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https://gitweb.dealii.org/ - dealii-svn.git/log
turcksin [Fri, 16 May 2014 22:39:58 +0000 (22:39 +0000)]
Make cmake add paralution include directory in Make.global_options.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@32931
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turcksin [Fri, 16 May 2014 19:25:40 +0000 (19:25 +0000)]
Add an include for paralution vector in time_stepping.cc
git-svn-id: https://svn.dealii.org/branches/branch_paralution@32929
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turcksin [Fri, 16 May 2014 17:12:16 +0000 (17:12 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@32926
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maier [Fri, 16 May 2014 12:05:20 +0000 (12:05 +0000)]
CMake: Cosmetic change
git-svn-id: https://svn.dealii.org/trunk@32923
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maier [Fri, 16 May 2014 12:02:21 +0000 (12:02 +0000)]
CMake: Bugfix: Detect empty variables...
git-svn-id: https://svn.dealii.org/trunk@32922
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kanschat [Fri, 16 May 2014 09:45:42 +0000 (09:45 +0000)]
forgotten inline
git-svn-id: https://svn.dealii.org/trunk@32921
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kanschat [Fri, 16 May 2014 09:40:20 +0000 (09:40 +0000)]
conversion from NamedData to AnyData and initialization of NamedSelection with AnyData
git-svn-id: https://svn.dealii.org/trunk@32920
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kanschat [Fri, 16 May 2014 07:49:06 +0000 (07:49 +0000)]
typo in anydata removed and new function try_read tested
git-svn-id: https://svn.dealii.org/trunk@32919
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kanschat [Fri, 16 May 2014 07:26:04 +0000 (07:26 +0000)]
add trial access
git-svn-id: https://svn.dealii.org/trunk@32918
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kanschat [Fri, 16 May 2014 06:13:51 +0000 (06:13 +0000)]
add time and timestep to anydata and fix documentation
git-svn-id: https://svn.dealii.org/trunk@32917
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kronbichler [Fri, 16 May 2014 05:53:16 +0000 (05:53 +0000)]
Fix typo
git-svn-id: https://svn.dealii.org/trunk@32916
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maier [Thu, 15 May 2014 22:17:20 +0000 (22:17 +0000)]
CMake: Finalize overhaul:
* Switch Boost as well.
* Refactor configure/configure_* stuff
* Update documentation
git-svn-id: https://svn.dealii.org/trunk@32915
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maier [Thu, 15 May 2014 22:17:17 +0000 (22:17 +0000)]
CMake: Fix spelling
git-svn-id: https://svn.dealii.org/trunk@32914
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maier [Thu, 15 May 2014 20:17:23 +0000 (20:17 +0000)]
CMake: Do not forget to checkin updated header
git-svn-id: https://svn.dealii.org/trunk@32913
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maier [Thu, 15 May 2014 20:06:33 +0000 (20:06 +0000)]
CMake: Port LAPACK as well
git-svn-id: https://svn.dealii.org/trunk@32912
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maier [Thu, 15 May 2014 20:06:30 +0000 (20:06 +0000)]
CMake: Port MPI, BZIP2 and ZLIB to new find mechanism
git-svn-id: https://svn.dealii.org/trunk@32911
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kanschat [Thu, 15 May 2014 19:59:33 +0000 (19:59 +0000)]
Change documentation for nonlinear problems
git-svn-id: https://svn.dealii.org/trunk@32910
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maier [Thu, 15 May 2014 18:18:46 +0000 (18:18 +0000)]
CMake: Check for MPI compatibility
git-svn-id: https://svn.dealii.org/trunk@32909
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maier [Thu, 15 May 2014 17:08:01 +0000 (17:08 +0000)]
CMake: and find petsc again ;-)
git-svn-id: https://svn.dealii.org/trunk@32908
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maier [Thu, 15 May 2014 17:07:18 +0000 (17:07 +0000)]
CMake: Proof of conecpt:
Be a bit more verbose about cached test results and print the FIND_*()
parameter line if a search is unsuccessful
git-svn-id: https://svn.dealii.org/trunk@32907
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maier [Thu, 15 May 2014 16:14:49 +0000 (16:14 +0000)]
CMake: Cleanup: Well, this is now obsolete
git-svn-id: https://svn.dealii.org/trunk@32906
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maier [Thu, 15 May 2014 16:14:47 +0000 (16:14 +0000)]
CMake: Remove dump-cache feature.
CMake-2.12* is able to read in a CMakeCache.txt file directly, so remove
this horrible code
git-svn-id: https://svn.dealii.org/trunk@32905
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maier [Thu, 15 May 2014 16:14:45 +0000 (16:14 +0000)]
CMake: Some sanity, part II:
* Define global suffix lists for all the FOREACH loops over feature and
deal.II variables.
* Sanely purge all variables associated with a feature if the feature gets
disabled
git-svn-id: https://svn.dealii.org/trunk@32904
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maier [Thu, 15 May 2014 16:14:42 +0000 (16:14 +0000)]
CMake: Some sanity, part I:
Save all cached variables belonging to a feature in a variable
FEATURE_CLEAR_VARIABLES so that we know what cache entry belongs to a
feature.
git-svn-id: https://svn.dealii.org/trunk@32903
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maier [Thu, 15 May 2014 12:59:56 +0000 (12:59 +0000)]
Documentation: Clarify the state of DEAL_II_LINKER_FLAGS
git-svn-id: https://svn.dealii.org/trunk@32901
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kanschat [Tue, 13 May 2014 08:22:23 +0000 (08:22 +0000)]
add missing inline
git-svn-id: https://svn.dealii.org/trunk@32900
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kronbichler [Mon, 12 May 2014 19:35:36 +0000 (19:35 +0000)]
Reduce size of matrix with non-real eigenvalues to avoid trouble with roundoff.
git-svn-id: https://svn.dealii.org/trunk@32899
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kronbichler [Sun, 11 May 2014 09:57:47 +0000 (09:57 +0000)]
Sort eigenvalues.
git-svn-id: https://svn.dealii.org/trunk@32898
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kronbichler [Sun, 11 May 2014 09:44:02 +0000 (09:44 +0000)]
Compute eigenvalues with GMRES
git-svn-id: https://svn.dealii.org/trunk@32897
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bangerth [Sat, 10 May 2014 11:42:58 +0000 (11:42 +0000)]
Another one.
git-svn-id: https://svn.dealii.org/trunk@32896
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bangerth [Thu, 8 May 2014 23:41:57 +0000 (23:41 +0000)]
Patch by Giorgos Kourakos: Make GridIn::read_vtk less rigid.
git-svn-id: https://svn.dealii.org/trunk@32895
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bangerth [Thu, 8 May 2014 23:41:35 +0000 (23:41 +0000)]
Patch by Giorgos Kourakos: Make GridIn::read_vtk less rigid.
git-svn-id: https://svn.dealii.org/trunk@32894
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young [Thu, 8 May 2014 14:34:52 +0000 (14:34 +0000)]
Fix typo.
git-svn-id: https://svn.dealii.org/trunk@32893
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bangerth [Wed, 7 May 2014 22:01:02 +0000 (22:01 +0000)]
One more.
git-svn-id: https://svn.dealii.org/trunk@32892
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maier [Wed, 7 May 2014 17:53:40 +0000 (17:53 +0000)]
Remove obsolete file
git-svn-id: https://svn.dealii.org/trunk@32891
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heltai [Wed, 7 May 2014 17:17:14 +0000 (17:17 +0000)]
Added QSorted quadrature rule.
git-svn-id: https://svn.dealii.org/trunk@32890
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kronbichler [Mon, 5 May 2014 14:53:30 +0000 (14:53 +0000)]
Update test
git-svn-id: https://svn.dealii.org/trunk@32888
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kronbichler [Mon, 5 May 2014 08:00:37 +0000 (08:00 +0000)]
Mention change
git-svn-id: https://svn.dealii.org/trunk@32887
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kronbichler [Mon, 5 May 2014 07:48:39 +0000 (07:48 +0000)]
Add methods VectorizedArray::load and VectorizedArray store for vectorized read and write of unaligned memory addresses. This also fixes the step-48 test case problems
git-svn-id: https://svn.dealii.org/trunk@32886
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bangerth [Mon, 5 May 2014 03:23:03 +0000 (03:23 +0000)]
Remove SparsityTools::size_type and replace it by the appropriate size_type of the sparsity pattern we use.
git-svn-id: https://svn.dealii.org/trunk@32885
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bangerth [Mon, 5 May 2014 03:03:56 +0000 (03:03 +0000)]
Split output files for 32 and 64 bit mode.
git-svn-id: https://svn.dealii.org/trunk@32884
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bangerth [Mon, 5 May 2014 02:58:09 +0000 (02:58 +0000)]
Add one test.
git-svn-id: https://svn.dealii.org/trunk@32883
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kronbichler [Sat, 3 May 2014 10:48:22 +0000 (10:48 +0000)]
Mention change
git-svn-id: https://svn.dealii.org/trunk@32880
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kronbichler [Sat, 3 May 2014 10:48:10 +0000 (10:48 +0000)]
step-6 uses the new way of dealing with constraints, i.e., applying them on the fly, so mention this in step-27 and step-16. In step-16, also avoid using deprecated interfaces to multigrid data structures
git-svn-id: https://svn.dealii.org/trunk@32879
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turcksin [Fri, 2 May 2014 20:25:11 +0000 (20:25 +0000)]
Start a tutorial using the Runge-Kutta methods implemented in TimeStepping.h
git-svn-id: https://svn.dealii.org/trunk@32878
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bangerth [Fri, 2 May 2014 15:07:52 +0000 (15:07 +0000)]
Re-define one of the iterator typedefs to make it consistent with the
corresponding one in ::DoFHandler.
git-svn-id: https://svn.dealii.org/trunk@32877
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bangerth [Thu, 1 May 2014 03:05:58 +0000 (03:05 +0000)]
Fix a grammar mistake.
git-svn-id: https://svn.dealii.org/trunk@32870
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bangerth [Thu, 1 May 2014 03:05:08 +0000 (03:05 +0000)]
Better document another batch of iterators.
git-svn-id: https://svn.dealii.org/trunk@32869
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bangerth [Wed, 30 Apr 2014 15:48:50 +0000 (15:48 +0000)]
Add another reference.
git-svn-id: https://svn.dealii.org/trunk@32868
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bangerth [Wed, 30 Apr 2014 13:41:30 +0000 (13:41 +0000)]
Limit concurrency for non-MPI tests.
git-svn-id: https://svn.dealii.org/trunk@32867
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bangerth [Wed, 30 Apr 2014 12:25:07 +0000 (12:25 +0000)]
Clarify some of the function docs.
git-svn-id: https://svn.dealii.org/trunk@32866
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bangerth [Wed, 30 Apr 2014 12:04:32 +0000 (12:04 +0000)]
Reshuffle and sort the contents of this file.
git-svn-id: https://svn.dealii.org/trunk@32865
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bangerth [Wed, 30 Apr 2014 10:32:53 +0000 (10:32 +0000)]
Improve documentation of a function.
git-svn-id: https://svn.dealii.org/trunk@32864
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kronbichler [Wed, 30 Apr 2014 09:15:00 +0000 (09:15 +0000)]
Fix FE_DGQArbitraryNodes::has_support_on_face
git-svn-id: https://svn.dealii.org/trunk@32863
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turcksin [Tue, 29 Apr 2014 19:43:27 +0000 (19:43 +0000)]
Fix a mistake on the sign in the residual formular for time_stepping.
git-svn-id: https://svn.dealii.org/trunk@32858
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kronbichler [Tue, 29 Apr 2014 14:55:24 +0000 (14:55 +0000)]
Initialize ghost elements to zero
git-svn-id: https://svn.dealii.org/trunk@32857
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bangerth [Tue, 29 Apr 2014 03:12:22 +0000 (03:12 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@32856
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maier [Mon, 28 Apr 2014 22:24:34 +0000 (22:24 +0000)]
Be a bit less restrictive
git-svn-id: https://svn.dealii.org/trunk@32855
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maier [Mon, 28 Apr 2014 21:49:36 +0000 (21:49 +0000)]
CMake: Limit concurrency of mpi tests
git-svn-id: https://svn.dealii.org/trunk@32854
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kronbichler [Mon, 28 Apr 2014 19:53:24 +0000 (19:53 +0000)]
Cleanup file fe_trace.cc
git-svn-id: https://svn.dealii.org/trunk@32853
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turcksin [Mon, 28 Apr 2014 16:22:08 +0000 (16:22 +0000)]
Merge from trunk.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@32852
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bangerth [Mon, 28 Apr 2014 01:53:52 +0000 (01:53 +0000)]
Make two member variables private. Improve documentation of the enums that are used for these variables. Further improve documentation in a couple of places.
git-svn-id: https://svn.dealii.org/trunk@32851
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bangerth [Mon, 28 Apr 2014 01:27:14 +0000 (01:27 +0000)]
Another one.
git-svn-id: https://svn.dealii.org/trunk@32850
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bangerth [Sun, 27 Apr 2014 16:15:34 +0000 (16:15 +0000)]
Clarify and correct documentation.
git-svn-id: https://svn.dealii.org/trunk@32849
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maier [Sat, 26 Apr 2014 17:30:00 +0000 (17:30 +0000)]
CMake: Provide our own PACKAGE_HANDLE_STANDARD_ARGS
git-svn-id: https://svn.dealii.org/trunk@32845
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maier [Sat, 26 Apr 2014 13:31:38 +0000 (13:31 +0000)]
CMake: Refactor Find modules
git-svn-id: https://svn.dealii.org/trunk@32844
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maier [Sat, 26 Apr 2014 12:28:38 +0000 (12:28 +0000)]
CMake: Some minor cleanup
git-svn-id: https://svn.dealii.org/trunk@32843
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bangerth [Sat, 26 Apr 2014 12:05:00 +0000 (12:05 +0000)]
More minor editorial adjustments.
git-svn-id: https://svn.dealii.org/trunk@32842
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maier [Sat, 26 Apr 2014 11:56:51 +0000 (11:56 +0000)]
Fix a test
git-svn-id: https://svn.dealii.org/trunk@32841
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bangerth [Sat, 26 Apr 2014 11:53:22 +0000 (11:53 +0000)]
Minor text edits.
git-svn-id: https://svn.dealii.org/trunk@32840
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maier [Sat, 26 Apr 2014 00:38:26 +0000 (00:38 +0000)]
Add a boolean autopartition to
parallel::distributed::Triangulation<...>::load to control automatic
reparitioning behaviour of p4est
git-svn-id: https://svn.dealii.org/trunk@32839
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bangerth [Fri, 25 Apr 2014 19:03:08 +0000 (19:03 +0000)]
Complete search for now.
git-svn-id: https://svn.dealii.org/trunk@32830
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heister [Fri, 25 Apr 2014 14:09:15 +0000 (14:09 +0000)]
tweak to test script status message that confused me
git-svn-id: https://svn.dealii.org/trunk@32829
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bangerth [Fri, 25 Apr 2014 14:01:05 +0000 (14:01 +0000)]
Start work on bug 198 (https://code.google.com/p/dealii/issues/detail?id=198) documenting the exact types we have for iterator typedefs.
git-svn-id: https://svn.dealii.org/trunk@32828
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bangerth [Fri, 25 Apr 2014 13:18:15 +0000 (13:18 +0000)]
Augment the documentation in a couple of places.
git-svn-id: https://svn.dealii.org/trunk@32827
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maier [Fri, 25 Apr 2014 10:03:16 +0000 (10:03 +0000)]
Testsuite: Fix a buffer overflow that makes clang unhappy in debug mode
git-svn-id: https://svn.dealii.org/trunk@32826
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bangerth [Fri, 25 Apr 2014 03:19:55 +0000 (03:19 +0000)]
Augment documentation somewhat.
git-svn-id: https://svn.dealii.org/trunk@32825
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bangerth [Thu, 24 Apr 2014 21:41:43 +0000 (21:41 +0000)]
Several more.
git-svn-id: https://svn.dealii.org/trunk@32824
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bangerth [Thu, 24 Apr 2014 16:04:32 +0000 (16:04 +0000)]
One update.
git-svn-id: https://svn.dealii.org/trunk@32823
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bangerth [Wed, 23 Apr 2014 22:44:59 +0000 (22:44 +0000)]
Adjust the include guard to the name of the file.
git-svn-id: https://svn.dealii.org/trunk@32822
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bangerth [Wed, 23 Apr 2014 21:42:28 +0000 (21:42 +0000)]
Add one.
git-svn-id: https://svn.dealii.org/trunk@32821
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bangerth [Wed, 23 Apr 2014 20:16:14 +0000 (20:16 +0000)]
Expand on a TODO.
git-svn-id: https://svn.dealii.org/trunk@32820
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bangerth [Wed, 23 Apr 2014 15:40:17 +0000 (15:40 +0000)]
Also update the 64-bit output.
git-svn-id: https://svn.dealii.org/trunk@32819
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kronbichler [Wed, 23 Apr 2014 14:36:45 +0000 (14:36 +0000)]
Initial test to detect optimization bug for gcc-4.6
git-svn-id: https://svn.dealii.org/trunk@32818
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kronbichler [Wed, 23 Apr 2014 14:10:42 +0000 (14:10 +0000)]
Fix step-48 on tester by computing the value as in step-48b (with an unnecessary second computation for std::sin). This shows that we indeed look at a compiler bug.
git-svn-id: https://svn.dealii.org/trunk@32817
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maier [Wed, 23 Apr 2014 12:59:22 +0000 (12:59 +0000)]
CMake: Ensure that DIFF_EXECUTABLE is always valid
git-svn-id: https://svn.dealii.org/trunk@32816
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bangerth [Wed, 23 Apr 2014 12:11:32 +0000 (12:11 +0000)]
Output only the first few lines of numdiff output if a test fails. Then output
the first 50 lines of regular diff since it's so much more readable.
git-svn-id: https://svn.dealii.org/trunk@32815
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maier [Wed, 23 Apr 2014 11:20:01 +0000 (11:20 +0000)]
Revert "CMake: Silence warning w654 with icc: "overloaded virtual function is only partially overriden" - I assume this is intended..."
No not intended and we schould fix it..
git-svn-id: https://svn.dealii.org/trunk@32814
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maier [Wed, 23 Apr 2014 09:07:23 +0000 (09:07 +0000)]
Testsuite: Lazily fix a failing test for clang
git-svn-id: https://svn.dealii.org/trunk@32813
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maier [Wed, 23 Apr 2014 08:18:10 +0000 (08:18 +0000)]
CMake: Silence warning w654 with icc: "overloaded virtual function is only partially overriden" - I assume this is intended...
git-svn-id: https://svn.dealii.org/trunk@32812
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maier [Wed, 23 Apr 2014 08:18:07 +0000 (08:18 +0000)]
CMake: Hide a warning with clang: -Wno-unsupported-friend
git-svn-id: https://svn.dealii.org/trunk@32811
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maier [Tue, 22 Apr 2014 18:57:07 +0000 (18:57 +0000)]
Testsuite: Fix one more test
git-svn-id: https://svn.dealii.org/trunk@32810
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maier [Tue, 22 Apr 2014 18:34:58 +0000 (18:34 +0000)]
Testsuite: Bugfix: Make solver_02 happy again
git-svn-id: https://svn.dealii.org/trunk@32809
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maier [Tue, 22 Apr 2014 15:34:14 +0000 (15:34 +0000)]
Testsuite: Remove old comparison files for gcc 4.1.2, try to make some tests more platform independent
git-svn-id: https://svn.dealii.org/trunk@32808
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maier [Tue, 22 Apr 2014 14:22:41 +0000 (14:22 +0000)]
CMake: Bugfixes:
Use DEAL_II_CXX_FLAGS for the top level library target
Set the linker language to cxx
git-svn-id: https://svn.dealii.org/trunk@32805
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heister [Tue, 22 Apr 2014 13:46:53 +0000 (13:46 +0000)]
revert r32801 because we suppress boost version information now
git-svn-id: https://svn.dealii.org/trunk@32804
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heister [Tue, 22 Apr 2014 13:46:37 +0000 (13:46 +0000)]
make serialization tests independent of boost.serialize version number by writing them with 'no_header'
git-svn-id: https://svn.dealii.org/trunk@32803
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maier [Tue, 22 Apr 2014 10:31:02 +0000 (10:31 +0000)]
Testsuite: Invert order of files to diff so that the output shows the changes with respect to the expected output
git-svn-id: https://svn.dealii.org/trunk@32802
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maier [Tue, 22 Apr 2014 10:28:15 +0000 (10:28 +0000)]
Testsuite: Try to normalize boost serialization output
git-svn-id: https://svn.dealii.org/trunk@32801
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kronbichler [Tue, 22 Apr 2014 06:36:56 +0000 (06:36 +0000)]
Use another way to compute the value to be submitted. This should fix the final norm (but not the test case) on the tester
git-svn-id: https://svn.dealii.org/trunk@32800
0785d39b -7218-0410-832d-
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