Merge pull request #13795 from drwells/add-mpi-bool-instantiation

Add some missing MPI boolean instantiations.

Merge pull request #13642 from NiklasWik/piola_matrix_free

Matrix-free Piola transformation for affine cells

Add some missing MPI boolean instantiations.

Merge pull request #13789 from gfcas/reinit-argument

Clearify LA::d::BlockVector::reinit input argument

Merge pull request #13611 from tjhei/add_big_mpi_compat

embed BigMPICompat library

Merge pull request #13780 from dealii/dependabot/github_actions/docker/build-push-action-3

Bump docker/build-push-action from 2 to 3

Merge pull request #13781 from dealii/dependabot/github_actions/actions/upload-artifact-3

Bump actions/upload-artifact from 1 to 3

Avoid copy paste

Fix documentation

Merge pull request #13777 from dealii/dependabot/github_actions/docker/login-action-2

Bump docker/login-action from 1 to 2

Merge pull request #13778 from dealii/dependabot/github_actions/docker/setup-buildx-action-2

Bump docker/setup-buildx-action from 1 to 2

Merge pull request #13779 from dealii/dependabot/github_actions/actions/cache-3

Bump actions/cache from 2 to 3

Merge pull request #13783 from tamiko/fix_oneapi

TBB oneAPI: make global_control object static

Clearify LA::d::BlockVector::reinit input argument

Bump docker/build-push-action from 2 to 3

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 2 to 3.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](https://github.com/docker/build-push-action/compare/v2...v3)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Bump actions/upload-artifact from 1 to 3

Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 1 to 3.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](https://github.com/actions/upload-artifact/compare/v1...v3)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Bump actions/cache from 2 to 3

Bumps [actions/cache](https://github.com/actions/cache) from 2 to 3.
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](https://github.com/actions/cache/compare/v2...v3)

---
updated-dependencies:
- dependency-name: actions/cache
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Bump docker/login-action from 1 to 2

Bumps [docker/login-action](https://github.com/docker/login-action) from 1 to 2.
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](https://github.com/docker/login-action/compare/v1...v2)

---
updated-dependencies:
- dependency-name: docker/login-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Bump docker/setup-buildx-action from 1 to 2

Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 1 to 2.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](https://github.com/docker/setup-buildx-action/compare/v1...v2)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Merge pull request #13785 from drwells/ignore-dependabot-name

Add an exception for commits from dependabot.

Merge pull request #13776 from bangerth/copyright-2

Give a shell script a proper suffix.

Add an exception for commits from dependabot.

add a test

TBB oneAPI: make global_control object static

tbb::global_control is a class that affects the specified behavior of
tbb during its lifetime. Thus, in order to set a global thread limit for
tbb we have to maintain the object throughout the execution of the
program. We do this by maintaining a static std::unique_ptr.

A std::unique_ptr is a good choice here because tbb::global_control does
not provide a mechanism to override its setting - we can only delete the
old and replace it with a new one.

Merge pull request #13774 from marcfehling/dependabot

Added dependabot for github-actions.

Merge pull request #13775 from bangerth/copyright

Update copyright years.

Merge pull request #13721 from tjhei/step-40-no-limit-io

step-40: update IO section

Give a shell script a proper suffix.

Update copyright years.

Merge pull request #13765 from drwells/signed-tet-volume

Remove std::abs() from the tet volume calculation.

Merge pull request #13766 from drwells/mixed-mesh-volume

Implement pyramid volume and fix wedge volume.

Added dependabot for github-actions.

Merge pull request #13770 from gfcas/vector_tools_rhs

Minor code updates to create_right_hand_side

Implement pyramid volume and fix wedge volume.

Remove std::abs() from the tet volume calculation.

Minor code updates to create_right_hand_side

Merge pull request #13772 from tamiko/doxygen_fixes

Doxygen: Ensure that opening and closing glossary quotes are on the same line

Doxygen: Ensure that opening and closing glossary quotes are on the same line

Merge pull request #13754 from luca-heltai/cgal-dealii-tria-to-CGAL-surface-mesh

Convert a deal.II tria to a CGAL::Surface_mesh

Merge pull request #13763 from kronbichler/fix_compile_error

Fix compile error of test on certain compilers

Fix compile error of test on certain compilers

Merge pull request #13759 from tamiko/fix_cgal_configure

CMake: Do not configure CGAL with bundled boost

Merge pull request #13751 from marcfehling/fixtest-bfgs

Check for range of function calls in bfgs tests.

Merge pull request #13762 from bangerth/once_flag

Use std::call_once() instead of hand-rolling a solution.

Merge pull request #13761 from bangerth/indent-cmake

Properly indent a cmake command.

Properly indent a cmake command.

Use std::call_once() instead of hand-rolling a solution.

Merge pull request #13760 from kronbichler/test_robustness2

Check for range of function calls in bfgs tests.

Remove number of function calls from bfgs tests.

Make sure to reach numbers small enough to be below numdiff threshold

Improve robustness of two tests

Merge pull request #13745 from drwells/muparser-tls

Avoid doing extra TLS lookups in FunctionParser.

Merge pull request #13757 from tamiko/silence_cmake_warning

Merge pull request #13758 from drwells/add-boost-definition-note

Add a comment explaining BOOST_DEFINITIONS

CMake: Avoid a CMake policy warning

CMake: Do not configure CGAL with bundled boost

Add a comment describing our boost definitions.

Merge pull request #12664 from drwells/unghost-matrix-diagonals

Unghost matrix diagonals

Don't set ghost values in diagonal matrices.

We never read them.

Merge pull request #13741 from drwells/more-sundials-6

Fix sundials 6 tests, part 1

Merge pull request #13735 from luca-heltai/cgal-support-c3t3

CGAL C3T3 to deal.II Triangulation.

Merge pull request #13752 from marcfehling/fixtest-consensus

Fix compute_index_owner_01.

Merge pull request #13755 from kronbichler/test_robustness

Make multigrid test more robust

Fix compute_index_owner_01.

Merge pull request #13756 from kronbichler/add_instantiation

MatrixFree: Add instantiation for ConstraintValues::insert_entries

Fix clockwise_ordering

Convert a deal.II tria to a CGAL::Surface_mesh

MatrixFree: Add instantiation for ConstraintValues::insert_entries

Also apply robust setup to other test

Make multigrid test more robust

Merge pull request #13750 from marcfehling/fixtest-petsc

Update petsc test output.

Update petsc test output.

Code review.

CGAL C3T3 to deal.II Triangulation.

Clean up the declaration of make_nvector_view().

Use SUNContext as needed in SUNDIALS tests, part 1.

This new context object is mostly for logging (i.e., its API is for profiling
and logging only at the moment) so we just need to make sure it exists.

Avoid doing extra TLS lookups in FunctionParser.

While we are at it, get rid of the calls to begin_raw() and end_raw() (they are
deprecated).

Merge pull request #13748 from simonsticko/assert_mapping_cartesian

Assert that the incoming cell is Cartesian in MappingCartesian

Merge pull request #13749 from simonsticko/rename_ExcReclassifyNotCalled

Rename an exception

Merge pull request #13747 from tamiko/fix_step_75_emplace

Step-75: use well-formed deleter

Assert that the incoming cell is Cartesian in MappingCartesian

Rename an exception

To be consistent with the names of the other exceptions.

Step-75: use well-formed deleter

LLVM/Clang's libc++ library version 13/14 got stricter by checking
requirements of the deleter, in particular, according to [1] a deleter
must pass the requirement `__shared_ptr_deleter_ctor_reqs` which is
defined as follows:
```
template <class _Dp, class _Pt, class = decltype(declval<_Dp>()(declval<_Pt>()))>
static true_type __well_formed_deleter_test(int);

template <class, class>
static false_type __well_formed_deleter_test(...);

template <class _Dp, class _Pt>
struct __well_formed_deleter : decltype(__well_formed_deleter_test<_Dp, _Pt>(0)) {};

template<class _Dp, class _Tp, class _Yp>
struct __shared_ptr_deleter_ctor_reqs
{
    static const bool value = __compatible_with<_Tp, _Yp>::value &&
                              is_move_constructible<_Dp>::value &&
                              __well_formed_deleter<_Dp, _Tp*>::value;
};
```
Unfortunately, our construct
```
coarse_grid_triangulations.emplace_back(
  const_cast<Triangulation<dim> *>(&(dof_handler.get_triangulation())),
  [](auto &) {});
```
does not pass this test. The issue is that the deleter takes a pointer,
not a reference which, so the lambda `[](auto &){}` does not pass above
`__shared_ptr_deleter_ctor_reqs`.

While at it, remove the const cast: `coarse_grid_triangulations` is
declared as a vector holding a `shared_ptr<const Triangulation<dim>>`,
thus we should simply take the address and not convert to a non-const
object.

[1] https://github.com/llvm/llvm-project/blob/main/libcxx/include/__memory/shared_ptr.h

Merge pull request #13744 from tamiko/transfinite_fix_codim_one

TransfiniteInterpolationManifold: fix codimension one case

Merge pull request #13746 from tamiko/fix_typo

base/tensor.h: Fix a typo

base/tensor.h: Fix a typo

TransfiniteInterpolationManifold: add a test

Merge pull request #13742 from bangerth/typo

TransfiniteInterpolationManifold: fix codimension one case

The codimension one case currently fails with an assertion:
```
An error occurred in line <290> of file <source/grid/grid_tools.cc> in function
    std::pair<DerivativeForm<1, dim, spacedim>, Tensor<1, spacedim>> dealii::GridTools::affine_cell_approximation(const ArrayView<const Point<spacedim>> &) [dim = 2, spacedim = 3]
The violated condition was:
    ::dealii::deal_II_exceptions::internals::compare_for_equality(vertices.size(), GeometryInfo<dim>::vertices_per_cell)
Additional information:
    Dimension 9 not equal to 4.
```
This is triggered because we take a compatibility branch in case of
`dim < spacedim` (in `include/deal.II/fe/mapping_q_internal.h`):
```
908         if (real_support_points.size() ==
909               GeometryInfo<dim>::vertices_per_cell ||
910             dim < spacedim)
911           {
```
but still initialize the vector `unit_points` by a subdivided quadrature
(which is needed for the default quadratic approximation; in
`source/grid/manifold_lib.cc`):
```
1686   std::vector<Point<dim>> unit_points =
1687     QIterated<dim>(QTrapez<1>(), 2).get_points();
1688   std::vector<Point<spacedim>> real_points(unit_points.size());
```

Fix this by simply initializing `unit_points` with the right number of
interpolation points for the `dim < spacedim` variant.

Fix a typo.

Merge pull request #13730 from kronbichler/add_test_output_variant

Add another variant for multigrid test

Merge pull request #13717 from luca-heltai/cgal-compute_boolean_operation

Corefine and compute boolean operations in CGAL

Merge pull request #13739 from marcfehling/fixtest_sharedtria_refine

Added missing headers to failing test.

Convert "not less than" to "greater than or equal to".

The later is much simpler.

Added missing headers to failing test.

Fixed documenation.

Merge pull request #13737 from peterrum/ldv_fix_size

LA:d:V: fix size in the case of shared memory

Merge pull request #13738 from gfcas/typo

Fix typo w_cycle

address comments

Merge pull request #13736 from drwells/gcc-12-warnings

Fix some GCC-12 warnings.