]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
8 years agoRename and deprecate MGLevelObject::clear()
Jonathan Robey [Fri, 5 Aug 2016 22:59:34 +0000 (15:59 -0700)]
Rename and deprecate MGLevelObject::clear()

8 years agoMerge pull request #2921 from tamiko/cmake-fix-link-interface
Denis Davydov [Fri, 5 Aug 2016 17:34:32 +0000 (19:34 +0200)]
Merge pull request #2921 from tamiko/cmake-fix-link-interface

CMake: Bugfix: Clean up Boost-Python setup

8 years agoMerge pull request #2919 from tjhei/fix_make_cell_patches
Wolfgang Bangerth [Fri, 5 Aug 2016 17:06:37 +0000 (12:06 -0500)]
Merge pull request #2919 from tjhei/fix_make_cell_patches

fix make_cell_patches from #2907

8 years agofix make_cell_patches 2919/head
Timo Heister [Thu, 4 Aug 2016 20:01:16 +0000 (22:01 +0200)]
fix make_cell_patches

- fix instantiation to match declaration
- remove spacedim default value
- instantiate also for codim

8 years agoCMake: Print informative error messages in case of configuration failure 2921/head
Matthias Maier [Fri, 5 Aug 2016 16:14:51 +0000 (11:14 -0500)]
CMake: Print informative error messages in case of configuration failure

8 years agoCMake: Change order of libraries
Matthias Maier [Fri, 5 Aug 2016 15:59:20 +0000 (10:59 -0500)]
CMake: Change order of libraries

8 years agoCMake: Use FindBOOST.cmake to find python libraries in contrib/python_bindings
Matthias Maier [Fri, 5 Aug 2016 15:44:00 +0000 (10:44 -0500)]
CMake: Use FindBOOST.cmake to find python libraries in contrib/python_bindings

8 years agoCMake: Bugfix: Do not set up python component for boost
Matthias Maier [Fri, 5 Aug 2016 15:19:50 +0000 (10:19 -0500)]
CMake: Bugfix: Do not set up python component for boost

8 years agoCMake: Bugfix: Also expand PYTHON_BINDINGS to DEAL_II_COMPONENT_*
Matthias Maier [Fri, 5 Aug 2016 15:18:59 +0000 (10:18 -0500)]
CMake: Bugfix: Also expand PYTHON_BINDINGS to DEAL_II_COMPONENT_*

8 years agoMerge pull request #2918 from bangerth/fix-typo
Bruno Turcksin [Thu, 4 Aug 2016 17:31:18 +0000 (13:31 -0400)]
Merge pull request #2918 from bangerth/fix-typo

Fix a typo.

8 years agoFix a typo. 2918/head
Wolfgang Bangerth [Thu, 4 Aug 2016 17:25:43 +0000 (11:25 -0600)]
Fix a typo.

8 years agoMerge pull request #2917 from luca-heltai/fix-tests-manifold
Wolfgang Bangerth [Thu, 4 Aug 2016 17:25:11 +0000 (12:25 -0500)]
Merge pull request #2917 from luca-heltai/fix-tests-manifold

Fix tests manifold

8 years agoReverted to working versions of Mauro. 2917/head
Luca Heltai [Thu, 4 Aug 2016 16:30:27 +0000 (16:30 +0000)]
Reverted to working versions of Mauro.

8 years agoAdded get_new_point with two points and a weight.
Luca Heltai [Tue, 12 Jul 2016 10:39:30 +0000 (12:39 +0200)]
Added get_new_point with two points and a weight.

8 years agoMerge pull request #2916 from tamiko/master
Denis Davydov [Thu, 4 Aug 2016 13:03:25 +0000 (15:03 +0200)]
Merge pull request #2916 from tamiko/master

CMake: Bugfix: Do not annotate the python module with VERSION/SOVERSION

8 years agoCMake: Bugfix: Do not annotate the python module with VERSION/SOVERSION 2916/head
Matthias Maier [Thu, 4 Aug 2016 12:59:21 +0000 (07:59 -0500)]
CMake: Bugfix: Do not annotate the python module with VERSION/SOVERSION

This fixes a regression on Mac where Python modules are a dynamically
loaded module (".so") instead of a shared library (".dylib").

Closes #2915

8 years agoMerge pull request #2810 from luca-heltai/spherical-manifold-only
Luca Heltai [Thu, 4 Aug 2016 09:15:01 +0000 (11:15 +0200)]
Merge pull request #2810 from luca-heltai/spherical-manifold-only

SphericalManifold -> PolarManifold

8 years agoAdded entry to changes.h 2810/head
Luca Heltai [Thu, 4 Aug 2016 08:45:54 +0000 (10:45 +0200)]
Added entry to changes.h

8 years agoAddressing last comments by WB.
Luca Heltai [Thu, 4 Aug 2016 08:38:21 +0000 (10:38 +0200)]
Addressing last comments by WB.

8 years agoRefactored get_new_point with three arguments to get_intermediate_points.
Luca Heltai [Thu, 14 Jul 2016 17:00:38 +0000 (19:00 +0200)]
Refactored get_new_point with three arguments to get_intermediate_points.

8 years agoUpdated documentation for Manifolds.
Luca Heltai [Thu, 14 Jul 2016 16:06:22 +0000 (18:06 +0200)]
Updated documentation for Manifolds.

8 years agoRemove this commit
ESeNonFossiIo [Thu, 14 Jul 2016 16:13:28 +0000 (18:13 +0200)]
Remove this commit

8 years agoGrammar
ESeNonFossiIo [Thu, 14 Jul 2016 16:03:04 +0000 (18:03 +0200)]
Grammar

8 years agoAssert for get_tantgent_vector of SphericalManifold
ESeNonFossiIo [Thu, 14 Jul 2016 15:50:52 +0000 (17:50 +0200)]
Assert for get_tantgent_vector of SphericalManifold

8 years agoFixed indentation.
Luca Heltai [Tue, 12 Jul 2016 11:38:09 +0000 (13:38 +0200)]
Fixed indentation.

8 years agoFixed bug in mapping_manifold
Luca Heltai [Tue, 12 Jul 2016 11:29:00 +0000 (13:29 +0200)]
Fixed bug in mapping_manifold

8 years agoFixed comments in tests.
Luca Heltai [Tue, 12 Jul 2016 11:27:39 +0000 (13:27 +0200)]
Fixed comments in tests.

8 years agoSphericalManifold to PolarManifold.
Luca Heltai [Tue, 12 Jul 2016 11:26:21 +0000 (13:26 +0200)]
SphericalManifold to PolarManifold.

Moved the old version of SphericalManifold to PolarManifold, and
implemented a new SphericalManifold based on geodesics.

8 years agoAdded get_new_point with two points and a weight.
Luca Heltai [Tue, 12 Jul 2016 10:39:30 +0000 (12:39 +0200)]
Added get_new_point with two points and a weight.

8 years agoMerge pull request #2913 from Rombur/typo
Denis Davydov [Wed, 3 Aug 2016 21:28:24 +0000 (23:28 +0200)]
Merge pull request #2913 from Rombur/typo

Fix a typo in the documentation.

8 years agoFix a typo in the documentation. 2913/head
Bruno Turcksin [Wed, 3 Aug 2016 21:26:28 +0000 (17:26 -0400)]
Fix a typo in the documentation.

8 years agoMerge pull request #2912 from Rombur/python_change
Wolfgang Bangerth [Wed, 3 Aug 2016 21:08:08 +0000 (16:08 -0500)]
Merge pull request #2912 from Rombur/python_change

Add an entry in changes.h for the new Python bindings

8 years agoAdd an entry in changes.h for the new Python bindings 2912/head
Bruno Turcksin [Wed, 3 Aug 2016 21:05:07 +0000 (17:05 -0400)]
Add an entry in changes.h for the new Python bindings

8 years agoMerge pull request #2834 from Rombur/python
Bruno Turcksin [Wed, 3 Aug 2016 20:36:24 +0000 (16:36 -0400)]
Merge pull request #2834 from Rombur/python

Python

8 years agoRename the python modules. 2834/head
Bruno Turcksin [Mon, 25 Jul 2016 22:15:43 +0000 (18:15 -0400)]
Rename the python modules.

8 years agoRename python libraries
Matthias Maier [Mon, 25 Jul 2016 14:04:24 +0000 (09:04 -0500)]
Rename python libraries

8 years agoCMake: build a debug and release version of the python wrappers, set up installation
Matthias Maier [Fri, 22 Jul 2016 20:32:35 +0000 (15:32 -0500)]
CMake: build a debug and release version of the python wrappers, set up installation

8 years agoCMake: Add a component DEAL_II_COMPONENT_PYTHON_BINDINGS
Matthias Maier [Fri, 22 Jul 2016 19:13:29 +0000 (14:13 -0500)]
CMake: Add a component DEAL_II_COMPONENT_PYTHON_BINDINGS

8 years agoUse DEAL_II_WITH_CXX11 to guard c++11 code.
Bruno Turcksin [Fri, 22 Jul 2016 18:06:30 +0000 (14:06 -0400)]
Use DEAL_II_WITH_CXX11 to guard c++11 code.

8 years agoMove python wrapper to contrib/python-bindings.
Bruno Turcksin [Fri, 22 Jul 2016 17:30:52 +0000 (13:30 -0400)]
Move python wrapper to contrib/python-bindings.

8 years agoChange namespace for the python wrapper.
Bruno Turcksin [Fri, 22 Jul 2016 15:00:43 +0000 (11:00 -0400)]
Change namespace for the python wrapper.

8 years agoClean python documentation.
Bruno Turcksin [Fri, 15 Jul 2016 13:10:19 +0000 (09:10 -0400)]
Clean python documentation.

8 years agoEnable to turn python wrapper off.
Bruno Turcksin [Sun, 10 Jul 2016 03:58:12 +0000 (23:58 -0400)]
Enable to turn python wrapper off.

8 years agoReplace __iter__ by active_cells.
Bruno Turcksin [Tue, 28 Jun 2016 21:19:06 +0000 (17:19 -0400)]
Replace __iter__ by active_cells.

8 years agoAdd const to variables and functions.
Bruno Turcksin [Tue, 28 Jun 2016 13:12:38 +0000 (09:12 -0400)]
Add const to variables and functions.

8 years agoOutput triangulation and add adaptive mesh refinement.
Bruno Turcksin [Mon, 27 Jun 2016 15:16:12 +0000 (11:16 -0400)]
Output triangulation and add adaptive mesh refinement.

8 years agoAdd CellAccessor wrapper.
Bruno Turcksin [Fri, 24 Jun 2016 20:47:20 +0000 (16:47 -0400)]
Add CellAccessor wrapper.

8 years agoAllow Triangulation to set spacedim different than dim.
Bruno Turcksin [Fri, 17 Jun 2016 14:31:39 +0000 (10:31 -0400)]
Allow Triangulation to set spacedim different than dim.

8 years agoAdd tests and fix a few bugs.
Bruno Turcksin [Thu, 16 Jun 2016 13:57:59 +0000 (09:57 -0400)]
Add tests and fix a few bugs.

8 years agoUse helper functions to decrease code duplication.
Bruno Turcksin [Mon, 13 Jun 2016 13:29:21 +0000 (09:29 -0400)]
Use helper functions to decrease code duplication.

8 years agoMake a few functions const and remove reset_triangulation.
Bruno Turcksin [Mon, 13 Jun 2016 12:47:27 +0000 (08:47 -0400)]
Make a few functions const and remove reset_triangulation.

8 years agoAdd 3D for Triangulation and Point interface.
Bruno Turcksin [Fri, 10 Jun 2016 12:02:10 +0000 (08:02 -0400)]
Add 3D for Triangulation and Point interface.

8 years agoMove PointWrapper to its own files.
Bruno Turcksin [Fri, 3 Jun 2016 15:16:50 +0000 (11:16 -0400)]
Move PointWrapper to its own files.

8 years agoImprove Point interface.
Bruno Turcksin [Thu, 2 Jun 2016 18:53:47 +0000 (14:53 -0400)]
Improve Point interface.

8 years agoUse templated functions.
Bruno Turcksin [Wed, 1 Jun 2016 15:40:05 +0000 (11:40 -0400)]
Use templated functions.

8 years agoAdd more GridGenerator.
Bruno Turcksin [Wed, 1 Jun 2016 13:40:50 +0000 (09:40 -0400)]
Add more GridGenerator.

8 years agoAdd default arguments for GridGenerator::hyper_cube.
Bruno Turcksin [Tue, 31 May 2016 18:34:12 +0000 (14:34 -0400)]
Add default arguments for GridGenerator::hyper_cube.

8 years agoImprove documentation in python and add save/load functions.
Bruno Turcksin [Fri, 27 May 2016 18:32:41 +0000 (14:32 -0400)]
Improve documentation in python and add save/load functions.

8 years agoAdd python wrapper for Triangulation.
Bruno Turcksin [Tue, 17 May 2016 20:53:11 +0000 (16:53 -0400)]
Add python wrapper for Triangulation.

8 years agoMerge pull request #2910 from drwells/remove-const-cast-3
David Wells [Wed, 3 Aug 2016 17:14:13 +0000 (13:14 -0400)]
Merge pull request #2910 from drwells/remove-const-cast-3

Remove const cast 3

8 years agoMerge pull request #2911 from bangerth/improve-control-flow-readability
Denis Davydov [Wed, 3 Aug 2016 14:38:08 +0000 (16:38 +0200)]
Merge pull request #2911 from bangerth/improve-control-flow-readability

Make control flow easier to read.

8 years agoRemove unused const casts. 2910/head
David Wells [Wed, 3 Aug 2016 02:43:15 +0000 (22:43 -0400)]
Remove unused const casts.

make_flux_sparsity_pattern no longer uses on user flags so we do not
need to load and save them.

8 years agoRedo the hp make_flux_sparsity_pattern logic.
David Wells [Wed, 3 Aug 2016 02:39:17 +0000 (22:39 -0400)]
Redo the hp make_flux_sparsity_pattern logic.

This now the same as the non-hp version, which was changed in
9b037871bb. In brief: this function uses the total ordering of cells
instead of user flags to figure out when a face may be skipped.

8 years agoMake control flow easier to read. 2911/head
Wolfgang Bangerth [Wed, 3 Aug 2016 13:16:02 +0000 (07:16 -0600)]
Make control flow easier to read.

8 years agoMerge pull request #2907 from guidokanschat/locally_owned_cell_patches
Wolfgang Bangerth [Wed, 3 Aug 2016 02:11:20 +0000 (21:11 -0500)]
Merge pull request #2907 from guidokanschat/locally_owned_cell_patches

restrict cell patches to locally owned cells

8 years agochange DoFHandler template 2907/head
Guido Kanschat [Tue, 2 Aug 2016 19:10:28 +0000 (21:10 +0200)]
change DoFHandler template

8 years agoadd entries to changelog
Guido Kanschat [Tue, 2 Aug 2016 15:41:44 +0000 (17:41 +0200)]
add entries to changelog

8 years agochange from locally_owned to localy_owned_on_level and test on lower levels as well
Guido Kanschat [Tue, 2 Aug 2016 14:12:08 +0000 (16:12 +0200)]
change from locally_owned to localy_owned_on_level and test on lower levels as well

8 years agomake DoFTools::make_cell_patches work with parallel::distributed::Triangulation
Guido Kanschat [Tue, 2 Aug 2016 12:59:22 +0000 (14:59 +0200)]
make DoFTools::make_cell_patches work with parallel::distributed::Triangulation

8 years agoMerge pull request #2885 from tamiko/cmake_improve_gsl_interface
Matthias Maier [Tue, 2 Aug 2016 00:01:19 +0000 (19:01 -0500)]
Merge pull request #2885 from tamiko/cmake_improve_gsl_interface

CMake: Bugfix: Also pick up cblas for the gsl link interface

8 years agoadd a news/changes.h entry 2885/head
Matthias Maier [Fri, 29 Jul 2016 01:48:37 +0000 (20:48 -0500)]
add a news/changes.h entry

8 years agoCMake: Also detect gsl version and export GSL_VERSION
Matthias Maier [Fri, 29 Jul 2016 01:38:59 +0000 (20:38 -0500)]
CMake: Also detect gsl version and export GSL_VERSION

8 years agoCMake: Bugfix: Also pick up cblas for the gsl link interface
Matthias Maier [Fri, 29 Jul 2016 01:27:47 +0000 (20:27 -0500)]
CMake: Bugfix: Also pick up cblas for the gsl link interface

8 years agoMerge pull request #2906 from masterleinad/references_step35
Wolfgang Bangerth [Mon, 1 Aug 2016 19:47:04 +0000 (14:47 -0500)]
Merge pull request #2906 from masterleinad/references_step35

Add literature to step-35

8 years agoAdd literature to step-35 2906/head
Daniel Arndt [Mon, 1 Aug 2016 17:40:35 +0000 (19:40 +0200)]
Add literature to step-35

8 years agoMerge pull request #2905 from tamiko/cmake_2.8.8_compatibility
Wolfgang Bangerth [Mon, 1 Aug 2016 18:39:50 +0000 (13:39 -0500)]
Merge pull request #2905 from tamiko/cmake_2.8.8_compatibility

CMake: Bugfix: Strip input variables for CHECK_COMPILER_SETUP

8 years agoCMake: Bugfix: Strip input variables for CHECK_COMPILER_SETUP 2905/head
Matthias Maier [Mon, 1 Aug 2016 16:38:01 +0000 (11:38 -0500)]
CMake: Bugfix: Strip input variables for CHECK_COMPILER_SETUP

CMake 2.8.8 (and possibly till 2.8.11) do not normalize
CMAKE_REQUIRED_FLAGS and CMAKE_REQUIRED_LIBRARIES correctly leading to
stray "-l " in the linker command line.

Fix this by normalizing the input of CHECK_COMPILER_SETUP by stripping
leading and trailing whitespace

8 years agoMerge pull request #2901 from class4kayaker/elim_rand_shuffle
Wolfgang Bangerth [Mon, 1 Aug 2016 14:13:30 +0000 (09:13 -0500)]
Merge pull request #2901 from class4kayaker/elim_rand_shuffle

Eliminate random_shuffle

8 years agoAdjust reference to random_shuffle in comment 2901/head
Jonathan Robey [Mon, 1 Aug 2016 06:38:03 +0000 (23:38 -0700)]
Adjust reference to random_shuffle in comment

8 years agoMerge pull request #2894 from tjhei/step-17-dsp
Wolfgang Bangerth [Mon, 1 Aug 2016 13:39:30 +0000 (08:39 -0500)]
Merge pull request #2894 from tjhei/step-17-dsp

use DynamicSparsityPattern in step-17

8 years agoMerge pull request #2893 from tjhei/fix_locally_owned_dofs_per_subdomain
Wolfgang Bangerth [Mon, 1 Aug 2016 13:39:10 +0000 (08:39 -0500)]
Merge pull request #2893 from tjhei/fix_locally_owned_dofs_per_subdomain

Fix locally_owned_dofs_per_subdomain

8 years agoMerge pull request #2892 from tjhei/dsp_documentation
David Wells [Mon, 1 Aug 2016 13:34:25 +0000 (09:34 -0400)]
Merge pull request #2892 from tjhei/dsp_documentation

add some documentation

8 years agoMerge pull request #2903 from jgedicke/fix_clang_error
Martin Kronbichler [Mon, 1 Aug 2016 12:39:26 +0000 (14:39 +0200)]
Merge pull request #2903 from jgedicke/fix_clang_error

fix clang error

8 years agoaddress comments 2894/head
Timo Heister [Mon, 1 Aug 2016 09:44:24 +0000 (11:44 +0200)]
address comments

8 years agoadd some documentation 2892/head
Timo Heister [Sun, 31 Jul 2016 13:51:17 +0000 (15:51 +0200)]
add some documentation

8 years agocomment, add Assert 2893/head
Timo Heister [Mon, 1 Aug 2016 09:32:20 +0000 (11:32 +0200)]
comment, add Assert

8 years agofix clang error 2903/head
Joscha Gedicke [Mon, 1 Aug 2016 08:45:38 +0000 (10:45 +0200)]
fix clang error

8 years agoFix locally_owned_dofs_per_subdomain
Timo Heister [Sun, 31 Jul 2016 13:27:21 +0000 (15:27 +0200)]
Fix locally_owned_dofs_per_subdomain

DoFTools::locally_owned_dofs_per_subdomain would wrongly trigger an Assertion if running with a dealii::Triangulation (not a shared one) and with more than one MPI rank. This is now fixed.

8 years agoMerge pull request #2871 from jgedicke/arpack
Denis Davydov [Mon, 1 Aug 2016 07:55:56 +0000 (09:55 +0200)]
Merge pull request #2871 from jgedicke/arpack

fix (p)arpack interface for non symmetric matrices

8 years agofix (P)ARPACK interface for non-symmetric matrices 2871/head
Joscha Gedicke [Thu, 21 Jul 2016 13:19:58 +0000 (15:19 +0200)]
fix (P)ARPACK interface for non-symmetric matrices

-> test for length n+1 of the eigenvectors in the non-symmetric case, which is related to the storage scheme of complex components
-> allow ARPACK to store n+1 eigenvalues in the work arrays in case the eigenvalues n and n+1 form a complex conjugate pair
-> copy nev eigenvectors from the work arrays as nev is increased by one by dneupd in some cases
-> add set_initial_vector function
-> add tests for advection-diffusion FE matrices with complex eigenvalues
-> improve description of the tests

8 years agoMerge pull request #2900 from class4kayaker/fix_compile_error
Wolfgang Bangerth [Mon, 1 Aug 2016 02:01:14 +0000 (21:01 -0500)]
Merge pull request #2900 from class4kayaker/fix_compile_error

Fix error generated in removing mem_fun

8 years agoFix error generated in removing mem_fun 2900/head
Jonathan Robey [Sun, 31 Jul 2016 23:58:25 +0000 (16:58 -0700)]
Fix error generated in removing mem_fun

8 years agoMerge pull request #2898 from class4kayaker/elim_mem_fun
Wolfgang Bangerth [Sun, 31 Jul 2016 23:12:40 +0000 (18:12 -0500)]
Merge pull request #2898 from class4kayaker/elim_mem_fun

Eliminate mem_fun, mem_fun_1

8 years agoMerge pull request #2899 from class4kayaker/elim_ptr_fun
Wolfgang Bangerth [Sun, 31 Jul 2016 23:11:26 +0000 (18:11 -0500)]
Merge pull request #2899 from class4kayaker/elim_ptr_fun

Eliminate ptr_fun from tests

8 years agoEliminate ptr_fun from tests 2899/head
Jonathan Robey [Sun, 31 Jul 2016 23:03:26 +0000 (16:03 -0700)]
Eliminate ptr_fun from tests

8 years agoEliminate mem_fun in include 2898/head
Jonathan Robey [Sun, 31 Jul 2016 22:40:50 +0000 (15:40 -0700)]
Eliminate mem_fun in include

Replace with std_cxx11::bind

8 years agoEliminate mem_fun in source
Jonathan Robey [Sun, 31 Jul 2016 22:37:11 +0000 (15:37 -0700)]
Eliminate mem_fun in source

Replace with std_cxx11::bind

8 years agoMerge pull request #2884 from class4kayaker/elim_bind2nd
Wolfgang Bangerth [Sun, 31 Jul 2016 21:45:12 +0000 (16:45 -0500)]
Merge pull request #2884 from class4kayaker/elim_bind2nd

Eliminate bind2nd

8 years agouse DynamicSparsityPattern in step-17
Timo Heister [Sun, 31 Jul 2016 13:47:14 +0000 (15:47 +0200)]
use DynamicSparsityPattern in step-17

8 years agoMerge pull request #2888 from kronbichler/master
Martin Kronbichler [Sun, 31 Jul 2016 07:35:52 +0000 (09:35 +0200)]
Merge pull request #2888 from kronbichler/master

Fix print functions of Trilinos sparsity pattern


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