Convert some unsigned ints to types::global_dof_index.

git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_3@25872 0785d39b-7218-0410-832d-ea1e28bc413d

convert some unsigned ints to types::global_dof_index

git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_3@25871 0785d39b-7218-0410-832d-ea1e28bc413d

Change unsigned int to types::global_dof_index.

git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_3@25870 0785d39b-7218-0410-832d-ea1e28bc413d

Commit to FEValues

git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_3@25869 0785d39b-7218-0410-832d-ea1e28bc413d

Add.

git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_3@25868 0785d39b-7218-0410-832d-ea1e28bc413d

Convert unsigned int to global_dof_index

git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_3@25867 0785d39b-7218-0410-832d-ea1e28bc413d

Change unsigned int to types::global_dof_index.

git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_3@25858 0785d39b-7218-0410-832d-ea1e28bc413d

types::global_dof_index

git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_3@25855 0785d39b-7218-0410-832d-ea1e28bc413d

Merge from the branch on which this branch rests.

git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_3@25846 0785d39b-7218-0410-832d-ea1e28bc413d

Add missing piece.

git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_3@25845 0785d39b-7218-0410-832d-ea1e28bc413d

Apply a few patches rescued from a previous branch. This probably only covers a small fraction of the places that need to be converted, but better than nothing.

git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_3@25842 0785d39b-7218-0410-832d-ea1e28bc413d

Create a new branch that is intended to be used for upgrading from simple 'unsigned int' to 'types::global_dof_index' where necessary. Compared to the _2 branch (that will go away again in a second) this one is based on a different branch that has a few things we want don't want to stomp onto.

git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_3@25837 0785d39b-7218-0410-832d-ea1e28bc413d

Merge from mainline.

git-svn-id: https://svn.dealii.org/branches/branch_merge_mg_into_dof_handler@25836 0785d39b-7218-0410-832d-ea1e28bc413d

improve intro

git-svn-id: https://svn.dealii.org/trunk@25835 0785d39b-7218-0410-832d-ea1e28bc413d

doc

git-svn-id: https://svn.dealii.org/trunk@25834 0785d39b-7218-0410-832d-ea1e28bc413d

more tests

git-svn-id: https://svn.dealii.org/trunk@25833 0785d39b-7218-0410-832d-ea1e28bc413d

Add residuals

git-svn-id: https://svn.dealii.org/trunk@25832 0785d39b-7218-0410-832d-ea1e28bc413d

use new include files matrix_tools.h and vector_tools.h

git-svn-id: https://svn.dealii.org/trunk@25831 0785d39b-7218-0410-832d-ea1e28bc413d

Fix input file

git-svn-id: https://svn.dealii.org/trunk@25825 0785d39b-7218-0410-832d-ea1e28bc413d

Fix input file

git-svn-id: https://svn.dealii.org/trunk@25824 0785d39b-7218-0410-832d-ea1e28bc413d

Fix input files

git-svn-id: https://svn.dealii.org/trunk@25823 0785d39b-7218-0410-832d-ea1e28bc413d

Fix input file

git-svn-id: https://svn.dealii.org/trunk@25822 0785d39b-7218-0410-832d-ea1e28bc413d

also rename matrices.* to matrix_tools.*

git-svn-id: https://svn.dealii.org/trunk@25821 0785d39b-7218-0410-832d-ea1e28bc413d

decribtion of the active set method

git-svn-id: https://svn.dealii.org/trunk@25820 0785d39b-7218-0410-832d-ea1e28bc413d

keywords

git-svn-id: https://svn.dealii.org/trunk@25818 0785d39b-7218-0410-832d-ea1e28bc413d

first version of diergence tests

git-svn-id: https://svn.dealii.org/trunk@25810 0785d39b-7218-0410-832d-ea1e28bc413d

additional error check in Trilinos SparseMatrix in debug mode

git-svn-id: https://svn.dealii.org/trunk@25809 0785d39b-7218-0410-832d-ea1e28bc413d

typo in comment

git-svn-id: https://svn.dealii.org/trunk@25808 0785d39b-7218-0410-832d-ea1e28bc413d

Thomas Carraro's publications.

git-svn-id: https://svn.dealii.org/trunk@25807 0785d39b-7218-0410-832d-ea1e28bc413d

rename vectors to vector_tools

git-svn-id: https://svn.dealii.org/trunk@25806 0785d39b-7218-0410-832d-ea1e28bc413d

Fix markup problem.

git-svn-id: https://svn.dealii.org/trunk@25805 0785d39b-7218-0410-832d-ea1e28bc413d

move mpi namespace from trilinos_block_vector.h into new trilinos_parallel_block_vector.h

git-svn-id: https://svn.dealii.org/trunk@25802 0785d39b-7218-0410-832d-ea1e28bc413d

Fix typo.

git-svn-id: https://svn.dealii.org/trunk@25793 0785d39b-7218-0410-832d-ea1e28bc413d

Fix a typo.

git-svn-id: https://svn.dealii.org/trunk@25792 0785d39b-7218-0410-832d-ea1e28bc413d

Prefix test results for this branch.

git-svn-id: https://svn.dealii.org/branches/branch_merge_mg_into_dof_handler@25791 0785d39b-7218-0410-832d-ea1e28bc413d

Add merge.

git-svn-id: https://svn.dealii.org/branches/branch_merge_mg_into_dof_handler@25783 0785d39b-7218-0410-832d-ea1e28bc413d

Update.

git-svn-id: https://svn.dealii.org/trunk@25782 0785d39b-7218-0410-832d-ea1e28bc413d

add ip residuals

git-svn-id: https://svn.dealii.org/trunk@25781 0785d39b-7218-0410-832d-ea1e28bc413d

ip residuals

git-svn-id: https://svn.dealii.org/trunk@25780 0785d39b-7218-0410-832d-ea1e28bc413d

rename files for Matthias

git-svn-id: https://svn.dealii.org/trunk@25778 0785d39b-7218-0410-832d-ea1e28bc413d

add cell residuals

git-svn-id: https://svn.dealii.org/trunk@25777 0785d39b-7218-0410-832d-ea1e28bc413d

add cell residual

git-svn-id: https://svn.dealii.org/trunk@25776 0785d39b-7218-0410-832d-ea1e28bc413d

Make sure people read step-40 before step-32.

git-svn-id: https://svn.dealii.org/trunk@25775 0785d39b-7218-0410-832d-ea1e28bc413d

Start branch to merge the MGDoFHandler into the regular DoFHandler.

git-svn-id: https://svn.dealii.org/branches/branch_merge_mg_into_dof_handler@25774 0785d39b-7218-0410-832d-ea1e28bc413d

scalar boundary residuals

git-svn-id: https://svn.dealii.org/trunk@25773 0785d39b-7218-0410-832d-ea1e28bc413d

boundary residuals

git-svn-id: https://svn.dealii.org/trunk@25772 0785d39b-7218-0410-832d-ea1e28bc413d

Allow some matrix-vector ops to run on distributed objects.

git-svn-id: https://svn.dealii.org/trunk@25771 0785d39b-7218-0410-832d-ea1e28bc413d

Reindent and minor text edits.

git-svn-id: https://svn.dealii.org/trunk@25768 0785d39b-7218-0410-832d-ea1e28bc413d

Updating tests for the point_value_history class
Two new tests have been added, point_value_history_02 tests the added functionality for vector fields.
point_value_history_03 tests the added functionality for scala fields.
point_value_history_01 tests backwards compatibility of the class. Note that the .cc file is unchanged. The output has changed slightly due to the new format of data files and status output, hence cmp/generic is updated.

git-svn-id: https://svn.dealii.org/trunk@25764 0785d39b-7218-0410-832d-ea1e28bc413d

Changed the method of specifying components from a list to a component mask.
Documented above changes, and provided comments clarifying that GridTools::find_active_cell_around_point can be used in the add_point(s) methods.
White space changes to improve the code structure.

git-svn-id: https://svn.dealii.org/trunk@25763 0785d39b-7218-0410-832d-ea1e28bc413d

a first version of the documentation

git-svn-id: https://svn.dealii.org/trunk@25760 0785d39b-7218-0410-832d-ea1e28bc413d

document support for clang

git-svn-id: https://svn.dealii.org/trunk@25759 0785d39b-7218-0410-832d-ea1e28bc413d

Avoid modifying a vector that has ghost elements.

git-svn-id: https://svn.dealii.org/trunk@25758 0785d39b-7218-0410-832d-ea1e28bc413d

Augment documentation.

git-svn-id: https://svn.dealii.org/trunk@25757 0785d39b-7218-0410-832d-ea1e28bc413d

link PETSc 3.1+ to libpetsc instead of libpetsccall to fix linking on gcc 4.7

git-svn-id: https://svn.dealii.org/trunk@25756 0785d39b-7218-0410-832d-ea1e28bc413d

Update refs.

git-svn-id: https://svn.dealii.org/trunk@25754 0785d39b-7218-0410-832d-ea1e28bc413d

start testing laplacian

git-svn-id: https://svn.dealii.org/trunk@25753 0785d39b-7218-0410-832d-ea1e28bc413d

Disallow modifying operations on vectors with ghost elements.

git-svn-id: https://svn.dealii.org/trunk@25751 0785d39b-7218-0410-832d-ea1e28bc413d

More links into the glossary.

git-svn-id: https://svn.dealii.org/trunk@25749 0785d39b-7218-0410-832d-ea1e28bc413d

Clarify a glossary entry.

git-svn-id: https://svn.dealii.org/trunk@25748 0785d39b-7218-0410-832d-ea1e28bc413d

Be more verbose in the description of parameters.

git-svn-id: https://svn.dealii.org/trunk@25747 0785d39b-7218-0410-832d-ea1e28bc413d

add Frobenius inner product of two Tensor of rank 2

git-svn-id: https://svn.dealii.org/trunk@25746 0785d39b-7218-0410-832d-ea1e28bc413d

Add Patterns::Map. Also fix a number of minor issues with Patterns::List.

git-svn-id: https://svn.dealii.org/trunk@25745 0785d39b-7218-0410-832d-ea1e28bc413d

Add several references to the glossary.

git-svn-id: https://svn.dealii.org/trunk@25744 0785d39b-7218-0410-832d-ea1e28bc413d

Patch by Uwe Koecher: Avoid warnings about unused variables.

git-svn-id: https://svn.dealii.org/trunk@25743 0785d39b-7218-0410-832d-ea1e28bc413d

Also set -m64 in CFLAGS if we do so in CXXFLAGS.

git-svn-id: https://svn.dealii.org/trunk@25742 0785d39b-7218-0410-832d-ea1e28bc413d

Fix list of authors of a patch.

git-svn-id: https://svn.dealii.org/trunk@25741 0785d39b-7218-0410-832d-ea1e28bc413d

Add a comment.

git-svn-id: https://svn.dealii.org/trunk@25740 0785d39b-7218-0410-832d-ea1e28bc413d

Minor edits. Make a function private that doesn't have to be in the
public interface.

git-svn-id: https://svn.dealii.org/trunk@25739 0785d39b-7218-0410-832d-ea1e28bc413d

Work around a problem with Intel+MPI.

git-svn-id: https://svn.dealii.org/trunk@25738 0785d39b-7218-0410-832d-ea1e28bc413d

One more.

git-svn-id: https://svn.dealii.org/trunk@25737 0785d39b-7218-0410-832d-ea1e28bc413d

document test better

git-svn-id: https://svn.dealii.org/trunk@25736 0785d39b-7218-0410-832d-ea1e28bc413d

make test crash

git-svn-id: https://svn.dealii.org/trunk@25735 0785d39b-7218-0410-832d-ea1e28bc413d

fix test

git-svn-id: https://svn.dealii.org/trunk@25734 0785d39b-7218-0410-832d-ea1e28bc413d

add failing test for trilinos 10.12.1

git-svn-id: https://svn.dealii.org/trunk@25733 0785d39b-7218-0410-832d-ea1e28bc413d

Fix introduced bug.

git-svn-id: https://svn.dealii.org/trunk@25732 0785d39b-7218-0410-832d-ea1e28bc413d

Make deal.II deal with the situation that p4est might install into lib64/ instead of lib/.

git-svn-id: https://svn.dealii.org/trunk@25731 0785d39b-7218-0410-832d-ea1e28bc413d

Use AC_SUBST instead of 'export'.

git-svn-id: https://svn.dealii.org/trunk@25730 0785d39b-7218-0410-832d-ea1e28bc413d

Work around a problem with the Cray C++ compiler.

git-svn-id: https://svn.dealii.org/trunk@25729 0785d39b-7218-0410-832d-ea1e28bc413d

added instantiations for parallel::distributed::Vectors

git-svn-id: https://svn.dealii.org/trunk@25728 0785d39b-7218-0410-832d-ea1e28bc413d

Piesewise multiplication of PETSc vectors and redocument.

git-svn-id: https://svn.dealii.org/trunk@25727 0785d39b-7218-0410-832d-ea1e28bc413d

Make DoFTools::make_zero_boundary_constraints work in parallel.

git-svn-id: https://svn.dealii.org/trunk@25725 0785d39b-7218-0410-832d-ea1e28bc413d

Abort if we can't produce the Makefile.dep file, whether or not the make_dependencies program terminated with an error.

git-svn-id: https://svn.dealii.org/trunk@25724 0785d39b-7218-0410-832d-ea1e28bc413d

Come up with a test that actually works.

git-svn-id: https://svn.dealii.org/trunk@25723 0785d39b-7218-0410-832d-ea1e28bc413d

Add one.

git-svn-id: https://svn.dealii.org/trunk@25722 0785d39b-7218-0410-832d-ea1e28bc413d

Several more.

git-svn-id: https://svn.dealii.org/trunk@25721 0785d39b-7218-0410-832d-ea1e28bc413d

test for finite residual

git-svn-id: https://svn.dealii.org/trunk@25720 0785d39b-7218-0410-832d-ea1e28bc413d

One more.

git-svn-id: https://svn.dealii.org/trunk@25719 0785d39b-7218-0410-832d-ea1e28bc413d

Restore comment and fix projection on faces.

git-svn-id: https://svn.dealii.org/trunk@25718 0785d39b-7218-0410-832d-ea1e28bc413d

Replaced projection-based interpolation by explicit interpolation formulas wherever possible.

git-svn-id: https://svn.dealii.org/trunk@25717 0785d39b-7218-0410-832d-ea1e28bc413d

fixed bug in find_active_cell_around_point

git-svn-id: https://svn.dealii.org/trunk@25716 0785d39b-7218-0410-832d-ea1e28bc413d

Fixed bug in find_active_cell_around_point. See the testcases bits/find_active_cell_8 and _9

git-svn-id: https://svn.dealii.org/trunk@25715 0785d39b-7218-0410-832d-ea1e28bc413d

New test for find_active_cell_around_point on a disconnected grid.

git-svn-id: https://svn.dealii.org/trunk@25714 0785d39b-7218-0410-832d-ea1e28bc413d

update publication

git-svn-id: https://svn.dealii.org/trunk@25713 0785d39b-7218-0410-832d-ea1e28bc413d

update publication

git-svn-id: https://svn.dealii.org/trunk@25712 0785d39b-7218-0410-832d-ea1e28bc413d

Undo an accidental checkin.

git-svn-id: https://svn.dealii.org/trunk@25711 0785d39b-7218-0410-832d-ea1e28bc413d

Add one.

git-svn-id: https://svn.dealii.org/trunk@25710 0785d39b-7218-0410-832d-ea1e28bc413d

Go through changes.h and make it more consistent.

git-svn-id: https://svn.dealii.org/trunk@25709 0785d39b-7218-0410-832d-ea1e28bc413d

Corrected the expected values.

git-svn-id: https://svn.dealii.org/trunk@25707 0785d39b-7218-0410-832d-ea1e28bc413d

Update of the expected results

git-svn-id: https://svn.dealii.org/trunk@25706 0785d39b-7218-0410-832d-ea1e28bc413d