]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
2 years agoMerge pull request #13483 from tjhei/mpi3-followup
Wolfgang Bangerth [Thu, 3 Mar 2022 00:03:47 +0000 (17:03 -0700)]
Merge pull request #13483 from tjhei/mpi3-followup

MPI 3: minor edits

2 years agoMerge pull request #13482 from masterleinad/deprecate_utilities_mpi_create_group
Marc Fehling [Wed, 2 Mar 2022 22:06:01 +0000 (15:06 -0700)]
Merge pull request #13482 from masterleinad/deprecate_utilities_mpi_create_group

Deprecate Utilities::MPI::create_group

2 years agoMPI 3: minor edits 13483/head
Timo Heister [Wed, 2 Mar 2022 18:45:20 +0000 (13:45 -0500)]
MPI 3: minor edits

2 years agoDeprecate Utilities::MPI::create_group 13482/head
Daniel Arndt [Wed, 2 Mar 2022 16:08:55 +0000 (11:08 -0500)]
Deprecate Utilities::MPI::create_group

2 years agoMerge pull request #13465 from pengfej/fbranch
Timo Heister [Wed, 2 Mar 2022 18:42:14 +0000 (13:42 -0500)]
Merge pull request #13465 from pengfej/fbranch

Remove MPI 2.x logic

2 years agoRemove DEAL_II_MPI_VERSION_GTE 13465/head
Pengfei Jia [Mon, 28 Feb 2022 21:53:37 +0000 (16:53 -0500)]
Remove DEAL_II_MPI_VERSION_GTE

An update on Issue #13447: Remove MPI 2.X logic

fix some mistakes

indent

adding back some comments

recovering line 616-629

adding back line 447-508

Changing back step 76

2 years agoMerge pull request #13476 from bangerth/warning
Marc Fehling [Wed, 2 Mar 2022 02:41:02 +0000 (19:41 -0700)]
Merge pull request #13476 from bangerth/warning

Avoid integer comparison warning.

2 years agoMerge pull request #13470 from bangerth/test-2
Marc Fehling [Wed, 2 Mar 2022 02:40:18 +0000 (19:40 -0700)]
Merge pull request #13470 from bangerth/test-2

Check MPI error codes.

2 years agoAvoid integer comparison warning. 13476/head
Wolfgang Bangerth [Tue, 1 Mar 2022 23:38:40 +0000 (16:38 -0700)]
Avoid integer comparison warning.

2 years agoCheck MPI error codes. 13470/head
Wolfgang Bangerth [Tue, 1 Mar 2022 17:58:18 +0000 (10:58 -0700)]
Check MPI error codes.

2 years agoMerge pull request #13445 from bangerth/error
Martin Kronbichler [Tue, 1 Mar 2022 08:19:37 +0000 (09:19 +0100)]
Merge pull request #13445 from bangerth/error

Error out with too large Trilinos sparsity patterns.

2 years agoMerge pull request #13463 from bangerth/doc-13
Martin Kronbichler [Tue, 1 Mar 2022 08:13:35 +0000 (09:13 +0100)]
Merge pull request #13463 from bangerth/doc-13

Minor update to FE_Nedelec.

2 years agoMerge pull request #13452 from bangerth/error-2
Martin Kronbichler [Tue, 1 Mar 2022 08:12:58 +0000 (09:12 +0100)]
Merge pull request #13452 from bangerth/error-2

Provide a second error for Trilinos sparsity pattern problems.

2 years agoMerge pull request #13394 from Rombur/arborx_distributed_tree
Luca Heltai [Tue, 1 Mar 2022 07:50:07 +0000 (10:50 +0300)]
Merge pull request #13394 from Rombur/arborx_distributed_tree

Add ArborXWrappers::DistributedTree

2 years agoMerge pull request #13466 from drwells/tbb-quick-test
Marc Fehling [Tue, 1 Mar 2022 02:49:19 +0000 (19:49 -0700)]
Merge pull request #13466 from drwells/tbb-quick-test

Fix the TBB quick test.

2 years agoFix the TBB quick test. 13466/head
David Wells [Mon, 28 Feb 2022 22:33:08 +0000 (17:33 -0500)]
Fix the TBB quick test.

This should work with or without oneAPI.

2 years agoAdd DEAL_II_ARBORX_WITH_MPI=1 in options.dox.in 13394/head
Bruno Turcksin [Mon, 28 Feb 2022 22:08:01 +0000 (22:08 +0000)]
Add DEAL_II_ARBORX_WITH_MPI=1 in options.dox.in

2 years agoMerge pull request #13462 from tjhei/changelog2
Matthias Maier [Mon, 28 Feb 2022 20:02:07 +0000 (14:02 -0600)]
Merge pull request #13462 from tjhei/changelog2

add changelog entry

2 years agoMerge pull request #13464 from tjhei/mpi3_doc
Matthias Maier [Mon, 28 Feb 2022 20:01:29 +0000 (14:01 -0600)]
Merge pull request #13464 from tjhei/mpi3_doc

documentation: MPI 3.0 minimum

2 years agodocumentation: MPI 3.0 minimum 13464/head
Timo Heister [Mon, 28 Feb 2022 18:35:21 +0000 (13:35 -0500)]
documentation: MPI 3.0 minimum

2 years agoMinor update to FE_Nedelec. 13463/head
Wolfgang Bangerth [Mon, 28 Feb 2022 18:25:24 +0000 (11:25 -0700)]
Minor update to FE_Nedelec.

2 years agoProvide a second error for Trilinos sparsity pattern problems. 13452/head
Wolfgang Bangerth [Fri, 25 Feb 2022 21:31:08 +0000 (14:31 -0700)]
Provide a second error for Trilinos sparsity pattern problems.

2 years agoMerge pull request #13446 from pengfej/fbranch
Wolfgang Bangerth [Mon, 28 Feb 2022 18:16:58 +0000 (11:16 -0700)]
Merge pull request #13446 from pengfej/fbranch

Simplify MPI IO in parallel vtu output

2 years agoadd changelog entry 13462/head
Timo Heister [Mon, 28 Feb 2022 18:01:07 +0000 (13:01 -0500)]
add changelog entry

2 years agoMerge pull request #13461 from tamiko/require_mpi_3
Timo Heister [Mon, 28 Feb 2022 17:58:14 +0000 (12:58 -0500)]
Merge pull request #13461 from tamiko/require_mpi_3

CMake: require MPI 3.0

2 years agoMerge pull request #13427 from harmonj/FE_NEDELEC_DOC
Daniel Arndt [Mon, 28 Feb 2022 15:13:10 +0000 (10:13 -0500)]
Merge pull request #13427 from harmonj/FE_NEDELEC_DOC

2 years agoCMake: require MPI 3.0 13461/head
Matthias Maier [Mon, 28 Feb 2022 11:03:29 +0000 (05:03 -0600)]
CMake: require MPI 3.0

2 years agoMerge pull request #13459 from peterrum/test_fix_compute_diagonal
Wolfgang Bangerth [Mon, 28 Feb 2022 00:48:08 +0000 (17:48 -0700)]
Merge pull request #13459 from peterrum/test_fix_compute_diagonal

Fix GC tests

2 years agoFix GC tests 13459/head
Peter Munch [Sun, 27 Feb 2022 20:31:46 +0000 (21:31 +0100)]
Fix GC tests

2 years agoAdd shape function illustrations for FE_Nedelec 13427/head
Jake Harmon [Mon, 21 Feb 2022 02:32:42 +0000 (19:32 -0700)]
Add shape function illustrations for FE_Nedelec

2 years agoMerge pull request #13455 from tjhei/add_test
Marc Fehling [Sun, 27 Feb 2022 00:51:48 +0000 (17:51 -0700)]
Merge pull request #13455 from tjhei/add_test

add test for invert_cells_with_negative_measure

2 years agoMerge pull request #13442 from bangerth/comments
Marc Fehling [Sat, 26 Feb 2022 23:16:07 +0000 (16:16 -0700)]
Merge pull request #13442 from bangerth/comments

Minor updates to ARKode in-code commentary.

2 years agoadd test for invert_cells_with_negative_measure 13455/head
Timo Heister [Sat, 26 Feb 2022 22:26:48 +0000 (17:26 -0500)]
add test for invert_cells_with_negative_measure

2 years agoMerge pull request #13454 from tjhei/changelog
Wolfgang Bangerth [Sat, 26 Feb 2022 21:28:09 +0000 (14:28 -0700)]
Merge pull request #13454 from tjhei/changelog

add changelog for gmsh inverted cell fix

2 years agoadd changelog for gmsh inverted cell fix 13454/head
Timo Heister [Sat, 26 Feb 2022 19:59:05 +0000 (14:59 -0500)]
add changelog for gmsh inverted cell fix

2 years agoMerge pull request #13444 from singima/grid_edits_alt
Timo Heister [Sat, 26 Feb 2022 17:57:45 +0000 (12:57 -0500)]
Merge pull request #13444 from singima/grid_edits_alt

Allow loading Gmsh files with some cells inverted

2 years agoMerge pull request #13453 from bangerth/warning
Marc Fehling [Sat, 26 Feb 2022 05:10:49 +0000 (22:10 -0700)]
Merge pull request #13453 from bangerth/warning

Avoid a warning about comparison of differently sized integers.

2 years agoAvoid a warning about comparison of differently sized integers. 13453/head
Wolfgang Bangerth [Sat, 26 Feb 2022 03:28:51 +0000 (20:28 -0700)]
Avoid a warning about comparison of differently sized integers.

2 years agoMerge pull request #13448 from bangerth/assertion
Marc Fehling [Sat, 26 Feb 2022 02:02:08 +0000 (19:02 -0700)]
Merge pull request #13448 from bangerth/assertion

Add an assertion for p4est weights.

2 years agoMerge pull request #13449 from marcfehling/zorder-weight
Wolfgang Bangerth [Fri, 25 Feb 2022 23:45:57 +0000 (16:45 -0700)]
Merge pull request #13449 from marcfehling/zorder-weight

cell_weight: not implemented for partition_zorder

2 years agoMerge pull request #13450 from zjiaqi2018/fix-instantiation
Wolfgang Bangerth [Fri, 25 Feb 2022 23:45:27 +0000 (16:45 -0700)]
Merge pull request #13450 from zjiaqi2018/fix-instantiation

Fix instantiation for add_entries_local_to_global

2 years agoUpdate source/distributed/tria.cc 13448/head
Wolfgang Bangerth [Fri, 25 Feb 2022 21:56:40 +0000 (14:56 -0700)]
Update source/distributed/tria.cc

Co-authored-by: Marc Fehling <mafehling.git@gmail.com>
2 years agocell_weight: not implemented for partition_zorder 13449/head
Marc Fehling [Fri, 25 Feb 2022 19:12:12 +0000 (12:12 -0700)]
cell_weight: not implemented for partition_zorder

2 years agoinstantiation for add_entries_local_to_global 13450/head
Jiaqi Zhang [Fri, 25 Feb 2022 19:21:34 +0000 (13:21 -0600)]
instantiation for add_entries_local_to_global

2 years agoError out with too large Trilinos sparsity patterns. 13445/head
Wolfgang Bangerth [Thu, 24 Feb 2022 22:26:13 +0000 (15:26 -0700)]
Error out with too large Trilinos sparsity patterns.

2 years agoRemove unnecessary codes 13446/head
Pengfei Jia [Fri, 25 Feb 2022 01:21:01 +0000 (20:21 -0500)]
Remove unnecessary codes

Correct indent; Adding descriptions

2 years agotest fix 13444/head
Sean Ingimarson [Fri, 25 Feb 2022 18:18:46 +0000 (13:18 -0500)]
test fix

2 years agoAllow loading Gmsh files with some cells inverted
Sean Ingimarson [Mon, 14 Feb 2022 16:44:54 +0000 (11:44 -0500)]
Allow loading Gmsh files with some cells inverted

doc fix

2 years agoAdd an assertion for p4est weights.
Wolfgang Bangerth [Fri, 25 Feb 2022 18:14:59 +0000 (11:14 -0700)]
Add an assertion for p4est weights.

2 years agoMerge pull request #13443 from peterrum/compute_diagonal_assert
Peter Munch [Fri, 25 Feb 2022 07:37:40 +0000 (08:37 +0100)]
Merge pull request #13443 from peterrum/compute_diagonal_assert

Add assert to MFTools::compute_diagonal()

2 years agoAdd assert to MFTools::compute_diagonal() 13443/head
Peter Munch [Thu, 24 Feb 2022 08:28:22 +0000 (09:28 +0100)]
Add assert to MFTools::compute_diagonal()

2 years agoMerge pull request #13416 from luca-heltai/fix-non-matching-coupling
Martin Kronbichler [Thu, 24 Feb 2022 07:53:46 +0000 (08:53 +0100)]
Merge pull request #13416 from luca-heltai/fix-non-matching-coupling

Fix non matching coupling

2 years agoMerge pull request #13436 from bangerth/arkode
Martin Kronbichler [Thu, 24 Feb 2022 07:41:50 +0000 (08:41 +0100)]
Merge pull request #13436 from bangerth/arkode

Move a couple of functions out of line.

2 years agoMinor updates to ARKode in-code commentary. 13442/head
Wolfgang Bangerth [Thu, 24 Feb 2022 04:30:37 +0000 (21:30 -0700)]
Minor updates to ARKode in-code commentary.

2 years agoMove a couple of functions out of line. 13436/head
Wolfgang Bangerth [Tue, 22 Feb 2022 16:20:43 +0000 (09:20 -0700)]
Move a couple of functions out of line.

2 years agoMerge pull request #13441 from kronbichler/fix_step75
Peter Munch [Wed, 23 Feb 2022 20:33:21 +0000 (21:33 +0100)]
Merge pull request #13441 from kronbichler/fix_step75

Fix run time error in step-75: initialize diagonal vector

2 years agoMerge pull request #13439 from tamiko/declare_as_constexpr
Wolfgang Bangerth [Wed, 23 Feb 2022 17:35:41 +0000 (10:35 -0700)]
Merge pull request #13439 from tamiko/declare_as_constexpr

Declare a number of static consts as constexpr

2 years agoFix run time error in step-75. 13441/head
Martin Kronbichler [Wed, 23 Feb 2022 16:03:37 +0000 (17:03 +0100)]
Fix run time error in step-75.

2 years agoDeclare a number of static consts as constexpr 13439/head
Matthias Maier [Wed, 23 Feb 2022 13:12:41 +0000 (07:12 -0600)]
Declare a number of static consts as constexpr

By changing the underlying type from `static const` to
`static constexpr` it is possible to use these dimension constants also
in template expressions.

2 years agoMerge pull request #13434 from peterrum/copy_triangulation_fix
Marc Fehling [Tue, 22 Feb 2022 22:07:32 +0000 (15:07 -0700)]
Merge pull request #13434 from peterrum/copy_triangulation_fix

Fix p:d:T::copy_triangulation()

2 years agoMerge pull request #13433 from rezarastak/vertex_dof_accessor_test
Daniel Arndt [Tue, 22 Feb 2022 20:35:37 +0000 (15:35 -0500)]
Merge pull request #13433 from rezarastak/vertex_dof_accessor_test

2 years agoMerge pull request #13432 from nfehn/tensor_kernels
Daniel Arndt [Tue, 22 Feb 2022 20:35:12 +0000 (15:35 -0500)]
Merge pull request #13432 from nfehn/tensor_kernels

2 years agoMerge pull request #13435 from luca-heltai/minor-fix-parsed-convergence-table
Marc Fehling [Tue, 22 Feb 2022 17:57:08 +0000 (10:57 -0700)]
Merge pull request #13435 from luca-heltai/minor-fix-parsed-convergence-table

Fixed ParsedConvergenceTable::difference()

2 years agoMerge pull request #13422 from kronbichler/remove_unneeded_headers
Wolfgang Bangerth [Tue, 22 Feb 2022 15:51:12 +0000 (08:51 -0700)]
Merge pull request #13422 from kronbichler/remove_unneeded_headers

Remove some unnecessary includes of grid_tools.h

2 years agoMerge pull request #13430 from peterrum/assert_get_fe_index
Wolfgang Bangerth [Tue, 22 Feb 2022 15:49:06 +0000 (08:49 -0700)]
Merge pull request #13430 from peterrum/assert_get_fe_index

Improve assert message for invalid FE indices in DoFAccessor

2 years agoNew DoFAccessor test added for vertex dofs 13433/head
Reza Rastak [Tue, 22 Feb 2022 11:43:31 +0000 (11:43 +0000)]
New DoFAccessor test added for vertex dofs

2 years agoFixed ParsedConvergenceTable::difference() 13435/head
Luca Heltai [Tue, 22 Feb 2022 15:38:02 +0000 (15:38 +0000)]
Fixed ParsedConvergenceTable::difference()

2 years agofix bug 13432/head
Niklas Fehn [Tue, 22 Feb 2022 15:32:41 +0000 (16:32 +0100)]
fix bug

2 years agoFix p:d:T::copy_triangulation() 13434/head
Peter Munch [Tue, 22 Feb 2022 13:46:26 +0000 (14:46 +0100)]
Fix p:d:T::copy_triangulation()

2 years agoMerge pull request #13429 from peterrum/present_index
Martin Kronbichler [Tue, 22 Feb 2022 12:35:41 +0000 (13:35 +0100)]
Merge pull request #13429 from peterrum/present_index

Replace present_index by index() in DoFAccessor

2 years agoapply changes to all occurrences in tensor_product_kernels.h
Niklas Fehn [Tue, 22 Feb 2022 12:27:18 +0000 (13:27 +0100)]
apply changes to all occurrences in tensor_product_kernels.h

2 years agoAdd changelog entry 13422/head
Martin Kronbichler [Tue, 22 Feb 2022 11:09:25 +0000 (12:09 +0100)]
Add changelog entry

2 years agochange logic in tensor product kernels to positive statements
Niklas Fehn [Tue, 22 Feb 2022 10:35:05 +0000 (11:35 +0100)]
change logic in tensor product kernels to positive statements

2 years agoImprove assert message for invalid FE indices in DoFAccessor 13430/head
Peter Munch [Mon, 21 Feb 2022 10:20:36 +0000 (11:20 +0100)]
Improve assert message for invalid FE indices in DoFAccessor

2 years agoMerge pull request #13431 from gfcas/fix_doc_typo
Daniel Arndt [Mon, 21 Feb 2022 18:59:58 +0000 (13:59 -0500)]
Merge pull request #13431 from gfcas/fix_doc_typo

2 years agoFix indent-all header typo 13431/head
Fabian Castelli [Mon, 21 Feb 2022 18:45:01 +0000 (19:45 +0100)]
Fix indent-all header typo

2 years agoMore adaptations to include files
Martin Kronbichler [Mon, 21 Feb 2022 15:54:27 +0000 (16:54 +0100)]
More adaptations to include files

2 years agoMerge pull request #13420 from peterrum/check_vector_compatibility_assert
Peter Munch [Mon, 21 Feb 2022 16:53:16 +0000 (17:53 +0100)]
Merge pull request #13420 from peterrum/check_vector_compatibility_assert

FEEval::check_vector_compatibility: improve assert message

2 years agoMerge pull request #13424 from tamiko/performance_tests_06
Matthias Maier [Mon, 21 Feb 2022 15:55:28 +0000 (09:55 -0600)]
Merge pull request #13424 from tamiko/performance_tests_06

Performance tests: some more polishing

2 years agoRun timing step 37 exclusively as well 13424/head
Matthias Maier [Mon, 21 Feb 2022 11:02:39 +0000 (05:02 -0600)]
Run timing step 37 exclusively as well

2 years agoUpdate doc/developers/testsuite.html
Matthias Maier [Mon, 21 Feb 2022 10:59:00 +0000 (04:59 -0600)]
Update doc/developers/testsuite.html

Co-authored-by: Luca Heltai <luca.heltai@sissa.it>
2 years agoPerformance tests: run serial timing tests exclusively
Matthias Maier [Sun, 20 Feb 2022 17:36:03 +0000 (11:36 -0600)]
Performance tests: run serial timing tests exclusively

2 years agoUpdate documentation
Matthias Maier [Sun, 20 Feb 2022 17:32:06 +0000 (11:32 -0600)]
Update documentation

2 years agoCMake: add a .exclusive. toggle to ensure that certain tests run in serial
Matthias Maier [Sun, 20 Feb 2022 17:00:23 +0000 (11:00 -0600)]
CMake: add a .exclusive. toggle to ensure that certain tests run in serial

2 years agoPerformance tests: limit concurrency of tests
Matthias Maier [Sun, 20 Feb 2022 16:47:11 +0000 (10:47 -0600)]
Performance tests: limit concurrency of tests

Our usual strategy of limiting test concurrency by attributing a
workload of "mpi ranks / 2" to a test that uses mpirun doesn't really
work in case of performance tests where the underlying machine should
not be overcommitted.

2 years agoReplace present_index by index() in DoFAccessor 13429/head
Peter Munch [Mon, 21 Feb 2022 09:30:59 +0000 (10:30 +0100)]
Replace present_index by index() in DoFAccessor

2 years agoFEEval::check_vector_compatibility: improve assert message 13420/head
Peter Munch [Fri, 18 Feb 2022 22:36:51 +0000 (23:36 +0100)]
FEEval::check_vector_compatibility: improve assert message

2 years agoMerge pull request #13425 from lethe-cfd/add_erf_mu_parser
Marc Fehling [Mon, 21 Feb 2022 01:31:47 +0000 (18:31 -0700)]
Merge pull request #13425 from lethe-cfd/add_erf_mu_parser

Add erf function to deal.II muparser functions

2 years agoMerge pull request #13426 from tamiko/master
Marc Fehling [Mon, 21 Feb 2022 01:30:56 +0000 (18:30 -0700)]
Merge pull request #13426 from tamiko/master

CMake: Fix typo

2 years agoCMake: Fix typo 13426/head
Matthias Maier [Sun, 20 Feb 2022 22:57:42 +0000 (16:57 -0600)]
CMake: Fix typo

2 years agoMerge pull request #13421 from luca-heltai/fix-gmsh
Matthias Maier [Sun, 20 Feb 2022 22:52:07 +0000 (16:52 -0600)]
Merge pull request #13421 from luca-heltai/fix-gmsh

Fixed bug in gmsh api.

2 years agoMerge pull request #13423 from tamiko/performance_tests_05
Matthias Maier [Sun, 20 Feb 2022 20:59:58 +0000 (14:59 -0600)]
Merge pull request #13423 from tamiko/performance_tests_05

Bugfix: adjust collect_measurements to new directory layout

2 years agoAdd include file missing after re-structuring
Martin Kronbichler [Sun, 20 Feb 2022 17:11:37 +0000 (18:11 +0100)]
Add include file missing after re-structuring

2 years agoAdd erf to muparser 13425/head
Bruno Blais [Sun, 20 Feb 2022 17:46:05 +0000 (12:46 -0500)]
Add erf to muparser

2 years agoRemove some more appearances
Martin Kronbichler [Sun, 20 Feb 2022 16:35:01 +0000 (17:35 +0100)]
Remove some more appearances

2 years agoBugfix: adjust collect_measurements to new directory layout 13423/head
Matthias Maier [Sun, 20 Feb 2022 16:28:07 +0000 (10:28 -0600)]
Bugfix: adjust collect_measurements to new directory layout

2 years agoRemove some unnecessary includes of grid_tools.h
Martin Kronbichler [Sun, 20 Feb 2022 16:22:55 +0000 (17:22 +0100)]
Remove some unnecessary includes of grid_tools.h

2 years agoFixed bug in gmsh api. 13421/head
Luca Heltai [Sun, 20 Feb 2022 08:40:15 +0000 (08:40 +0000)]
Fixed bug in gmsh api.

2 years agoFixed NonMatching::create_coupling_* when constraints are present. 13416/head
Luca Heltai [Fri, 18 Feb 2022 09:44:01 +0000 (09:44 +0000)]
Fixed NonMatching::create_coupling_* when constraints are present.

2 years agoMerge pull request #13415 from luca-heltai/fix-rectangular-sparsity
Peter Munch [Sat, 19 Feb 2022 06:43:42 +0000 (07:43 +0100)]
Merge pull request #13415 from luca-heltai/fix-rectangular-sparsity

Another rectangular version of add_entries_local_to_global()


In the beginning the Universe was created. This has made a lot of people very angry and has been widely regarded as a bad move.

Douglas Adams


Typeset in Trocchi and Trocchi Bold Sans Serif.