeightPolicy
Introduce RepartitioningPolicyTools::CellWeightPolicy
Peter Munch [Sun, 27 Jun 2021 14:29:49 +0000 (16:29 +0200)]
Introduce RepartitioningPolicyTools::CellWeightPolicy
Martin Kronbichler [Mon, 28 Jun 2021 20:01:27 +0000 (22:01 +0200)]
Merge pull request #12504 from peterrum/CellIDTranslator
Move CellIDTranslator into a new file
Peter Munch [Mon, 28 Jun 2021 18:52:52 +0000 (20:52 +0200)]
Fix serialization of Triangulation
Peter Munch [Sat, 26 Jun 2021 15:30:16 +0000 (17:30 +0200)]
Add Triangulation::n_global_coarse_cells()
David Wells [Mon, 28 Jun 2021 16:22:54 +0000 (12:22 -0400)]
Try one more
David Wells [Fri, 25 Jun 2021 18:36:17 +0000 (14:36 -0400)]
Disable clang-tidy
Martin Kronbichler [Mon, 28 Jun 2021 13:51:38 +0000 (15:51 +0200)]
Merge pull request #12430 from peterrum/make_consistent_in_parallel
Implement AffineConstraints::make_consistent_in_parallel()
David Wells [Mon, 28 Jun 2021 11:56:23 +0000 (07:56 -0400)]
Merge pull request #12492 from peterrum/is_ghost_on_level
Add CellAccessor::is_ghost_on_level()
Timo Heister [Mon, 28 Jun 2021 05:06:38 +0000 (01:06 -0400)]
Merge pull request #12511 from drwells/missing-umfpack-extension
Add one more missing file extension.
David Wells [Mon, 28 Jun 2021 01:17:46 +0000 (21:17 -0400)]
Add one more missing file extension.
Peter Munch [Sat, 26 Jun 2021 17:12:45 +0000 (19:12 +0200)]
Move CellIDTranslator into a new file
Martin Kronbichler [Sun, 27 Jun 2021 06:46:34 +0000 (08:46 +0200)]
Merge pull request #12506 from tjhei/umfpack_cmake_warning
fix umfpack cmake 3.20 warning
Martin Kronbichler [Sun, 27 Jun 2021 06:45:52 +0000 (08:45 +0200)]
Merge pull request #12505 from tjhei/fix_undefined_copy_to_mg
fix missing undefined copy_to_mg
Timo Heister [Sat, 26 Jun 2021 21:33:43 +0000 (17:33 -0400)]
fix umfpack cmake 3.20 warning
Fix the following warnings produced by CMake 3.20:
CMake Warning (dev) at cmake/macros/macro_deal_ii_add_library.cmake:35
(ADD_LIBRARY):
Policy CMP0115 is not set: Source file extensions must be explicit.
File:
/home/heister/deal.ii-
candi/tmp/unpack/deal.II-v9.3.0/bundled/umfpack/UMFPACK/Source/umf_dump.cc
/home/heister/deal.ii-
candi/tmp/unpack/deal.II-v9.3.0/bundled/umfpack/UMFPACK/Source/umf_init_front.cc
/home/heister/deal.ii-
candi/tmp/unpack/deal.II-v9.3.0/bundled/umfpack/UMFPACK/Source/umf_local_search.cc
/home/heister/deal.ii-
candi/tmp/unpack/deal.II-v9.3.0/bundled/umfpack/UMFPACK/Source/umfpack_report_numeric.cc
Timo Heister [Sat, 26 Jun 2021 17:38:26 +0000 (13:38 -0400)]
add missing inst
fixes #12501 and #12490
David Wells [Fri, 25 Jun 2021 15:57:10 +0000 (11:57 -0400)]
Add a move ctor for p::d::Vector.
David Wells [Fri, 25 Jun 2021 20:22:02 +0000 (16:22 -0400)]
Merge pull request #12499 from peterrum/distributed_compute_point_locations_unique_mapping
Make mapping in GridTools::distributed_compute_point_locations() unique
David Wells [Fri, 25 Jun 2021 20:17:56 +0000 (16:17 -0400)]
Merge pull request #12495 from drwells/improve-p-d-T-checks
Improve some checks for distributed Triangulations.
David Wells [Fri, 25 Jun 2021 18:46:09 +0000 (14:46 -0400)]
Merge pull request #12486 from drwells/instantiate-subdomain
Instantiate a GridTools function for dim = 1.
David Wells [Thu, 24 Jun 2021 20:26:02 +0000 (16:26 -0400)]
Improve some checks for distributed Triangulations.
Peter Munch [Fri, 25 Jun 2021 16:17:44 +0000 (18:17 +0200)]
Make mapping in GridTools::distributed_compute_point_locations() unique
David Wells [Tue, 22 Jun 2021 14:41:10 +0000 (10:41 -0400)]
Instantiate a GridTools function for dim = 1.
This requires special-casing p::d::T since the internal functions aren't defined
for 1D.
David Wells [Thu, 24 Jun 2021 12:25:36 +0000 (08:25 -0400)]
Merge pull request #12491 from peterrum/get_face_quadrature_collection
Work on get_face_quadrature_collection() and get_unique_face_quadratures()
Timo Heister [Wed, 23 Jun 2021 21:42:41 +0000 (17:42 -0400)]
Merge pull request #12485 from gassmoeller/clarify_locally_owned_particles
Fix number of locally owned particles in particle handler
Peter Munch [Wed, 23 Jun 2021 21:00:44 +0000 (23:00 +0200)]
Add CellAccessor::is_ghost_on_level()
Rene Gassmoeller [Tue, 22 Jun 2021 14:31:27 +0000 (10:31 -0400)]
Clarify locally owned particles
Peter Munch [Wed, 23 Jun 2021 08:56:19 +0000 (10:56 +0200)]
Work on get_face_quadrature_collection() and get_unique_face_quadratures()
Peter Munch [Wed, 23 Jun 2021 06:08:05 +0000 (08:08 +0200)]
Merge pull request #12489 from drwells/fix-simplex-quadrature-rules
Really use n_points_1D for the simplex quadrature rules.
David Wells [Tue, 22 Jun 2021 18:04:34 +0000 (14:04 -0400)]
Fix several simplex quadrature rules.
Rene Gassmoeller [Fri, 11 Jun 2021 19:52:02 +0000 (15:52 -0400)]
Simplify particle transfer during refinement
David Wells [Tue, 22 Jun 2021 18:00:07 +0000 (14:00 -0400)]
Add a test with poor output.
This test passes on master, but shouldn't, since several of the printed
integrands are wrong. This will be corrected in the next commit.
Marc Fehling [Tue, 22 Jun 2021 17:20:06 +0000 (11:20 -0600)]
Merge pull request #12483 from gassmoeller/fix_remove_particle
Fix bug in remove particle
Matthias Maier [Tue, 22 Jun 2021 16:31:15 +0000 (11:31 -0500)]
Merge pull request #12478 from tjhei/mpi_underlinkage_bug
fix cmake underlinkage error
David Wells [Tue, 22 Jun 2021 16:29:26 +0000 (12:29 -0400)]
Merge pull request #12416 from mathsen/flux_level_constraints
changed make_flux_sparsity_pattern to have the ability to add constraints
David Wells [Tue, 22 Jun 2021 14:48:49 +0000 (10:48 -0400)]
Merge pull request #12469 from bangerth/count
Update/extend the script that counts lines of code.
Rene Gassmoeller [Tue, 22 Jun 2021 14:01:13 +0000 (10:01 -0400)]
Fix copyright year
Bruno Turcksin [Tue, 22 Jun 2021 01:20:26 +0000 (21:20 -0400)]
Merge pull request #12482 from bangerth/arkode-3
Remove code for SUNDIALS versions prior to 3.0.
Daniel Arndt [Mon, 21 Jun 2021 22:22:39 +0000 (18:22 -0400)]
Merge pull request #12480 from peterrum/MinimalGranularityPolicy_fix
Fix MinimalGranularityPolicy
Rene Gassmoeller [Mon, 21 Jun 2021 21:52:48 +0000 (17:52 -0400)]
Fix bug in remove particle
Daniel Arndt [Mon, 21 Jun 2021 18:56:48 +0000 (14:56 -0400)]
Merge pull request #12481 from bangerth/changelog
Add a missing changelog entry.
Wolfgang Bangerth [Tue, 25 May 2021 19:31:15 +0000 (13:31 -0600)]
Remove code for SUNDIALS versions prior to 3.0.
Wolfgang Bangerth [Mon, 21 Jun 2021 17:38:12 +0000 (11:38 -0600)]
Add a missing changelog entry.
Peter Munch [Mon, 21 Jun 2021 14:37:23 +0000 (16:37 +0200)]
Fix MinimalGranularityPolicy
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