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https://gitweb.dealii.org/ - dealii-svn.git/log
turcksin [Thu, 9 Jan 2014 14:44:11 +0000 (14:44 +0000)]
Merge from trunk.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@32186
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bangerth [Thu, 9 Jan 2014 03:37:14 +0000 (03:37 +0000)]
Fix another comment that was no longer accurate.
git-svn-id: https://svn.dealii.org/trunk@32185
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bangerth [Thu, 9 Jan 2014 03:16:55 +0000 (03:16 +0000)]
Fix a comment that is wrong because it was simply copy-pasted.
git-svn-id: https://svn.dealii.org/trunk@32184
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bangerth [Thu, 9 Jan 2014 00:28:34 +0000 (00:28 +0000)]
Mention previous changes.
git-svn-id: https://svn.dealii.org/trunk@32183
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bangerth [Thu, 9 Jan 2014 00:18:50 +0000 (00:18 +0000)]
Fix the same bug in one more place.
git-svn-id: https://svn.dealii.org/trunk@32182
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bangerth [Thu, 9 Jan 2014 00:11:48 +0000 (00:11 +0000)]
Fix more bugs...
git-svn-id: https://svn.dealii.org/trunk@32181
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bangerth [Thu, 9 Jan 2014 00:02:39 +0000 (00:02 +0000)]
Fix more bugs.
git-svn-id: https://svn.dealii.org/trunk@32180
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bangerth [Wed, 8 Jan 2014 23:32:11 +0000 (23:32 +0000)]
Fix a testcase by Minh Do-Quang: DataOut also got with FE_Nothing elements.
git-svn-id: https://svn.dealii.org/trunk@32179
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bangerth [Wed, 8 Jan 2014 22:54:05 +0000 (22:54 +0000)]
Fix a testcase by Minh Do-Quang: FESystem got a bit confused with FE_Nothing elements.
git-svn-id: https://svn.dealii.org/trunk@32178
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bangerth [Wed, 8 Jan 2014 02:40:27 +0000 (02:40 +0000)]
Add one.
git-svn-id: https://svn.dealii.org/trunk@32176
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heister [Tue, 7 Jan 2014 13:57:17 +0000 (13:57 +0000)]
fix typo
git-svn-id: https://svn.dealii.org/trunk@32175
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kronbichler [Tue, 7 Jan 2014 08:23:15 +0000 (08:23 +0000)]
Make compile with 64 bit integers.
git-svn-id: https://svn.dealii.org/trunk@32174
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buerg [Sun, 5 Jan 2014 23:45:35 +0000 (23:45 +0000)]
Fix bug in project_boundary_values_curl_conforming also for higher-order case.
git-svn-id: https://svn.dealii.org/trunk@32172
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buerg [Sun, 5 Jan 2014 23:39:01 +0000 (23:39 +0000)]
Fix bug in project_boundary_values_curl_conforming.
git-svn-id: https://svn.dealii.org/trunk@32171
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kanschat [Sat, 4 Jan 2014 23:40:41 +0000 (23:40 +0000)]
Document deprecations
git-svn-id: https://svn.dealii.org/trunk@32169
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kanschat [Sat, 4 Jan 2014 23:27:48 +0000 (23:27 +0000)]
test results fixed
old code was wrong, new code is hopefully better
git-svn-id: https://svn.dealii.org/trunk@32168
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heister [Sat, 4 Jan 2014 23:24:03 +0000 (23:24 +0000)]
rework MGConstrainedDofs to use IndexSet as the datastructure
git-svn-id: https://svn.dealii.org/trunk@32167
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kanschat [Sat, 4 Jan 2014 23:23:43 +0000 (23:23 +0000)]
simplify logic
git-svn-id: https://svn.dealii.org/trunk@32166
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kanschat [Sat, 4 Jan 2014 23:12:47 +0000 (23:12 +0000)]
is_boundary_index() returns false if no boundary indices are set
git-svn-id: https://svn.dealii.org/trunk@32165
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heister [Sat, 4 Jan 2014 09:26:17 +0000 (09:26 +0000)]
MGTools::make_boundary_list can work on ghost cells too
git-svn-id: https://svn.dealii.org/trunk@32164
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heister [Fri, 3 Jan 2014 18:03:48 +0000 (18:03 +0000)]
typo
git-svn-id: https://svn.dealii.org/trunk@32162
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kanschat [Fri, 3 Jan 2014 17:49:10 +0000 (17:49 +0000)]
remove one big field
git-svn-id: https://svn.dealii.org/trunk@32161
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kanschat [Fri, 3 Jan 2014 17:48:41 +0000 (17:48 +0000)]
remove if with identical code in both branches
git-svn-id: https://svn.dealii.org/trunk@32160
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kanschat [Fri, 3 Jan 2014 16:30:11 +0000 (16:30 +0000)]
simplify again
git-svn-id: https://svn.dealii.org/trunk@32159
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heister [Fri, 3 Jan 2014 13:54:05 +0000 (13:54 +0000)]
add comment
git-svn-id: https://svn.dealii.org/trunk@32156
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heister [Fri, 3 Jan 2014 13:52:50 +0000 (13:52 +0000)]
remove superfluous boundary logic
git-svn-id: https://svn.dealii.org/trunk@32155
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heister [Fri, 3 Jan 2014 13:50:27 +0000 (13:50 +0000)]
simplify test
git-svn-id: https://svn.dealii.org/trunk@32154
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heister [Fri, 3 Jan 2014 13:48:18 +0000 (13:48 +0000)]
add test to check meshworker boundary terms
git-svn-id: https://svn.dealii.org/trunk@32153
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heister [Fri, 3 Jan 2014 13:47:57 +0000 (13:47 +0000)]
meshworker: only assemble boundary terms for own cells
git-svn-id: https://svn.dealii.org/trunk@32152
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heister [Fri, 3 Jan 2014 13:34:19 +0000 (13:34 +0000)]
remove dead code
git-svn-id: https://svn.dealii.org/trunk@32151
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kanschat [Fri, 3 Jan 2014 13:34:16 +0000 (13:34 +0000)]
add documentation of level_cell
git-svn-id: https://svn.dealii.org/trunk@32150
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heister [Fri, 3 Jan 2014 13:31:55 +0000 (13:31 +0000)]
fix parallel mg test
git-svn-id: https://svn.dealii.org/trunk@32149
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heister [Fri, 3 Jan 2014 13:30:18 +0000 (13:30 +0000)]
handle artificial cells in DofInfoBox
git-svn-id: https://svn.dealii.org/trunk@32148
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kanschat [Fri, 3 Jan 2014 12:16:21 +0000 (12:16 +0000)]
remove default argument
git-svn-id: https://svn.dealii.org/trunk@32147
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heister [Fri, 3 Jan 2014 12:02:03 +0000 (12:02 +0000)]
add new test
git-svn-id: https://svn.dealii.org/trunk@32146
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heister [Fri, 3 Jan 2014 11:49:35 +0000 (11:49 +0000)]
update meshworker tests
git-svn-id: https://svn.dealii.org/trunk@32145
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heister [Fri, 3 Jan 2014 11:48:05 +0000 (11:48 +0000)]
meshworker: work on logic for ghost faces
git-svn-id: https://svn.dealii.org/trunk@32144
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kanschat [Fri, 3 Jan 2014 11:47:30 +0000 (11:47 +0000)]
Make new function default
git-svn-id: https://svn.dealii.org/trunk@32143
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kanschat [Fri, 3 Jan 2014 11:15:53 +0000 (11:15 +0000)]
remove deprecated constructor
git-svn-id: https://svn.dealii.org/trunk@32142
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heister [Fri, 3 Jan 2014 10:36:49 +0000 (10:36 +0000)]
meshworker loop: own_faces=both with hanging nodes not supported
git-svn-id: https://svn.dealii.org/trunk@32141
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kanschat [Fri, 3 Jan 2014 10:29:59 +0000 (10:29 +0000)]
Note that both side processing is not implemetned for hanging nodes
git-svn-id: https://svn.dealii.org/trunk@32140
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heister [Fri, 3 Jan 2014 10:15:57 +0000 (10:15 +0000)]
add meshworker tests
git-svn-id: https://svn.dealii.org/trunk@32139
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heister [Fri, 3 Jan 2014 10:13:47 +0000 (10:13 +0000)]
meshworker loop: use LoopControl, add cells_first flag, fix logic, deprecate old functions
git-svn-id: https://svn.dealii.org/trunk@32138
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heister [Fri, 3 Jan 2014 10:01:50 +0000 (10:01 +0000)]
update publications html page
git-svn-id: https://svn.dealii.org/trunk@32137
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heister [Fri, 3 Jan 2014 09:35:53 +0000 (09:35 +0000)]
remove arraycolsep in documentation because mathjax can not deal with it
git-svn-id: https://svn.dealii.org/trunk@32135
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maier [Wed, 1 Jan 2014 12:42:27 +0000 (12:42 +0000)]
CMake: Add a configuration option for mathjax
git-svn-id: https://svn.dealii.org/trunk@32134
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maier [Wed, 1 Jan 2014 12:17:20 +0000 (12:17 +0000)]
Bugfix: Only compile bundled boost::iostreams if zlib is available
git-svn-id: https://svn.dealii.org/trunk@32133
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turcksin [Mon, 30 Dec 2013 16:44:28 +0000 (16:44 +0000)]
Merge from trunk.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@32131
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kronbichler [Mon, 30 Dec 2013 16:37:35 +0000 (16:37 +0000)]
Cleanup some code
git-svn-id: https://svn.dealii.org/trunk@32130
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kronbichler [Mon, 30 Dec 2013 09:06:39 +0000 (09:06 +0000)]
Fix compilation with 64 bit integers
git-svn-id: https://svn.dealii.org/trunk@32129
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kronbichler [Mon, 30 Dec 2013 07:43:47 +0000 (07:43 +0000)]
Forgot to set default argument
git-svn-id: https://svn.dealii.org/trunk@32128
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kronbichler [Sun, 29 Dec 2013 21:04:05 +0000 (21:04 +0000)]
One more
git-svn-id: https://svn.dealii.org/trunk@32127
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kronbichler [Sun, 29 Dec 2013 19:52:11 +0000 (19:52 +0000)]
Fix Trilinos vectors
git-svn-id: https://svn.dealii.org/trunk@32126
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bangerth [Thu, 26 Dec 2013 16:03:28 +0000 (16:03 +0000)]
Implement a parallel for approach for WorkStream::run when the copier function is empty.
git-svn-id: https://svn.dealii.org/trunk@32124
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bangerth [Thu, 26 Dec 2013 13:41:56 +0000 (13:41 +0000)]
Patch by Valentin Zingan: Add VectorTools::interpolate_based_on_material_id.
git-svn-id: https://svn.dealii.org/trunk@32123
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heister [Wed, 25 Dec 2013 18:09:10 +0000 (18:09 +0000)]
update step-18 to write .vtu files
git-svn-id: https://svn.dealii.org/trunk@32122
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maier [Wed, 25 Dec 2013 11:13:36 +0000 (11:13 +0000)]
Make Clang happy: Put default parameter to declaration as is required by the standard ([decl.fct.default] 3 + 4)
Also remove tabs and reindent parts of the file
git-svn-id: https://svn.dealii.org/trunk@32121
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kronbichler [Wed, 25 Dec 2013 10:53:09 +0000 (10:53 +0000)]
Actually enable parallel run of WorkStream. Now some tests might fail from time to time because writing into a TrilinosWrappers::MPI::Vector is not thread-safe. Will fix that during the next days
git-svn-id: https://svn.dealii.org/trunk@32120
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kronbichler [Wed, 25 Dec 2013 10:52:09 +0000 (10:52 +0000)]
Make compile with clang
git-svn-id: https://svn.dealii.org/trunk@32119
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maier [Wed, 25 Dec 2013 10:31:51 +0000 (10:31 +0000)]
Revert r32112 "Export whether we have found bzip2."
This is already present in config.h.in
git-svn-id: https://svn.dealii.org/trunk@32118
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maier [Tue, 24 Dec 2013 19:41:20 +0000 (19:41 +0000)]
CMake: Workaround for a CMake bug: Add the library to the library component
git-svn-id: https://svn.dealii.org/trunk@32117
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bangerth [Tue, 24 Dec 2013 18:56:29 +0000 (18:56 +0000)]
Revert r32111. It doesn't work because when we compile boost files, we apparently have no access to the deal.II config.h file.
git-svn-id: https://svn.dealii.org/trunk@32116
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maier [Tue, 24 Dec 2013 17:45:19 +0000 (17:45 +0000)]
Quicktests: Remove "build_library" target - this dependency is already implicitly present..
git-svn-id: https://svn.dealii.org/trunk@32115
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maier [Tue, 24 Dec 2013 17:41:19 +0000 (17:41 +0000)]
CMake: Bugfix, let library and build_library depend on the debug library, too
git-svn-id: https://svn.dealii.org/trunk@32114
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bangerth [Tue, 24 Dec 2013 15:06:56 +0000 (15:06 +0000)]
First step towards using parallel_for whenever the copier function is
empty: defer from implementation 2 to implementation 3.
git-svn-id: https://svn.dealii.org/trunk@32113
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bangerth [Tue, 24 Dec 2013 14:16:41 +0000 (14:16 +0000)]
Export whether we have found bzip2.
git-svn-id: https://svn.dealii.org/trunk@32112
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bangerth [Tue, 24 Dec 2013 14:15:56 +0000 (14:15 +0000)]
Guard these files to make sure one gets compiler errors and not just linker errors.
git-svn-id: https://svn.dealii.org/trunk@32111
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kronbichler [Tue, 24 Dec 2013 10:07:14 +0000 (10:07 +0000)]
Committed test cases too quickly
git-svn-id: https://svn.dealii.org/trunk@32108
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maier [Tue, 24 Dec 2013 09:55:14 +0000 (09:55 +0000)]
CMake: Unfortunately, for FindLAPACK and FindBzip2 we need a C compiler to be set up...
git-svn-id: https://svn.dealii.org/trunk@32107
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kronbichler [Mon, 23 Dec 2013 22:14:25 +0000 (22:14 +0000)]
Implement new reinit method to Trilinos sparsity pattern that makes writing into matrices thread-safe.
git-svn-id: https://svn.dealii.org/trunk@32106
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bangerth [Mon, 23 Dec 2013 19:56:17 +0000 (19:56 +0000)]
Improve error messages.
git-svn-id: https://svn.dealii.org/trunk@32105
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bangerth [Mon, 23 Dec 2013 19:55:14 +0000 (19:55 +0000)]
Configure as far as possible if libz or libbz2 can not be found or configured.
git-svn-id: https://svn.dealii.org/trunk@32104
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bangerth [Mon, 23 Dec 2013 15:43:39 +0000 (15:43 +0000)]
Issue pointed out by Jean Ragusa: Properly parenthesize a formula.
git-svn-id: https://svn.dealii.org/trunk@32103
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bangerth [Mon, 23 Dec 2013 15:43:14 +0000 (15:43 +0000)]
Issue pointed out by Jean Ragusa: No need to set system_rhs to zero, sicne the reinit() immediately above it already does that.
git-svn-id: https://svn.dealii.org/trunk@32102
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maier [Mon, 23 Dec 2013 13:51:24 +0000 (13:51 +0000)]
Typos
git-svn-id: https://svn.dealii.org/trunk@32101
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bangerth [Mon, 23 Dec 2013 13:23:36 +0000 (13:23 +0000)]
State that these two elements are discontinuous at places where faces meet.
git-svn-id: https://svn.dealii.org/trunk@32100
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maier [Mon, 23 Dec 2013 10:05:06 +0000 (10:05 +0000)]
CMake: Improve error message
git-svn-id: https://svn.dealii.org/trunk@32099
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maier [Mon, 23 Dec 2013 10:00:14 +0000 (10:00 +0000)]
CMake: Bugfix: Also change DEAL_II_USE_CXX11 to DEAL_II_WITH_CXX11 in cmake
files and in the bundled folder
git-svn-id: https://svn.dealii.org/trunk@32098
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maier [Sun, 22 Dec 2013 18:36:41 +0000 (18:36 +0000)]
CMake: Organize C++11 support as a toggable feature
git-svn-id: https://svn.dealii.org/trunk@32097
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maier [Sun, 22 Dec 2013 17:03:18 +0000 (17:03 +0000)]
CMake: Add support for bzip2.
git-svn-id: https://svn.dealii.org/trunk@32096
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maier [Sun, 22 Dec 2013 15:30:55 +0000 (15:30 +0000)]
CMake: Clean up configure_boost.cmake and simplify detection logic
git-svn-id: https://svn.dealii.org/trunk@32095
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bangerth [Sun, 22 Dec 2013 14:37:42 +0000 (14:37 +0000)]
Add one.
git-svn-id: https://svn.dealii.org/trunk@32094
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bangerth [Sat, 21 Dec 2013 22:23:26 +0000 (22:23 +0000)]
Revert r32092 because it doesn't work on systems that DO have libbz2.
git-svn-id: https://svn.dealii.org/trunk@32093
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bangerth [Sat, 21 Dec 2013 22:15:12 +0000 (22:15 +0000)]
Configure things so that we only build BOOST.Iostreams if libz and libbz2 are actually available.
git-svn-id: https://svn.dealii.org/trunk@32092
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heister [Sat, 21 Dec 2013 21:25:56 +0000 (21:25 +0000)]
remove two dead links in documentation
git-svn-id: https://svn.dealii.org/trunk@32090
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maier [Sat, 21 Dec 2013 17:30:44 +0000 (17:30 +0000)]
Add documentation
git-svn-id: https://svn.dealii.org/trunk@32089
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bangerth [Sat, 21 Dec 2013 17:14:07 +0000 (17:14 +0000)]
Avoid the use of std::copy_n -- this is apparently C++11 stuff.
git-svn-id: https://svn.dealii.org/trunk@32088
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bangerth [Sat, 21 Dec 2013 17:06:23 +0000 (17:06 +0000)]
Add cmake configury stuff to also build the boost::iostreams library.
git-svn-id: https://svn.dealii.org/trunk@32087
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bangerth [Sat, 21 Dec 2013 17:03:28 +0000 (17:03 +0000)]
Add library subdirectory, but excluding all the documentation, build, test and example subdirectories.
git-svn-id: https://svn.dealii.org/trunk@32086
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bangerth [Sat, 21 Dec 2013 15:02:23 +0000 (15:02 +0000)]
Properly call the template arguments 'InputIterator', rather than 'ForwardIterator'.
git-svn-id: https://svn.dealii.org/trunk@32085
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bangerth [Sat, 21 Dec 2013 14:53:37 +0000 (14:53 +0000)]
Introduce more powerful constructors for the table classes.
git-svn-id: https://svn.dealii.org/trunk@32084
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bangerth [Sat, 21 Dec 2013 14:41:08 +0000 (14:41 +0000)]
Add another test.
git-svn-id: https://svn.dealii.org/trunk@32083
0785d39b -7218-0410-832d-
ea1e28bc413d
bangerth [Sat, 21 Dec 2013 14:24:01 +0000 (14:24 +0000)]
Add new tests.
git-svn-id: https://svn.dealii.org/trunk@32082
0785d39b -7218-0410-832d-
ea1e28bc413d
bangerth [Sat, 21 Dec 2013 13:44:29 +0000 (13:44 +0000)]
Generalize TableBase::fill.
git-svn-id: https://svn.dealii.org/trunk@32081
0785d39b -7218-0410-832d-
ea1e28bc413d
bangerth [Sat, 21 Dec 2013 13:25:51 +0000 (13:25 +0000)]
Mention a class that now exists.
git-svn-id: https://svn.dealii.org/trunk@32080
0785d39b -7218-0410-832d-
ea1e28bc413d
bangerth [Sat, 21 Dec 2013 13:24:23 +0000 (13:24 +0000)]
Properly qualify references to classes.
git-svn-id: https://svn.dealii.org/trunk@32079
0785d39b -7218-0410-832d-
ea1e28bc413d
bangerth [Sat, 21 Dec 2013 13:21:52 +0000 (13:21 +0000)]
Mention BOOST Iostream.
git-svn-id: https://svn.dealii.org/trunk@32078
0785d39b -7218-0410-832d-
ea1e28bc413d
bangerth [Sat, 21 Dec 2013 13:17:28 +0000 (13:17 +0000)]
Add new test.
git-svn-id: https://svn.dealii.org/trunk@32077
0785d39b -7218-0410-832d-
ea1e28bc413d
bangerth [Sat, 21 Dec 2013 04:57:01 +0000 (04:57 +0000)]
Qualify references to Table from within namespace internal in preparation for a patch to come next.
git-svn-id: https://svn.dealii.org/trunk@32076
0785d39b -7218-0410-832d-
ea1e28bc413d
bangerth [Sat, 21 Dec 2013 04:56:24 +0000 (04:56 +0000)]
Improve an error message.
git-svn-id: https://svn.dealii.org/trunk@32075
0785d39b -7218-0410-832d-
ea1e28bc413d
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