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https://gitweb.dealii.org/ - dealii-svn.git/log
bangerth [Wed, 27 Mar 2013 22:12:06 +0000 (22:12 +0000)]
Fix merge conflict.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29092
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turcksin [Wed, 27 Mar 2013 21:58:09 +0000 (21:58 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29091
0785d39b -7218-0410-832d-
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bangerth [Wed, 27 Mar 2013 20:59:12 +0000 (20:59 +0000)]
Update test -- the issue is fixed in Trilinos after 11.0.3.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29088
0785d39b -7218-0410-832d-
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bangerth [Wed, 27 Mar 2013 20:07:09 +0000 (20:07 +0000)]
Add documentation to PreconditionAMG::AdditionalData.
git-svn-id: https://svn.dealii.org/trunk@29087
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maier [Wed, 27 Mar 2013 19:40:53 +0000 (19:40 +0000)]
Bugfix in build_test: Omit branches/ for branch names
git-svn-id: https://svn.dealii.org/trunk@29085
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maier [Wed, 27 Mar 2013 17:37:14 +0000 (17:37 +0000)]
CMake: Bugfix
git-svn-id: https://svn.dealii.org/trunk@29082
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maier [Wed, 27 Mar 2013 17:11:27 +0000 (17:11 +0000)]
CMake: Disable all ENABLE_IF_LINKS checks for now until the macro is properly implemented
git-svn-id: https://svn.dealii.org/trunk@29081
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maier [Wed, 27 Mar 2013 17:11:26 +0000 (17:11 +0000)]
CMake: Bugfix: Implement ENABLE_IF_LINKS with CHECK_CXX_COMPILER_FLAG
git-svn-id: https://svn.dealii.org/trunk@29080
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maier [Wed, 27 Mar 2013 16:56:22 +0000 (16:56 +0000)]
CMake: Bugfix: Remove invalid characters from test names in ENABLE_IF_(SUPPORTED|LINKS)
git-svn-id: https://svn.dealii.org/trunk@29079
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turcksin [Wed, 27 Mar 2013 16:49:39 +0000 (16:49 +0000)]
Fix a bug introduced in revision 29049.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29078
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heister [Wed, 27 Mar 2013 15:20:45 +0000 (15:20 +0000)]
remove code from TimerOutput that messes with the total time
git-svn-id: https://svn.dealii.org/trunk@29077
0785d39b -7218-0410-832d-
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heister [Wed, 27 Mar 2013 15:08:37 +0000 (15:08 +0000)]
fix test
git-svn-id: https://svn.dealii.org/trunk@29076
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heister [Wed, 27 Mar 2013 15:07:57 +0000 (15:07 +0000)]
convert more tests to MPI_InitFinalize
git-svn-id: https://svn.dealii.org/trunk@29075
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heister [Wed, 27 Mar 2013 14:53:45 +0000 (14:53 +0000)]
switch more tests to MPI_InitFinalize
git-svn-id: https://svn.dealii.org/trunk@29074
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heister [Wed, 27 Mar 2013 14:37:04 +0000 (14:37 +0000)]
remove deprecated compress calls
git-svn-id: https://svn.dealii.org/trunk@29073
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bangerth [Wed, 27 Mar 2013 14:22:53 +0000 (14:22 +0000)]
Outlaw the use of local_range() and in_local_range() if the vector is not contiguous on the current processor.
git-svn-id: https://svn.dealii.org/trunk@29072
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maier [Wed, 27 Mar 2013 14:02:46 +0000 (14:02 +0000)]
Don't run step-21 in the build_test.
git-svn-id: https://svn.dealii.org/trunk@29071
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bangerth [Wed, 27 Mar 2013 14:02:32 +0000 (14:02 +0000)]
Improve error message.
git-svn-id: https://svn.dealii.org/trunk@29070
0785d39b -7218-0410-832d-
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bangerth [Wed, 27 Mar 2013 13:59:55 +0000 (13:59 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@29069
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bangerth [Wed, 27 Mar 2013 13:03:14 +0000 (13:03 +0000)]
Add an assertion.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29068
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bangerth [Wed, 27 Mar 2013 12:52:57 +0000 (12:52 +0000)]
Fix another place.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29067
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bangerth [Wed, 27 Mar 2013 12:45:18 +0000 (12:45 +0000)]
Use correct construct to generate an Epetra_Map.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29066
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bangerth [Wed, 27 Mar 2013 12:44:52 +0000 (12:44 +0000)]
Use correct construct to generate an Epetra_Map.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29065
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bangerth [Wed, 27 Mar 2013 12:24:08 +0000 (12:24 +0000)]
Add comment.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29064
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bangerth [Wed, 27 Mar 2013 12:22:58 +0000 (12:22 +0000)]
Add a test that currently crashes.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29063
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bangerth [Wed, 27 Mar 2013 11:44:16 +0000 (11:44 +0000)]
Fix up a few tests.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29062
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bangerth [Wed, 27 Mar 2013 11:40:10 +0000 (11:40 +0000)]
Make run again.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29061
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bangerth [Wed, 27 Mar 2013 11:20:54 +0000 (11:20 +0000)]
Simplify test.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29060
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maier [Wed, 27 Mar 2013 11:13:39 +0000 (11:13 +0000)]
CMake: Enable -pedantic at the very beginning
git-svn-id: https://svn.dealii.org/trunk@29059
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maier [Wed, 27 Mar 2013 11:13:38 +0000 (11:13 +0000)]
CMake: Workaround a bug in CMake's XCode generator
git-svn-id: https://svn.dealii.org/trunk@29058
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bangerth [Wed, 27 Mar 2013 10:49:48 +0000 (10:49 +0000)]
Add something to the documentation.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29057
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maier [Wed, 27 Mar 2013 10:23:05 +0000 (10:23 +0000)]
Improve build_test:
- Remove obsolete lines from build_test
- add a bunch of tests to run and a toggle RUN_TESTS to skip this step
- run examples in debug and build configuration
git-svn-id: https://svn.dealii.org/trunk@29056
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maier [Wed, 27 Mar 2013 10:23:04 +0000 (10:23 +0000)]
CMake: Don't be too greedy when installing examples
git-svn-id: https://svn.dealii.org/trunk@29055
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heister [Wed, 27 Mar 2013 03:46:26 +0000 (03:46 +0000)]
switch tests to MPI_InitFinalize (some more to come)
git-svn-id: https://svn.dealii.org/trunk@29054
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heister [Wed, 27 Mar 2013 03:33:29 +0000 (03:33 +0000)]
make PETSc tests use MPI_InitFinalize
git-svn-id: https://svn.dealii.org/trunk@29053
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heister [Wed, 27 Mar 2013 03:31:17 +0000 (03:31 +0000)]
make MPI_InitFinalize initialize PETSc even if not using MPI
git-svn-id: https://svn.dealii.org/trunk@29052
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bangerth [Wed, 27 Mar 2013 02:04:37 +0000 (02:04 +0000)]
Add.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29051
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bangerth [Wed, 27 Mar 2013 01:55:31 +0000 (01:55 +0000)]
Fix indentation.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29050
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turcksin [Tue, 26 Mar 2013 22:03:23 +0000 (22:03 +0000)]
Fix some inconsistencies in the use of 64 bits functions of Trilinos.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29049
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bangerth [Tue, 26 Mar 2013 21:33:19 +0000 (21:33 +0000)]
Several more.
git-svn-id: https://svn.dealii.org/trunk@29048
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heister [Tue, 26 Mar 2013 20:18:22 +0000 (20:18 +0000)]
PETSc examples work with threading enabled at configure time. Turn off at runtime.
git-svn-id: https://svn.dealii.org/trunk@29047
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heister [Tue, 26 Mar 2013 20:17:22 +0000 (20:17 +0000)]
Check at runtime that we do not use multiple threads when using PETSc vectors
git-svn-id: https://svn.dealii.org/trunk@29046
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heister [Tue, 26 Mar 2013 20:16:53 +0000 (20:16 +0000)]
Routine to set number of threads of TBB. MPI_InitFinalize by default sets it to 1.
git-svn-id: https://svn.dealii.org/trunk@29045
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heister [Tue, 26 Mar 2013 20:14:49 +0000 (20:14 +0000)]
Fix TimerOutput::reset() total time
git-svn-id: https://svn.dealii.org/trunk@29044
0785d39b -7218-0410-832d-
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bangerth [Tue, 26 Mar 2013 19:51:19 +0000 (19:51 +0000)]
Fix typo (reported by Yunhuang Zhang).
git-svn-id: https://svn.dealii.org/trunk@29043
0785d39b -7218-0410-832d-
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turcksin [Tue, 26 Mar 2013 19:40:07 +0000 (19:40 +0000)]
Replace 64 bits functions by generic methods.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29042
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kainan.wang [Tue, 26 Mar 2013 18:39:23 +0000 (18:39 +0000)]
Change places in trilinos tests
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29041
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kainan.wang [Tue, 26 Mar 2013 16:49:47 +0000 (16:49 +0000)]
generic methods for XXX and XXX64 in trilinos
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29040
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turcksin [Tue, 26 Mar 2013 15:50:26 +0000 (15:50 +0000)]
Use 64 bits version of trilinos functions and replace n_global_elements by NumGlobalElements64 which according to the Trilinos library works for 32 and 64 bits.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29039
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maier [Tue, 26 Mar 2013 12:48:08 +0000 (12:48 +0000)]
CMake: Bugfix: Add an INSTALL_NAME_DIR target property to avoid the use of DYLD_LIBRARY_PATH on Mac OS X
git-svn-id: https://svn.dealii.org/trunk@29038
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kainan.wang [Tue, 26 Mar 2013 06:46:42 +0000 (06:46 +0000)]
Change more places for trilinos XXX64
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29037
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kainan.wang [Tue, 26 Mar 2013 05:16:16 +0000 (05:16 +0000)]
change two trilinos function calls to XXX64
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29036
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bangerth [Tue, 26 Mar 2013 02:51:59 +0000 (02:51 +0000)]
Make sure we call the correct Trilinos function.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29035
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bangerth [Tue, 26 Mar 2013 00:30:09 +0000 (00:30 +0000)]
Fix one more place.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29034
0785d39b -7218-0410-832d-
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bangerth [Tue, 26 Mar 2013 00:21:13 +0000 (00:21 +0000)]
Make run again.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29033
0785d39b -7218-0410-832d-
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bangerth [Tue, 26 Mar 2013 00:06:21 +0000 (00:06 +0000)]
Use correct Trilinos function to avoid an exception being thrown.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29032
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turcksin [Mon, 25 Mar 2013 22:38:21 +0000 (22:38 +0000)]
Fix test 52 of Trilinos to use 64 bits and fix a bug in trilinos_vector.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29031
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turcksin [Mon, 25 Mar 2013 21:27:09 +0000 (21:27 +0000)]
Use the 64 bits version of Trilinos 11.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29030
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maier [Mon, 25 Mar 2013 15:10:41 +0000 (15:10 +0000)]
CMake: Resolve a cache invalidation problem
git-svn-id: https://svn.dealii.org/trunk@29028
0785d39b -7218-0410-832d-
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bangerth [Mon, 25 Mar 2013 14:53:34 +0000 (14:53 +0000)]
Patch by Juan Carlos Araujo Cabarcas: Explain how to use ARPACK as an alternative to SLEPc.
git-svn-id: https://svn.dealii.org/trunk@29027
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heister [Mon, 25 Mar 2013 14:21:11 +0000 (14:21 +0000)]
fix some of the multigrid 64 bit indexing
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29025
0785d39b -7218-0410-832d-
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turcksin [Mon, 25 Mar 2013 14:11:54 +0000 (14:11 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29024
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bangerth [Mon, 25 Mar 2013 14:10:40 +0000 (14:10 +0000)]
Formatting improvements.
git-svn-id: https://svn.dealii.org/trunk@29023
0785d39b -7218-0410-832d-
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bangerth [Mon, 25 Mar 2013 03:04:45 +0000 (03:04 +0000)]
Use correct data type in MPI communication.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29022
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bangerth [Sun, 24 Mar 2013 23:41:07 +0000 (23:41 +0000)]
Use correct data type in a couple more places.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29021
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bangerth [Sun, 24 Mar 2013 23:22:39 +0000 (23:22 +0000)]
Add a comment.
git-svn-id: https://svn.dealii.org/trunk@29020
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bangerth [Sun, 24 Mar 2013 23:11:14 +0000 (23:11 +0000)]
Make two constructor arguments references.
git-svn-id: https://svn.dealii.org/trunk@29019
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maier [Sun, 24 Mar 2013 22:41:12 +0000 (22:41 +0000)]
CMake: Remove unnecessary file globs
git-svn-id: https://svn.dealii.org/trunk@29018
0785d39b -7218-0410-832d-
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maier [Sun, 24 Mar 2013 20:06:48 +0000 (20:06 +0000)]
CMake: Fix a bunch of typos in ./doc/. This resolves the issue with multiple doxygen runs
git-svn-id: https://svn.dealii.org/trunk@29017
0785d39b -7218-0410-832d-
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maier [Sun, 24 Mar 2013 16:44:46 +0000 (16:44 +0000)]
CMake: Add librt.so to the link interface of UMFPACK to avoid an underlinkage problem.
git-svn-id: https://svn.dealii.org/trunk@29016
0785d39b -7218-0410-832d-
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bangerth [Sun, 24 Mar 2013 16:38:07 +0000 (16:38 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@29015
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maier [Sun, 24 Mar 2013 15:35:39 +0000 (15:35 +0000)]
Fix a typo
git-svn-id: https://svn.dealii.org/trunk@29014
0785d39b -7218-0410-832d-
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maier [Sun, 24 Mar 2013 13:33:57 +0000 (13:33 +0000)]
CMake: Improve documentation wrt manual overrides
git-svn-id: https://svn.dealii.org/trunk@29013
0785d39b -7218-0410-832d-
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maier [Sun, 24 Mar 2013 11:04:13 +0000 (11:04 +0000)]
CMake: Bugfix: Print out the component selection as well
git-svn-id: https://svn.dealii.org/trunk@29012
0785d39b -7218-0410-832d-
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maier [Sun, 24 Mar 2013 10:53:56 +0000 (10:53 +0000)]
CMake: Bugfix in FindTBB.cmake
git-svn-id: https://svn.dealii.org/trunk@29011
0785d39b -7218-0410-832d-
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maier [Sun, 24 Mar 2013 09:51:22 +0000 (09:51 +0000)]
CMake: Bugfix. Make bundled tbb compile again
git-svn-id: https://svn.dealii.org/trunk@29010
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maier [Sun, 24 Mar 2013 09:17:07 +0000 (09:17 +0000)]
CMake: Bugfix, switch the order of includes...
git-svn-id: https://svn.dealii.org/trunk@29009
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maier [Sun, 24 Mar 2013 01:34:48 +0000 (01:34 +0000)]
CMake: Bugfix, add SHLIBLD and SHLIBFLAGS back to Make.global_options
git-svn-id: https://svn.dealii.org/trunk@29008
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maier [Sun, 24 Mar 2013 01:22:32 +0000 (01:22 +0000)]
CMake: Make includes a bit more robust
git-svn-id: https://svn.dealii.org/trunk@29007
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maier [Sun, 24 Mar 2013 00:33:12 +0000 (00:33 +0000)]
CMake: Bugfix
git-svn-id: https://svn.dealii.org/trunk@29006
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maier [Sun, 24 Mar 2013 00:09:26 +0000 (00:09 +0000)]
Remove forgotten obsolete file
git-svn-id: https://svn.dealii.org/trunk@29005
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maier [Sat, 23 Mar 2013 23:57:36 +0000 (23:57 +0000)]
CMake: Finish CMake documentation
git-svn-id: https://svn.dealii.org/trunk@29004
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maier [Sat, 23 Mar 2013 23:57:19 +0000 (23:57 +0000)]
CMake: Bugfixes in configure_boost.cmake
git-svn-id: https://svn.dealii.org/trunk@29003
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maier [Sat, 23 Mar 2013 23:57:19 +0000 (23:57 +0000)]
CMake: Remove this little hack
git-svn-id: https://svn.dealii.org/trunk@29002
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maier [Sat, 23 Mar 2013 23:57:18 +0000 (23:57 +0000)]
CMake: Print external libraries in the summary
git-svn-id: https://svn.dealii.org/trunk@29001
0785d39b -7218-0410-832d-
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maier [Sat, 23 Mar 2013 23:57:17 +0000 (23:57 +0000)]
CMake: Fix a TODO in FindTBB.cmake
git-svn-id: https://svn.dealii.org/trunk@29000
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maier [Sat, 23 Mar 2013 23:57:16 +0000 (23:57 +0000)]
CMake: Some more documentation and code cleanup
git-svn-id: https://svn.dealii.org/trunk@28999
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maier [Sat, 23 Mar 2013 23:57:16 +0000 (23:57 +0000)]
Run some selected tests in the build_tests
git-svn-id: https://svn.dealii.org/trunk@28998
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bangerth [Sat, 23 Mar 2013 01:03:42 +0000 (01:03 +0000)]
Undo accidental checkin.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@28997
0785d39b -7218-0410-832d-
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bangerth [Sat, 23 Mar 2013 01:02:12 +0000 (01:02 +0000)]
Rename namespace TrilinosWrapper::types to TrilinosWrappers::types, to match the pre-existing namespace.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@28996
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heister [Fri, 22 Mar 2013 21:20:13 +0000 (21:20 +0000)]
benchmark: interactive plot
git-svn-id: https://svn.dealii.org/trunk@28995
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bangerth [Fri, 22 Mar 2013 19:41:17 +0000 (19:41 +0000)]
Document the use configuration of BLAS and LAPACK better.
git-svn-id: https://svn.dealii.org/trunk@28994
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turcksin [Fri, 22 Mar 2013 16:40:31 +0000 (16:40 +0000)]
Revert tests/mpi/compute_mean_value.cc to the correct version.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@28993
0785d39b -7218-0410-832d-
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bangerth [Fri, 22 Mar 2013 16:02:51 +0000 (16:02 +0000)]
Use the correct data type in MPI communications.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@28992
0785d39b -7218-0410-832d-
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bangerth [Fri, 22 Mar 2013 15:58:20 +0000 (15:58 +0000)]
Use the correct data type in MPI communications.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@28991
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young [Fri, 22 Mar 2013 15:52:10 +0000 (15:52 +0000)]
Function to instruct SLEPc to exploit symmetry operations.
git-svn-id: https://svn.dealii.org/trunk@28990
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kainan.wang [Fri, 22 Mar 2013 15:15:57 +0000 (15:15 +0000)]
Change several places to size_type in /test/petsc/
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@28989
0785d39b -7218-0410-832d-
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bangerth [Fri, 22 Mar 2013 15:09:48 +0000 (15:09 +0000)]
Make a few variable have their correct type.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@28988
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young [Fri, 22 Mar 2013 14:45:26 +0000 (14:45 +0000)]
Remove 64BIT directive in PETScWrappers. PetscErrorCode is always right.
git-svn-id: https://svn.dealii.org/trunk@28987
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turcksin [Fri, 22 Mar 2013 13:54:48 +0000 (13:54 +0000)]
Convert unsigned int to types::global_dof_index.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@28986
0785d39b -7218-0410-832d-
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