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https://gitweb.dealii.org/ - dealii-svn.git/log
heister [Sat, 7 Dec 2013 20:55:04 +0000 (20:55 +0000)]
tutorial page fixes
git-svn-id: https://svn.dealii.org/trunk@31921
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heister [Sat, 7 Dec 2013 20:53:38 +0000 (20:53 +0000)]
add publications
git-svn-id: https://svn.dealii.org/trunk@31920
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maier [Sat, 7 Dec 2013 19:36:22 +0000 (19:36 +0000)]
Testsuite: Bugfix: Use the correct mpirun executable as found by FindMPI.cmake
git-svn-id: https://svn.dealii.org/trunk@31919
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bangerth [Sat, 7 Dec 2013 17:39:54 +0000 (17:39 +0000)]
Convert a couple of places where we intended 'unsigned int' but now had 'size_type'.
git-svn-id: https://svn.dealii.org/trunk@31918
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bangerth [Sat, 7 Dec 2013 16:30:01 +0000 (16:30 +0000)]
A couple of fixes to make things compile again in 64-bit mode after the change to full_matrix.h a couple of days ago.
git-svn-id: https://svn.dealii.org/trunk@31917
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maier [Sat, 7 Dec 2013 03:02:14 +0000 (03:02 +0000)]
CMake: Several bugfixes in FindTRILINOS.cmake
- Use again the FIND_PACKAGE mechanism that has the right search order for
project configurations
- Print error condition in configure phase so that one has a clue what is
going wrong...
git-svn-id: https://svn.dealii.org/trunk@31916
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maier [Fri, 6 Dec 2013 18:15:52 +0000 (18:15 +0000)]
Testsuite: Provide alternative output for q_dg0_projection_01 with icc
git-svn-id: https://svn.dealii.org/trunk@31914
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maier [Fri, 6 Dec 2013 16:52:31 +0000 (16:52 +0000)]
Testsuite: Provide alternative output for icc
The tests in question test whether it is possible to find a vertex lying
exactly on an edge or line, respectively. Unfortunately this is not stable
under more aggressive optimization.
git-svn-id: https://svn.dealii.org/trunk@31913
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maier [Fri, 6 Dec 2013 16:11:49 +0000 (16:11 +0000)]
Revert "Testsuite: Reenable compiler version injection on non Linux platforms"
git-svn-id: https://svn.dealii.org/trunk@31912
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kanschat [Fri, 6 Dec 2013 15:29:19 +0000 (15:29 +0000)]
revert last commit
git-svn-id: https://svn.dealii.org/trunk@31911
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maier [Fri, 6 Dec 2013 14:04:44 +0000 (14:04 +0000)]
Remove 'official' Windows support from the readme.
git-svn-id: https://svn.dealii.org/trunk@31910
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maier [Fri, 6 Dec 2013 13:58:10 +0000 (13:58 +0000)]
Testsuite: Reenable compiler version injection on non Linux platforms
git-svn-id: https://svn.dealii.org/trunk@31909
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maier [Fri, 6 Dec 2013 13:37:03 +0000 (13:37 +0000)]
Documentation: Update some documentation
git-svn-id: https://svn.dealii.org/trunk@31908
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kronbichler [Fri, 6 Dec 2013 09:14:28 +0000 (09:14 +0000)]
Fix latex formula
git-svn-id: https://svn.dealii.org/trunk@31907
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bangerth [Fri, 6 Dec 2013 04:12:23 +0000 (04:12 +0000)]
Add a couple of previously missing specializations.
git-svn-id: https://svn.dealii.org/trunk@31906
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bangerth [Fri, 6 Dec 2013 04:10:38 +0000 (04:10 +0000)]
In the conversion to 64-bit indices, a lot of classes acquired a local typedef 'size_type'. In some cases, it was aliased to types::global_dof_index, but this may have been a mistake. One such example is FullMatrix, which definitely doesn't need 64-bit indices. Revert this and go back to 'unsigned int' for the local size_type type.
git-svn-id: https://svn.dealii.org/trunk@31905
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maier [Fri, 6 Dec 2013 01:34:01 +0000 (01:34 +0000)]
Documentation: Some more cleanup
git-svn-id: https://svn.dealii.org/trunk@31904
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maier [Fri, 6 Dec 2013 01:13:08 +0000 (01:13 +0000)]
Documentation: Cleanup, and remove obsolete dot invocation
git-svn-id: https://svn.dealii.org/trunk@31903
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daniel.arndt [Thu, 5 Dec 2013 12:30:16 +0000 (12:30 +0000)]
Adjust the tests using collect_periodic_faces to the new signature in r31900
git-svn-id: https://svn.dealii.org/trunk@31901
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daniel.arndt [Thu, 5 Dec 2013 12:20:32 +0000 (12:20 +0000)]
Changed the signature of collect_periodic_faces to return the result via a reference and not as return value
git-svn-id: https://svn.dealii.org/trunk@31900
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kanschat [Thu, 5 Dec 2013 11:41:25 +0000 (11:41 +0000)]
fix tangentil jump
git-svn-id: https://svn.dealii.org/trunk@31899
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kronbichler [Thu, 5 Dec 2013 11:35:19 +0000 (11:35 +0000)]
Cleanup append_index call. Do not make the scratch data a member of ConstraintMatrix but make it a static variable that lives for the whole program. This simplifies the calls singificantly.
git-svn-id: https://svn.dealii.org/trunk@31898
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kronbichler [Thu, 5 Dec 2013 10:45:13 +0000 (10:45 +0000)]
Avoid cycles in constraint.
git-svn-id: https://svn.dealii.org/trunk@31897
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kronbichler [Thu, 5 Dec 2013 10:24:08 +0000 (10:24 +0000)]
Forgot to update test output.
git-svn-id: https://svn.dealii.org/trunk@31896
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kronbichler [Thu, 5 Dec 2013 10:21:17 +0000 (10:21 +0000)]
Better test output to avoid log(0).
git-svn-id: https://svn.dealii.org/trunk@31895
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kanschat [Thu, 5 Dec 2013 09:15:29 +0000 (09:15 +0000)]
simplify code
git-svn-id: https://svn.dealii.org/trunk@31894
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heister [Thu, 5 Dec 2013 03:00:41 +0000 (03:00 +0000)]
fix typo
git-svn-id: https://svn.dealii.org/trunk@31893
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heister [Thu, 5 Dec 2013 02:13:37 +0000 (02:13 +0000)]
fix test output
git-svn-id: https://svn.dealii.org/trunk@31892
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maier [Thu, 5 Dec 2013 00:34:40 +0000 (00:34 +0000)]
Bugfix: Fix typo introduced in 31887
git-svn-id: https://svn.dealii.org/trunk@31891
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heister [Wed, 4 Dec 2013 21:03:24 +0000 (21:03 +0000)]
improve documentation
git-svn-id: https://svn.dealii.org/trunk@31887
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kronbichler [Wed, 4 Dec 2013 20:31:28 +0000 (20:31 +0000)]
Avoid using C++11
git-svn-id: https://svn.dealii.org/trunk@31886
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maier [Wed, 4 Dec 2013 18:14:21 +0000 (18:14 +0000)]
Testsuite: The testsuite needs at least cmake version 2.8.9. Clean up some comments
git-svn-id: https://svn.dealii.org/trunk@31885
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maier [Wed, 4 Dec 2013 18:02:47 +0000 (18:02 +0000)]
Bugfix: Export mesh_converter again in the project configuration. The testsuite needs it.
git-svn-id: https://svn.dealii.org/trunk@31884
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kronbichler [Wed, 4 Dec 2013 17:41:33 +0000 (17:41 +0000)]
Test one more aspect: resolving large chains of constraints
git-svn-id: https://svn.dealii.org/trunk@31883
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kronbichler [Wed, 4 Dec 2013 17:21:32 +0000 (17:21 +0000)]
Two more test cases. Use common naming scheme for parallel assembly tests
git-svn-id: https://svn.dealii.org/trunk@31882
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heister [Wed, 4 Dec 2013 16:41:42 +0000 (16:41 +0000)]
run gla tests only if we have petsc and trilinos
git-svn-id: https://svn.dealii.org/trunk@31880
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heister [Wed, 4 Dec 2013 16:02:43 +0000 (16:02 +0000)]
scale random entries in test to make tolerance check work. This should fix the test on intel.
git-svn-id: https://svn.dealii.org/trunk@31878
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kronbichler [Wed, 4 Dec 2013 15:47:16 +0000 (15:47 +0000)]
Output error instead of throwing an assertion in order to see the output when it is wrong. Desired output is -inf.
git-svn-id: https://svn.dealii.org/trunk@31877
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bangerth [Wed, 4 Dec 2013 14:38:16 +0000 (14:38 +0000)]
Instantiate several functions in GridTools for parallel::distributed::Triangulation.
git-svn-id: https://svn.dealii.org/trunk@31876
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kronbichler [Wed, 4 Dec 2013 12:37:13 +0000 (12:37 +0000)]
Copy data inside the vector
git-svn-id: https://svn.dealii.org/trunk@31875
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kronbichler [Wed, 4 Dec 2013 12:05:50 +0000 (12:05 +0000)]
Update tooltip
git-svn-id: https://svn.dealii.org/trunk@31874
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maier [Wed, 4 Dec 2013 12:02:48 +0000 (12:02 +0000)]
Documentation: Prettify tutorial pages
git-svn-id: https://svn.dealii.org/trunk@31873
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kronbichler [Wed, 4 Dec 2013 12:02:09 +0000 (12:02 +0000)]
Remove debug output
git-svn-id: https://svn.dealii.org/trunk@31872
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kronbichler [Wed, 4 Dec 2013 11:53:34 +0000 (11:53 +0000)]
Fix a few issues when re-using ScratchData.
git-svn-id: https://svn.dealii.org/trunk@31871
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maier [Wed, 4 Dec 2013 11:12:46 +0000 (11:12 +0000)]
Documentation: Provide tutorial page within doxygen, cleanup
TODO:
* Reformat the page
* Automatically generate the list and the group
git-svn-id: https://svn.dealii.org/trunk@31870
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kronbichler [Wed, 4 Dec 2013 06:57:07 +0000 (06:57 +0000)]
Fix segmentation fault. Still need to fix wrong resolution of constraints in distribute_local_to_global
git-svn-id: https://svn.dealii.org/trunk@31869
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heister [Wed, 4 Dec 2013 05:30:53 +0000 (05:30 +0000)]
improve comments for periodicity stuff
git-svn-id: https://svn.dealii.org/trunk@31868
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kronbichler [Tue, 3 Dec 2013 21:15:05 +0000 (21:15 +0000)]
Use std::vector instead of manually allocating memory
git-svn-id: https://svn.dealii.org/trunk@31863
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maier [Tue, 3 Dec 2013 18:29:16 +0000 (18:29 +0000)]
Documentation: Fix typos
git-svn-id: https://svn.dealii.org/trunk@31862
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maier [Tue, 3 Dec 2013 17:45:43 +0000 (17:45 +0000)]
Final cleanup of the build system for the release.
git-svn-id: https://svn.dealii.org/trunk@31861
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maier [Tue, 3 Dec 2013 17:03:41 +0000 (17:03 +0000)]
CMake: Bugfix, only run the install stage for the convenience targets if
CMAKE_INSTALL_PREFIX is actually set to something different than /usr/local
The rationale behind this is that in case that CMAKE_INSTALL_PREFIX is not
altered, a user most likely just wants to compile parts of the library
(without installation).
git-svn-id: https://svn.dealii.org/trunk@31860
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kronbichler [Tue, 3 Dec 2013 16:44:33 +0000 (16:44 +0000)]
Mention change
git-svn-id: https://svn.dealii.org/trunk@31859
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maier [Tue, 3 Dec 2013 16:31:14 +0000 (16:31 +0000)]
Add an news item
git-svn-id: https://svn.dealii.org/trunk@31858
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maier [Tue, 3 Dec 2013 16:27:33 +0000 (16:27 +0000)]
Documentation: Bugfix: Avoid a name clash for configured doxygen scripts
git-svn-id: https://svn.dealii.org/trunk@31857
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maier [Tue, 3 Dec 2013 15:49:34 +0000 (15:49 +0000)]
Cleanup: Remove report_features and the old build test facility
git-svn-id: https://svn.dealii.org/trunk@31856
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maier [Tue, 3 Dec 2013 14:27:48 +0000 (14:27 +0000)]
Cmake: Fix a quoting error; silence a warning with cmake-2.8.12
git-svn-id: https://svn.dealii.org/trunk@31854
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bangerth [Tue, 3 Dec 2013 13:59:47 +0000 (13:59 +0000)]
Include a suggestion by Denis Davydov.
git-svn-id: https://svn.dealii.org/trunk@31853
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bangerth [Tue, 3 Dec 2013 13:54:24 +0000 (13:54 +0000)]
Add a few comments as suggested by Denis Davydov.
git-svn-id: https://svn.dealii.org/trunk@31852
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kronbichler [Tue, 3 Dec 2013 13:36:22 +0000 (13:36 +0000)]
Add scratch data field in constraint matrix to avoid frequent re-allocation that can affect parallel performance (memory allocation is not scalable). It is made thread-local and we need to make sure that no function used inside distribute_local_to_global spawns tasks by itself. There is a bool state variable to provide some security against race conditions, even though it is subject to race conditions, too.
git-svn-id: https://svn.dealii.org/trunk@31851
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maier [Tue, 3 Dec 2013 13:24:34 +0000 (13:24 +0000)]
CMake: Also respect DEAL_II_CXX_FLAGS
Although this is an invalid naming (it just read CMAKE_CXX_FLAGS) it is
just way too easy to accidentally use it...
git-svn-id: https://svn.dealii.org/trunk@31850
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maier [Tue, 3 Dec 2013 12:38:09 +0000 (12:38 +0000)]
CMake: Improve $ (make|ninja) (help|info) considerably, do not define a
"help" target when the ninja generator is used
git-svn-id: https://svn.dealii.org/trunk@31849
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kronbichler [Tue, 3 Dec 2013 08:12:07 +0000 (08:12 +0000)]
Re-fill comments to make them more compact.
git-svn-id: https://svn.dealii.org/trunk@31848
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bangerth [Tue, 3 Dec 2013 04:36:55 +0000 (04:36 +0000)]
Fix typo in Guido's name.
git-svn-id: https://svn.dealii.org/trunk@31847
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wick [Tue, 3 Dec 2013 04:31:59 +0000 (04:31 +0000)]
publications update
git-svn-id: https://svn.dealii.org/trunk@31846
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wick [Tue, 3 Dec 2013 04:12:38 +0000 (04:12 +0000)]
publications update
git-svn-id: https://svn.dealii.org/trunk@31845
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maier [Mon, 2 Dec 2013 10:42:48 +0000 (10:42 +0000)]
Try to fix the timing issues in base/timer_02
git-svn-id: https://svn.dealii.org/trunk@31843
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kronbichler [Sun, 1 Dec 2013 20:04:03 +0000 (20:04 +0000)]
Add a comment
git-svn-id: https://svn.dealii.org/trunk@31842
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heister [Sun, 1 Dec 2013 19:47:50 +0000 (19:47 +0000)]
fix latex errors
git-svn-id: https://svn.dealii.org/trunk@31841
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bangerth [Sun, 1 Dec 2013 18:20:50 +0000 (18:20 +0000)]
Significantly improve the error message one gets when you ask for something from an FEValues object for which the corresponding flag was not specified.
git-svn-id: https://svn.dealii.org/trunk@31840
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maier [Sun, 1 Dec 2013 18:17:50 +0000 (18:17 +0000)]
Increase stopping limit for gmres_reorthogonalize
git-svn-id: https://svn.dealii.org/trunk@31839
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bangerth [Sun, 1 Dec 2013 17:29:14 +0000 (17:29 +0000)]
Avoid a memory allocation if possible, by re-using previously used memory.
git-svn-id: https://svn.dealii.org/trunk@31838
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maier [Sun, 1 Dec 2013 10:40:34 +0000 (10:40 +0000)]
Fix output for intel
git-svn-id: https://svn.dealii.org/trunk@31837
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maier [Sat, 30 Nov 2013 14:52:51 +0000 (14:52 +0000)]
Testsuite: Add alternative comparison output for Intel in optimised mode
git-svn-id: https://svn.dealii.org/trunk@31836
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maier [Sat, 30 Nov 2013 14:15:19 +0000 (14:15 +0000)]
Testsuite: Provide different comparison files for the renumbering tests
git-svn-id: https://svn.dealii.org/trunk@31835
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maier [Sat, 30 Nov 2013 14:03:23 +0000 (14:03 +0000)]
Testsuite: Add a possiblity to specify compiler and compiler version restrictions
git-svn-id: https://svn.dealii.org/trunk@31834
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maier [Sat, 30 Nov 2013 13:26:42 +0000 (13:26 +0000)]
Testsuite: Remove test override location mechanism.
git-svn-id: https://svn.dealii.org/trunk@31833
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kronbichler [Fri, 29 Nov 2013 16:01:49 +0000 (16:01 +0000)]
Disable even-odd decomposition for element degree 1 because it is slower than the old implemnetation
git-svn-id: https://svn.dealii.org/trunk@31832
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maier [Fri, 29 Nov 2013 13:59:14 +0000 (13:59 +0000)]
Fix some more failing tests due to rounding with ICC
git-svn-id: https://svn.dealii.org/trunk@31830
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maier [Fri, 29 Nov 2013 12:27:53 +0000 (12:27 +0000)]
Documentation: Some more cleanup
git-svn-id: https://svn.dealii.org/trunk@31829
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maier [Fri, 29 Nov 2013 11:45:06 +0000 (11:45 +0000)]
Doc: Change target description.
git-svn-id: https://svn.dealii.org/trunk@31828
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maier [Thu, 28 Nov 2013 23:35:00 +0000 (23:35 +0000)]
Some last documentation fixes
git-svn-id: https://svn.dealii.org/trunk@31827
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maier [Thu, 28 Nov 2013 23:23:26 +0000 (23:23 +0000)]
Fix typo
git-svn-id: https://svn.dealii.org/trunk@31826
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maier [Thu, 28 Nov 2013 23:07:17 +0000 (23:07 +0000)]
Documentation: Reformat <pre> environment, unify and cleanup documentation
git-svn-id: https://svn.dealii.org/trunk@31825
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maier [Thu, 28 Nov 2013 21:55:35 +0000 (21:55 +0000)]
Documentation: Bugfix
git-svn-id: https://svn.dealii.org/trunk@31824
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maier [Thu, 28 Nov 2013 20:35:16 +0000 (20:35 +0000)]
"Fix" a compilation issue with clang-3.4 and bundled fparser
Putting includes in front of the fpoptimizer.cc blob helps. It's magic.
git-svn-id: https://svn.dealii.org/trunk@31823
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heister [Thu, 28 Nov 2013 14:27:13 +0000 (14:27 +0000)]
add missing instantiations of find_active_cell_around_point
git-svn-id: https://svn.dealii.org/trunk@31821
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maier [Thu, 28 Nov 2013 14:26:28 +0000 (14:26 +0000)]
And change the number of printed digits for four more tests
git-svn-id: https://svn.dealii.org/trunk@31820
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maier [Thu, 28 Nov 2013 14:09:44 +0000 (14:09 +0000)]
And another one
git-svn-id: https://svn.dealii.org/trunk@31819
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maier [Thu, 28 Nov 2013 13:58:13 +0000 (13:58 +0000)]
and another test
git-svn-id: https://svn.dealii.org/trunk@31818
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maier [Thu, 28 Nov 2013 13:54:36 +0000 (13:54 +0000)]
Increase number of printed digits for a test
git-svn-id: https://svn.dealii.org/trunk@31817
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maier [Thu, 28 Nov 2013 13:54:34 +0000 (13:54 +0000)]
Fix a test for icc: Stop for polynomial degree 4 as soon as EPS is reached.
git-svn-id: https://svn.dealii.org/trunk@31816
0785d39b -7218-0410-832d-
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maier [Thu, 28 Nov 2013 13:54:24 +0000 (13:54 +0000)]
Increase output accuracy of a test so that it succesfully runs with icc
git-svn-id: https://svn.dealii.org/trunk@31815
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bangerth [Wed, 27 Nov 2013 17:19:41 +0000 (17:19 +0000)]
Reset a copy object before writing into it.
git-svn-id: https://svn.dealii.org/trunk@31814
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bangerth [Wed, 27 Nov 2013 16:49:19 +0000 (16:49 +0000)]
Clean up code a bit.
git-svn-id: https://svn.dealii.org/trunk@31813
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bangerth [Wed, 27 Nov 2013 15:18:25 +0000 (15:18 +0000)]
Mark an input argument as const.
git-svn-id: https://svn.dealii.org/trunk@31812
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bangerth [Wed, 27 Nov 2013 15:17:29 +0000 (15:17 +0000)]
Work around the Intel ICC bug that leads to forgotten template instantiations.
git-svn-id: https://svn.dealii.org/trunk@31811
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kanschat [Wed, 27 Nov 2013 14:04:50 +0000 (14:04 +0000)]
automatically generate version info
git-svn-id: https://svn.dealii.org/trunk@31810
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heister [Tue, 26 Nov 2013 16:43:06 +0000 (16:43 +0000)]
next try to remove compilation warning in tensor_base.h
git-svn-id: https://svn.dealii.org/trunk@31808
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heister [Tue, 26 Nov 2013 16:14:49 +0000 (16:14 +0000)]
fix typo
git-svn-id: https://svn.dealii.org/trunk@31807
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heister [Tue, 26 Nov 2013 14:31:08 +0000 (14:31 +0000)]
fix cone tests
git-svn-id: https://svn.dealii.org/trunk@31806
0785d39b -7218-0410-832d-
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