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https://gitweb.dealii.org/ - dealii.git/log
Winnifried Wollner [Fri, 28 Feb 2020 16:24:47 +0000 (17:24 +0100)]
Fix for Issue 8974
Winnifried Wollner [Fri, 28 Feb 2020 09:26:44 +0000 (10:26 +0100)]
New Test-Case for Curl-Conforming BV and FESystem
Matthias Maier [Thu, 27 Feb 2020 02:08:13 +0000 (20:08 -0600)]
Merge pull request #9570 from tjhei/fix_tutorial_inline_comments
doxygen: do not remove multiline code comments
Timo Heister [Wed, 26 Feb 2020 19:06:56 +0000 (14:06 -0500)]
doxygen: do not remove multiline code comments
Code in tutorials that contains multiline comments like
/*keep_constrained_dofs = */ false
were being replaced by
/ *keep_constrained_dofs = * / false
I don't see why this is necessary. The documentation looks correct to
me.
fixes #9554
Wolfgang Bangerth [Wed, 26 Feb 2020 18:16:00 +0000 (19:16 +0100)]
Merge pull request #9569 from tjhei/doxygen_skip_header_step_b
doxygen: skip license header in step-xxb
Timo Heister [Wed, 26 Feb 2020 15:54:46 +0000 (10:54 -0500)]
doxygen: skip license header in step-xxb
We introduced tutorials like step-12b but we incorrectly print the
license header at the beginning of the "commented program". Filter those
out as well.
Wolfgang Bangerth [Wed, 26 Feb 2020 15:24:28 +0000 (16:24 +0100)]
Merge pull request #9568 from tjhei/64bit_refinement
fix 64bit overflow in refine_and_coarsen_fixed_number
Timo Heister [Wed, 26 Feb 2020 13:13:52 +0000 (08:13 -0500)]
fix 64bit overflow in refine_and_coarsen_fixed_number
The argument max_n_cells (that probably nobody uses) was declared as an
unsigned int, meaning that we can not refine over 4 billion cells with
this function. This is now fixed.
Timo Heister [Tue, 25 Feb 2020 21:29:33 +0000 (16:29 -0500)]
Merge pull request #9564 from kronbichler/fe_evaluation_assert_test
Make assertions to track state in FEEvaluation debug-only
Martin Kronbichler [Tue, 25 Feb 2020 20:27:38 +0000 (21:27 +0100)]
Merge pull request #9559 from bangerth/doc
Update documentation of SphericalManifold::normal_vector.
Martin Kronbichler [Tue, 25 Feb 2020 18:34:20 +0000 (19:34 +0100)]
Make assertions to track state in FEEvaluation debug-only
Wolfgang Bangerth [Mon, 24 Feb 2020 17:52:05 +0000 (10:52 -0700)]
Update documentation of SphericalManifold::normal_vector.
David Wells [Tue, 25 Feb 2020 00:29:14 +0000 (19:29 -0500)]
Merge pull request #9539 from masterleinad/replace_assert_in_tests
Redefine Assert as AssertThrow in tests
David Wells [Tue, 25 Feb 2020 00:28:55 +0000 (19:28 -0500)]
Merge pull request #9561 from bangerth/endl
Avoid using std::endl over '\n'.
Daniel Arndt [Mon, 24 Feb 2020 22:42:27 +0000 (17:42 -0500)]
Merge pull request #9526 from agrayver/add_step_49_python
Add python version of step-49
Wolfgang Bangerth [Mon, 24 Feb 2020 21:59:08 +0000 (14:59 -0700)]
Avoid using std::endl over '\n'.
std::endl writes an endline character into the stream, but then follows
that up with a flush(). That's expensive on remote-mounted file systems,
and most unnecessary as well -- we should really just write the endline
character and put a flush() at the very end of the operation.
Alexander Grayver [Wed, 12 Feb 2020 20:50:59 +0000 (21:50 +0100)]
Add python version of step-49
Wolfgang Bangerth [Thu, 20 Feb 2020 16:30:00 +0000 (17:30 +0100)]
Merge pull request #9555 from marcfehling/test-hpconstraints
New test: p::d::tria + hp::dofh + hanging_node_constraints.
Marc Fehling [Thu, 20 Feb 2020 12:50:05 +0000 (13:50 +0100)]
New test: p::d::tria + hp::dofh + hanging_node_constraints.
Martin Kronbichler [Thu, 20 Feb 2020 07:11:08 +0000 (08:11 +0100)]
Merge pull request #9551 from masterleinad/add_split_by_block
Slight improvements to #9529
Wolfgang Bangerth [Thu, 20 Feb 2020 01:51:46 +0000 (02:51 +0100)]
Merge pull request #9548 from tjhei/64bit_n_global_active_cells
Fix 64bit GridRefinement overflow
Timo Heister [Wed, 19 Feb 2020 13:47:51 +0000 (08:47 -0500)]
Fix 64bit GridRefinement overflow
GridRefinement::refine_and_coarsen_fixed_fraction causes overflow with
more than 2^32 global active cells. This is now fixed.
Wolfgang Bangerth [Wed, 19 Feb 2020 20:22:18 +0000 (21:22 +0100)]
Merge pull request #9553 from GrahamBenHarper/graham_step51_typofix
Fix a typo in step-51 files
grahambenharper [Wed, 19 Feb 2020 19:00:12 +0000 (12:00 -0700)]
Fix a typo in step-51 files
Daniel Arndt [Wed, 19 Feb 2020 16:40:08 +0000 (11:40 -0500)]
Slight improvements to #9529
Daniel Arndt [Wed, 19 Feb 2020 16:12:08 +0000 (11:12 -0500)]
Merge pull request #9529 from KatrinMang/add_split_by_block
Add split_by_block() into IndexSet
Katrin Mang [Fri, 14 Feb 2020 15:46:28 +0000 (16:46 +0100)]
add split_by_block into index_set
Daniel Arndt [Tue, 18 Feb 2020 04:26:23 +0000 (23:26 -0500)]
Add comments describing the redefinition
Timo Heister [Mon, 17 Feb 2020 21:54:31 +0000 (16:54 -0500)]
Merge pull request #9543 from GrahamBenHarper/graham_dev_dox2
Fix use of array concatenation in checkdoxygen.py
Daniel Arndt [Mon, 17 Feb 2020 19:52:13 +0000 (14:52 -0500)]
Include tests.h before any other local file
Daniel Arndt [Mon, 17 Feb 2020 19:30:40 +0000 (14:30 -0500)]
Change priority of tests.h for clang-format
grahambenharper [Mon, 17 Feb 2020 19:22:44 +0000 (12:22 -0700)]
Fix use of array concatenation
Timo Heister [Mon, 17 Feb 2020 18:51:55 +0000 (13:51 -0500)]
Merge pull request #9505 from GrahamBenHarper/graham_dev_dox
Upgrade checkdoxygen.py to check for multiple-defined section headers
grahambenharper [Mon, 10 Feb 2020 17:09:29 +0000 (10:09 -0700)]
Upgrade checkdoxygen.py to check for multiple-defined headers
Martin Kronbichler [Mon, 17 Feb 2020 10:10:25 +0000 (11:10 +0100)]
Merge pull request #9540 from tjhei/64bit_n_global_active_cells
Fix overflow in tria.n_global_active_cells()
Timo Heister [Mon, 17 Feb 2020 04:10:10 +0000 (23:10 -0500)]
Fix overflow in tria.n_global_active_cells()
for large computations.
Daniel Arndt [Sun, 16 Feb 2020 04:10:10 +0000 (23:10 -0500)]
Redefine Assert as AssertThrow in tests
David Wells [Sat, 15 Feb 2020 16:03:21 +0000 (08:03 -0800)]
Merge pull request #9533 from tjhei/assert_throw_lapack
Use AssertThrow when LAPACK or other dependencies are not installed
Martin Kronbichler [Sat, 15 Feb 2020 14:52:32 +0000 (15:52 +0100)]
Merge pull request #9534 from tjhei/mg_tansfer_64bit_but_not_really_a_bug
Use a 64bit type in one other MGTransfer location
Timo Heister [Sat, 15 Feb 2020 14:12:24 +0000 (09:12 -0500)]
Merge pull request #9536 from bangerth/nonlocal
Avoid nonlocal control flow since it's so hard to read.
Martin Kronbichler [Sat, 15 Feb 2020 06:20:55 +0000 (07:20 +0100)]
Merge pull request #9537 from bangerth/pedantic
Be pedantic in how we spell deal.II.
Wolfgang Bangerth [Sat, 15 Feb 2020 05:58:18 +0000 (22:58 -0700)]
Use better markup when talking about header files.
Wolfgang Bangerth [Sat, 15 Feb 2020 05:56:54 +0000 (22:56 -0700)]
Be pedantic in how we spell deal.II.
Wolfgang Bangerth [Sat, 15 Feb 2020 05:28:16 +0000 (22:28 -0700)]
Avoid nonlocal control flow since it's so hard to read.
Timo Heister [Sat, 15 Feb 2020 05:26:35 +0000 (00:26 -0500)]
find other places to AssertThrow for missing dependencies
Timo Heister [Sat, 15 Feb 2020 05:07:50 +0000 (00:07 -0500)]
Merge pull request #9531 from bangerth/refs
Move the step-71 -> step-47 references in references.bib.
Daniel Arndt [Sat, 15 Feb 2020 05:00:20 +0000 (00:00 -0500)]
Merge pull request #9532 from tjhei/examples_no_h2
do not use <h2> tag in tutorials
Timo Heister [Sat, 15 Feb 2020 04:55:22 +0000 (23:55 -0500)]
Use a 64bit type in one other MGTransfer location
This is a local index (how manyth index) and as such likely under 4
billion. I found it harder to assert or document why this cast makes
sense, so I rather change the type.
Timo Heister [Sat, 15 Feb 2020 04:42:27 +0000 (23:42 -0500)]
Use AssertThrow when no LAPACK is installed
This bit me on a run in release mode on a cluster today, because my
deal.II didn't have a working LAPACK.
Timo Heister [Sat, 15 Feb 2020 04:38:04 +0000 (23:38 -0500)]
do not use <h2> tag in tutorials
I am not quite sure why, but they don't show up in the table of
contents. We have been avoiding them, but a few tutorials seem to
violate this now.
Wolfgang Bangerth [Sat, 15 Feb 2020 04:30:08 +0000 (21:30 -0700)]
Move the step-71 -> step-47 references in references.bib.
Wolfgang Bangerth [Fri, 14 Feb 2020 17:49:52 +0000 (18:49 +0100)]
Merge pull request #9528 from kronbichler/fix_64bit_type
Use types::global_dof_index rather than unsigned int in MGTransfer
Martin Kronbichler [Fri, 14 Feb 2020 08:31:46 +0000 (09:31 +0100)]
Use types::global_dof_index rather than unsigned int in MGTransfer
Bruno Turcksin [Fri, 14 Feb 2020 02:23:45 +0000 (21:23 -0500)]
Merge pull request #9510 from agrayver/add_python_wrappers
Add more python bindings
David Wells [Fri, 14 Feb 2020 00:19:58 +0000 (16:19 -0800)]
Merge pull request #9527 from GrahamBenHarper/graham_dev_fix_tables
Remove empty lines inside html tables
grahambenharper [Thu, 13 Feb 2020 23:43:00 +0000 (16:43 -0700)]
Remove empty lines inside html tables
Martin Kronbichler [Thu, 13 Feb 2020 07:10:09 +0000 (08:10 +0100)]
Merge pull request #9511 from tamiko/fix_indent_for_old_git
Indent script: Do not use --diff-filter=d
Martin Kronbichler [Thu, 13 Feb 2020 07:04:37 +0000 (08:04 +0100)]
Merge pull request #9522 from bangerth/14
Scale a graphic in the results section of step-14.
Martin Kronbichler [Thu, 13 Feb 2020 07:02:35 +0000 (08:02 +0100)]
Merge pull request #9525 from kronbichler/fill_q_points
Ensure to have valid quadrature point data for all SIMD lanes
Martin Kronbichler [Thu, 13 Feb 2020 07:02:13 +0000 (08:02 +0100)]
Merge pull request #9524 from kronbichler/fix_fe_eval_vector
FEEvaluation: Place exception about no block vector correctly
Martin Kronbichler [Thu, 13 Feb 2020 07:01:24 +0000 (08:01 +0100)]
Merge pull request #9519 from kronbichler/fix_minmaxavg_mpi
Avoid calling into MPI functions with MinMaxAvg in serial
Daniel Arndt [Wed, 12 Feb 2020 19:06:27 +0000 (14:06 -0500)]
Merge pull request #9523 from bangerth/6
Replace eps-generated figure by vtu-generated one in step-6.
Timo Heister [Wed, 12 Feb 2020 18:57:13 +0000 (13:57 -0500)]
Merge pull request #9518 from rezarastak/value_semantics
Use value semantics for const parameters with trivial small types
Alexander Grayver [Wed, 12 Feb 2020 15:32:52 +0000 (16:32 +0100)]
Add python binding for TriaAccessor::centre
Alexander Grayver [Wed, 12 Feb 2020 15:08:50 +0000 (16:08 +0100)]
Add extra CylindricalManifold constructor
Martin Kronbichler [Wed, 12 Feb 2020 14:46:25 +0000 (15:46 +0100)]
Ensure to have valid quadrature point data for all SIMD lanes
Martin Kronbichler [Wed, 12 Feb 2020 14:38:26 +0000 (15:38 +0100)]
FEEvaluation: Place exception about no block vector correctly
Wolfgang Bangerth [Wed, 12 Feb 2020 14:12:13 +0000 (07:12 -0700)]
Replace eps-generated figure by vtu-generated one in step-6.
Wolfgang Bangerth [Wed, 12 Feb 2020 13:54:36 +0000 (06:54 -0700)]
Scale a graphic in the results section of step-14.
Make it the same size as the other images of the solution.
Martin Kronbichler [Wed, 12 Feb 2020 10:20:16 +0000 (11:20 +0100)]
Merge pull request #9493 from bangerth/30
Convert step-30 from using eps/gnuplot to svg/vtu.
Martin Kronbichler [Wed, 12 Feb 2020 10:19:17 +0000 (11:19 +0100)]
Merge pull request #9495 from bangerth/14
Convert step-14 from using eps/gnuplot to svg/vtu.
Martin Kronbichler [Wed, 12 Feb 2020 10:18:27 +0000 (11:18 +0100)]
Merge pull request #9514 from peterrum/write_vtu_with_pvtu_record_comm
Remove MPI_COMM_WORLD as default argument in write_vtu_with_pvtu_record
Martin Kronbichler [Wed, 12 Feb 2020 10:18:03 +0000 (11:18 +0100)]
Merge pull request #9515 from GrahamBenHarper/graham_dev_vec_warnings
Remove some unused variable warnings in vectorization.h
Martin Kronbichler [Wed, 12 Feb 2020 10:17:47 +0000 (11:17 +0100)]
Merge pull request #9516 from marcfehling/bug-weights
parallel::CellWeights: Capture values, not references.
Martin Kronbichler [Wed, 12 Feb 2020 10:13:58 +0000 (11:13 +0100)]
Avoid calling into MPI functions with MinMaxAvg in serial
Reza Rastak [Wed, 12 Feb 2020 08:45:22 +0000 (00:45 -0800)]
Use value semantics for parameters with trivial small types
Alexander Grayver [Tue, 11 Feb 2020 15:41:17 +0000 (16:41 +0100)]
Add more python binds
Wolfgang Bangerth [Tue, 11 Feb 2020 21:07:44 +0000 (22:07 +0100)]
Merge pull request #9451 from sophy1029/step-47
step-47: switch the jump and average in one term of the scheme.
Marc Fehling [Tue, 11 Feb 2020 19:23:34 +0000 (20:23 +0100)]
parallel::CellWeights: Capture values, not references.
grahambenharper [Tue, 11 Feb 2020 18:53:15 +0000 (11:53 -0700)]
Remove some unused variable warnings
Peter Munch [Tue, 11 Feb 2020 17:59:51 +0000 (18:59 +0100)]
Remove MPI_COMM_WORLD as default arguemtn in write_vtu_with_pvtu_record
Wolfgang Bangerth [Tue, 11 Feb 2020 17:53:24 +0000 (18:53 +0100)]
Merge pull request #9474 from GrahamBenHarper/graham_dev_svg_boundaryid
Add boundary id functionality to write_svg
Wolfgang Bangerth [Tue, 11 Feb 2020 17:50:51 +0000 (18:50 +0100)]
Merge pull request #9506 from GrahamBenHarper/graham_dev_clean_tutorials
Update tutorial programs to fix all broken dox links
Wolfgang Bangerth [Tue, 11 Feb 2020 17:50:23 +0000 (18:50 +0100)]
Merge pull request #9512 from kronbichler/fix_muelu_test
Fix MueLu periodicity test
grahambenharper [Mon, 10 Feb 2020 21:59:59 +0000 (14:59 -0700)]
Update tutorial programs to fix broken dox links
Martin Kronbichler [Tue, 11 Feb 2020 17:35:17 +0000 (18:35 +0100)]
Fix MueLu periodicity test
Matthias Maier [Tue, 11 Feb 2020 17:15:44 +0000 (11:15 -0600)]
Indent script: Do not use --diff-filter=d
This hopefully fixes some compatibility issues with ancient git versions
not supporting the --diff-filter option.
Closes #9489
David Wells [Tue, 11 Feb 2020 12:48:19 +0000 (07:48 -0500)]
Merge pull request #9507 from bangerth/6
Minor edit to step-6's results section.
Wolfgang Bangerth [Tue, 11 Feb 2020 04:58:18 +0000 (05:58 +0100)]
Merge pull request #9508 from masterleinad/fix_section_step_45
Fix sections in step-45
Daniel Arndt [Tue, 11 Feb 2020 04:52:42 +0000 (23:52 -0500)]
Merge pull request #9473 from peterrum/minmaxave_vector
Add Utilities::MPI::min_max_avg() for vectors
Daniel Arndt [Tue, 11 Feb 2020 03:18:25 +0000 (22:18 -0500)]
Fix sections in step-45
Wolfgang Bangerth [Tue, 11 Feb 2020 02:57:26 +0000 (19:57 -0700)]
Minor edit to step-6's results section.
Wolfgang Bangerth [Mon, 10 Feb 2020 20:46:12 +0000 (21:46 +0100)]
Merge pull request #9501 from jihuan-tian/jihuan-tian-contrib
Correct the printed message output from ExcInvalidBoundaryFunction()
Timo Heister [Mon, 10 Feb 2020 18:45:45 +0000 (13:45 -0500)]
Merge pull request #9504 from GrahamBenHarper/graham_dev_step61
Fix header names in step-61
grahambenharper [Mon, 10 Feb 2020 17:12:39 +0000 (10:12 -0700)]
Fix header names in step-61
Timo Heister [Mon, 10 Feb 2020 16:19:51 +0000 (11:19 -0500)]
Merge pull request #9503 from masterleinad/create_separate_artifacts
Create separate artifacts in GitHub workflows
Daniel Arndt [Mon, 10 Feb 2020 14:31:14 +0000 (09:31 -0500)]
Create separate artifacts in GitHub workflows
Timo Heister [Mon, 10 Feb 2020 14:19:42 +0000 (09:19 -0500)]
Merge pull request #9500 from drwells/remove-eps-step-6
Remove eps step 6
Jihuan Tian [Mon, 10 Feb 2020 05:48:50 +0000 (13:48 +0800)]
Merge remote-tracking branch 'upstream/master' into jihuan-tian-contrib
Jihuan Tian [Mon, 10 Feb 2020 05:47:26 +0000 (13:47 +0800)]
Add a description file for the fix committed in
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