]>
https://gitweb.dealii.org/ - dealii-svn.git/log
heister [Thu, 6 Feb 2014 19:59:31 +0000 (19:59 +0000)]
merge from mainline
git-svn-id: https://svn.dealii.org/branches/branch_muparser@32425
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heister [Thu, 6 Feb 2014 18:55:54 +0000 (18:55 +0000)]
towards thread-safe muparser
git-svn-id: https://svn.dealii.org/branches/branch_muparser@32424
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bangerth [Thu, 6 Feb 2014 16:44:02 +0000 (16:44 +0000)]
Remove stray typename.
git-svn-id: https://svn.dealii.org/trunk@32423
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heister [Thu, 6 Feb 2014 16:21:29 +0000 (16:21 +0000)]
add another muparser flag
git-svn-id: https://svn.dealii.org/branches/branch_muparser@32422
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heister [Thu, 6 Feb 2014 16:18:43 +0000 (16:18 +0000)]
run test only if we have tbb
git-svn-id: https://svn.dealii.org/trunk@32421
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heister [Thu, 6 Feb 2014 16:17:55 +0000 (16:17 +0000)]
add multithreaded function_parser test
git-svn-id: https://svn.dealii.org/trunk@32420
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heister [Thu, 6 Feb 2014 16:17:10 +0000 (16:17 +0000)]
fix tbb quicktest
git-svn-id: https://svn.dealii.org/trunk@32419
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heister [Thu, 6 Feb 2014 14:51:04 +0000 (14:51 +0000)]
add another test for FunctionParser
git-svn-id: https://svn.dealii.org/trunk@32418
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heister [Thu, 6 Feb 2014 13:59:53 +0000 (13:59 +0000)]
first shot at bundling muparser
git-svn-id: https://svn.dealii.org/branches/branch_muparser@32417
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maier [Thu, 6 Feb 2014 01:03:21 +0000 (01:03 +0000)]
CMake: Bugfix
git-svn-id: https://svn.dealii.org/trunk@32416
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heister [Wed, 5 Feb 2014 20:35:58 +0000 (20:35 +0000)]
update affinity quicktest to work with 1 cpu and on mac
git-svn-id: https://svn.dealii.org/trunk@32415
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maier [Wed, 5 Feb 2014 18:21:11 +0000 (18:21 +0000)]
Quicktests: Use mpirun configured by FindMPI.cmake instead of generic "mpirun -n"
git-svn-id: https://svn.dealii.org/trunk@32414
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bangerth [Wed, 5 Feb 2014 17:19:04 +0000 (17:19 +0000)]
Try to work around a bug in MS VC++. This is not pretty, but if it gets the job done I'm ok with it.
git-svn-id: https://svn.dealii.org/trunk@32413
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bangerth [Wed, 5 Feb 2014 16:57:35 +0000 (16:57 +0000)]
Hopefully make MS VC++'s life a bit easier. Also leave a note in the documentation in a couple of places.
git-svn-id: https://svn.dealii.org/trunk@32412
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maier [Wed, 5 Feb 2014 10:43:56 +0000 (10:43 +0000)]
CMake: Bugfix: Add header to quick_tests. Closes bug 185.
git-svn-id: https://svn.dealii.org/trunk@32411
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bangerth [Tue, 4 Feb 2014 22:26:40 +0000 (22:26 +0000)]
Get the list of friends of a class right after a recent change.
git-svn-id: https://svn.dealii.org/trunk@32410
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bangerth [Tue, 4 Feb 2014 21:59:19 +0000 (21:59 +0000)]
Do not qualify an element in its own namespace.
git-svn-id: https://svn.dealii.org/trunk@32409
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bangerth [Tue, 4 Feb 2014 21:58:54 +0000 (21:58 +0000)]
Use the correct include file.
git-svn-id: https://svn.dealii.org/trunk@32408
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bangerth [Tue, 4 Feb 2014 21:45:30 +0000 (21:45 +0000)]
Reduce template contortion level by one in hopes that this helps MS VC++.
git-svn-id: https://svn.dealii.org/trunk@32407
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bangerth [Tue, 4 Feb 2014 21:44:57 +0000 (21:44 +0000)]
Pass array by reference instead of by value. This should also help MS VC++ which doesn't like the situation as is.
git-svn-id: https://svn.dealii.org/trunk@32406
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bangerth [Tue, 4 Feb 2014 21:31:42 +0000 (21:31 +0000)]
Make the spelling of 'lda' and 'level_dof_access' uniform between dof_accessor.h and .templates.h. Help MS VC++ by introducing a typedef rather than trying to be overly tricky with the return type of the face() function.
git-svn-id: https://svn.dealii.org/trunk@32405
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heister [Tue, 4 Feb 2014 20:17:15 +0000 (20:17 +0000)]
add test for GridTools::transform
git-svn-id: https://svn.dealii.org/trunk@32404
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maier [Tue, 4 Feb 2014 18:57:07 +0000 (18:57 +0000)]
CMake: Fix a configuration error on Debian Testing wrt. libSuiteSparse_config.a
git-svn-id: https://svn.dealii.org/trunk@32403
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heister [Tue, 4 Feb 2014 18:43:20 +0000 (18:43 +0000)]
make GridTools::transform work with hanging nodes
git-svn-id: https://svn.dealii.org/trunk@32402
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young [Tue, 4 Feb 2014 11:42:15 +0000 (11:42 +0000)]
Remove code duplication.
git-svn-id: https://svn.dealii.org/trunk@32401
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young [Tue, 4 Feb 2014 11:27:44 +0000 (11:27 +0000)]
Test PETSc FullMatrix reinit function.
git-svn-id: https://svn.dealii.org/trunk@32400
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bangerth [Mon, 3 Feb 2014 21:01:26 +0000 (21:01 +0000)]
Generalize test.
git-svn-id: https://svn.dealii.org/trunk@32397
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bangerth [Mon, 3 Feb 2014 19:43:22 +0000 (19:43 +0000)]
Remove a piece of debug code.
git-svn-id: https://svn.dealii.org/trunk@32396
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bangerth [Mon, 3 Feb 2014 19:41:25 +0000 (19:41 +0000)]
One more test for curls.
git-svn-id: https://svn.dealii.org/trunk@32395
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bangerth [Mon, 3 Feb 2014 17:06:24 +0000 (17:06 +0000)]
Fix a bug reported by Christoph Heiniger (including a description of how it should be fixed): The computation of curls was wrong.
git-svn-id: https://svn.dealii.org/trunk@32394
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heister [Mon, 3 Feb 2014 16:25:32 +0000 (16:25 +0000)]
fix example code that trips up doxygen
git-svn-id: https://svn.dealii.org/trunk@32393
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heister [Mon, 3 Feb 2014 16:24:36 +0000 (16:24 +0000)]
merge from mainline
git-svn-id: https://svn.dealii.org/branches/branch_muparser@32392
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bangerth [Mon, 3 Feb 2014 15:40:53 +0000 (15:40 +0000)]
Minor adjustments for style and in hopes of getting MS VC++ to like the file better than it used to.
git-svn-id: https://svn.dealii.org/trunk@32391
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bangerth [Mon, 3 Feb 2014 14:58:05 +0000 (14:58 +0000)]
Avoid what I believe is an unnecessary '::template ' in hopes that it makes MS VC++ happier.
git-svn-id: https://svn.dealii.org/trunk@32389
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heister [Mon, 3 Feb 2014 14:50:28 +0000 (14:50 +0000)]
formatting
git-svn-id: https://svn.dealii.org/trunk@32388
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heister [Mon, 3 Feb 2014 14:49:44 +0000 (14:49 +0000)]
add publication
git-svn-id: https://svn.dealii.org/trunk@32387
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kronbichler [Mon, 3 Feb 2014 14:41:54 +0000 (14:41 +0000)]
Refill comments
git-svn-id: https://svn.dealii.org/trunk@32386
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kronbichler [Mon, 3 Feb 2014 14:32:10 +0000 (14:32 +0000)]
Introduce mmult and second factorization routine.
git-svn-id: https://svn.dealii.org/trunk@32385
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bangerth [Mon, 3 Feb 2014 14:24:09 +0000 (14:24 +0000)]
DataOutBase no longer is a class.
git-svn-id: https://svn.dealii.org/trunk@32384
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kanschat [Sun, 2 Feb 2014 22:41:39 +0000 (22:41 +0000)]
add weighted mass matrix
git-svn-id: https://svn.dealii.org/trunk@32381
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kanschat [Sun, 2 Feb 2014 22:41:20 +0000 (22:41 +0000)]
add functions for clearing and initializing an MGTransferPrebuilt object
git-svn-id: https://svn.dealii.org/trunk@32380
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kanschat [Sun, 2 Feb 2014 22:40:45 +0000 (22:40 +0000)]
Newton::threshold() was missing
git-svn-id: https://svn.dealii.org/trunk@32379
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bangerth [Sun, 2 Feb 2014 21:53:39 +0000 (21:53 +0000)]
Help MS VC++ recognize which template function to take.
git-svn-id: https://svn.dealii.org/trunk@32378
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bangerth [Sun, 2 Feb 2014 20:53:38 +0000 (20:53 +0000)]
Complete specify namespace for a symbol to help MS VC++.
git-svn-id: https://svn.dealii.org/trunk@32377
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bangerth [Sun, 2 Feb 2014 19:37:02 +0000 (19:37 +0000)]
Address a few follow-up issues with the previous patches.
git-svn-id: https://svn.dealii.org/trunk@32376
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bangerth [Sun, 2 Feb 2014 19:05:08 +0000 (19:05 +0000)]
More conversions from class to namespace DataOutBase. Reindent these files.
git-svn-id: https://svn.dealii.org/trunk@32375
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maier [Sun, 2 Feb 2014 11:39:36 +0000 (11:39 +0000)]
Bugfixes: Make compilation of bundled libraries work again
git-svn-id: https://svn.dealii.org/trunk@32374
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maier [Sun, 2 Feb 2014 00:31:01 +0000 (00:31 +0000)]
I have no idea where this cache invalidation comes from - disable for now
git-svn-id: https://svn.dealii.org/trunk@32373
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maier [Sun, 2 Feb 2014 00:10:11 +0000 (00:10 +0000)]
CMake: Bugfix: Get the caching right in FindPETSC.cmake and
FindTRILINOS.cmake
git-svn-id: https://svn.dealii.org/trunk@32372
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maier [Sat, 1 Feb 2014 21:58:11 +0000 (21:58 +0000)]
Well, well. Also adjust the project configuration...
git-svn-id: https://svn.dealii.org/trunk@32371
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maier [Sat, 1 Feb 2014 21:53:31 +0000 (21:53 +0000)]
CMake: Break everything (tm)
- Provide a quick sanity check to test the final link interface.
git-svn-id: https://svn.dealii.org/trunk@32370
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maier [Sat, 1 Feb 2014 21:53:29 +0000 (21:53 +0000)]
CMake: Break everything (tm)
- Do not record full path of system libraries and use reduced link line
instead.
git-svn-id: https://svn.dealii.org/trunk@32369
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maier [Sat, 1 Feb 2014 21:53:24 +0000 (21:53 +0000)]
CMake: Break everything (tm).
- Redesign complete feature configuration process
git-svn-id: https://svn.dealii.org/trunk@32368
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bangerth [Sat, 1 Feb 2014 13:18:44 +0000 (13:18 +0000)]
Remove the awkward private inheritance from DataOutBase to DataOutInterface that has tripped up virtually every compiler we have ever tried. Instead, make DataOutBase a namespace.
git-svn-id: https://svn.dealii.org/trunk@32367
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kronbichler [Sat, 1 Feb 2014 08:16:52 +0000 (08:16 +0000)]
Mark new functions in header file as inline
git-svn-id: https://svn.dealii.org/trunk@32365
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steigemann [Sat, 1 Feb 2014 08:04:39 +0000 (08:04 +0000)]
new tests for ParameterHandler print_parameters_section
git-svn-id: https://svn.dealii.org/trunk@32364
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steigemann [Sat, 1 Feb 2014 07:57:30 +0000 (07:57 +0000)]
added a new flag to ParameterHandler::print_parameters_section for printing all higher subsection elements needed for XML output
git-svn-id: https://svn.dealii.org/trunk@32363
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kronbichler [Fri, 31 Jan 2014 20:07:22 +0000 (20:07 +0000)]
Make compile again
git-svn-id: https://svn.dealii.org/trunk@32362
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kronbichler [Fri, 31 Jan 2014 20:03:54 +0000 (20:03 +0000)]
Add tests
git-svn-id: https://svn.dealii.org/trunk@32361
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bangerth [Fri, 31 Jan 2014 19:44:13 +0000 (19:44 +0000)]
Make all instances of a template a friend function, in hopes to make
MS VC++ happy.
git-svn-id: https://svn.dealii.org/trunk@32360
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kronbichler [Fri, 31 Jan 2014 19:05:03 +0000 (19:05 +0000)]
Better way for specifying deal.II namespace.
git-svn-id: https://svn.dealii.org/trunk@32359
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kronbichler [Fri, 31 Jan 2014 19:03:37 +0000 (19:03 +0000)]
Add similar interface for copying from a Trilinos MPI vector as for Petsc.
git-svn-id: https://svn.dealii.org/trunk@32358
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kronbichler [Fri, 31 Jan 2014 14:11:14 +0000 (14:11 +0000)]
Add test
git-svn-id: https://svn.dealii.org/trunk@32357
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heister [Fri, 31 Jan 2014 14:05:39 +0000 (14:05 +0000)]
avoid fmin with unsigned int because it is not defined for ints before c++11
git-svn-id: https://svn.dealii.org/trunk@32356
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kronbichler [Fri, 31 Jan 2014 13:24:30 +0000 (13:24 +0000)]
Patch by Ben Thompson: copy petsc vector to deal.II parallel distributed vector
git-svn-id: https://svn.dealii.org/trunk@32355
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kronbichler [Fri, 31 Jan 2014 07:33:59 +0000 (07:33 +0000)]
Prior to C++11, fmax is a C99 function and not in namespace std
git-svn-id: https://svn.dealii.org/trunk@32354
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kronbichler [Fri, 31 Jan 2014 07:20:16 +0000 (07:20 +0000)]
Prior to C++11, fmin is a C99 function and not in namespace std
git-svn-id: https://svn.dealii.org/trunk@32353
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bangerth [Fri, 31 Jan 2014 03:34:47 +0000 (03:34 +0000)]
Add tests for bug report #182. At least the _28 test doesn't currently work and I will get to it over the weekend at the latest.
git-svn-id: https://svn.dealii.org/trunk@32352
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turcksin [Fri, 31 Jan 2014 01:32:15 +0000 (01:32 +0000)]
Add a const in sparse_matrix.h and an include in sparsity_tools.cc to help Visual Studio.
git-svn-id: https://svn.dealii.org/trunk@32351
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turcksin [Fri, 31 Jan 2014 00:04:32 +0000 (00:04 +0000)]
Add several typenames and change min to fmin, max to fmax to help Visual Studio.
git-svn-id: https://svn.dealii.org/trunk@32350
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bangerth [Thu, 30 Jan 2014 23:08:09 +0000 (23:08 +0000)]
Look through the documentation at a couple of places.
git-svn-id: https://svn.dealii.org/trunk@32349
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bangerth [Thu, 30 Jan 2014 21:53:29 +0000 (21:53 +0000)]
Link to another paper on best practices, as well as the video lectures.
git-svn-id: https://svn.dealii.org/trunk@32348
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bangerth [Thu, 30 Jan 2014 17:23:49 +0000 (17:23 +0000)]
Add a few statements on running stuff in parallel with MPI.
git-svn-id: https://svn.dealii.org/trunk@32347
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bangerth [Wed, 29 Jan 2014 16:38:51 +0000 (16:38 +0000)]
Initialize a variable and explain it.
git-svn-id: https://svn.dealii.org/trunk@32345
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bangerth [Wed, 29 Jan 2014 12:53:51 +0000 (12:53 +0000)]
Add last name of contributor Mihai.
git-svn-id: https://svn.dealii.org/trunk@32344
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maier [Tue, 28 Jan 2014 19:01:32 +0000 (19:01 +0000)]
CMake: Start refactoring of REGISTER_FEATURE
git-svn-id: https://svn.dealii.org/trunk@32339
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maier [Tue, 28 Jan 2014 19:01:29 +0000 (19:01 +0000)]
CMake: Refactor detailed and summary log creation
git-svn-id: https://svn.dealii.org/trunk@32338
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heister [Tue, 28 Jan 2014 19:00:20 +0000 (19:00 +0000)]
step-1: add some text output to the screen
git-svn-id: https://svn.dealii.org/trunk@32337
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maier [Tue, 28 Jan 2014 18:58:22 +0000 (18:58 +0000)]
CMake: Refactor list deduplication into a macro
git-svn-id: https://svn.dealii.org/trunk@32336
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maier [Tue, 28 Jan 2014 13:29:02 +0000 (13:29 +0000)]
Testsuite: Bugfix: Do not copy CMakeCache.txt and CMakeFiles for build tests
git-svn-id: https://svn.dealii.org/trunk@32332
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felix.gruber [Tue, 28 Jan 2014 09:35:21 +0000 (09:35 +0000)]
fix indentation
git-svn-id: https://svn.dealii.org/trunk@32330
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heister [Mon, 27 Jan 2014 20:16:24 +0000 (20:16 +0000)]
fix typo
git-svn-id: https://svn.dealii.org/trunk@32328
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bangerth [Mon, 27 Jan 2014 16:42:35 +0000 (16:42 +0000)]
Avoid an if() in optimized mode by writing the Assert in a more clever way.
git-svn-id: https://svn.dealii.org/trunk@32327
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bangerth [Mon, 27 Jan 2014 03:15:11 +0000 (03:15 +0000)]
Also list where results show up.
git-svn-id: https://svn.dealii.org/trunk@32324
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bangerth [Mon, 27 Jan 2014 02:53:03 +0000 (02:53 +0000)]
Fix obvious oversights in the previous commit...
git-svn-id: https://svn.dealii.org/trunk@32323
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bangerth [Mon, 27 Jan 2014 00:11:56 +0000 (00:11 +0000)]
Document running the testsuite for coverage information.
git-svn-id: https://svn.dealii.org/trunk@32322
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bangerth [Sun, 26 Jan 2014 23:58:30 +0000 (23:58 +0000)]
Provide a couple of constructors that are never called but for which
we apparently need definitions when running the testsuite for
coverage.
git-svn-id: https://svn.dealii.org/trunk@32321
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heister [Sun, 26 Jan 2014 23:41:36 +0000 (23:41 +0000)]
leave a note on how to start step-32
git-svn-id: https://svn.dealii.org/trunk@32320
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bangerth [Sun, 26 Jan 2014 19:36:28 +0000 (19:36 +0000)]
Disallow calling certain functions that have to do with active_fe_index on cells that are not in fact active. Fix the various places where we used to do so (and which probably produced something that made not much sense).
git-svn-id: https://svn.dealii.org/trunk@32318
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bangerth [Sun, 26 Jan 2014 19:36:10 +0000 (19:36 +0000)]
Disallow calling certain functions that have to do with active_fe_index on cells that are not in fact active. Fix the various places where we used to do so (and which probably produced something that made not much sense).
git-svn-id: https://svn.dealii.org/trunk@32317
0785d39b -7218-0410-832d-
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bangerth [Sun, 26 Jan 2014 18:47:48 +0000 (18:47 +0000)]
Fix a forgotten case with FENothing (thanks to a testcase by Krzysztof Bzowski).
git-svn-id: https://svn.dealii.org/trunk@32316
0785d39b -7218-0410-832d-
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maier [Sun, 26 Jan 2014 14:55:30 +0000 (14:55 +0000)]
CMake: Bugfix: Strip leading and trailing whitespace from linker flags in
order to not confuse cmake-2.8.8
git-svn-id: https://svn.dealii.org/trunk@32315
0785d39b -7218-0410-832d-
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maier [Sun, 26 Jan 2014 11:44:31 +0000 (11:44 +0000)]
CMake: Improve error message for invalid user provided CXX and LD flags
git-svn-id: https://svn.dealii.org/trunk@32314
0785d39b -7218-0410-832d-
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bangerth [Sat, 25 Jan 2014 14:43:00 +0000 (14:43 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@32313
0785d39b -7218-0410-832d-
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bangerth [Sat, 25 Jan 2014 13:20:09 +0000 (13:20 +0000)]
More cleanups in SolutionTransfer.
git-svn-id: https://svn.dealii.org/trunk@32312
0785d39b -7218-0410-832d-
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maier [Sat, 25 Jan 2014 09:53:35 +0000 (09:53 +0000)]
CMake: Bugfix: Set a compiler option for the correct build type
git-svn-id: https://svn.dealii.org/trunk@32311
0785d39b -7218-0410-832d-
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bangerth [Sat, 25 Jan 2014 04:11:46 +0000 (04:11 +0000)]
Clean up a good amount of code. In particular, do not try to access fe_indices of cells that are not active, since no finite element space is associated with them.
git-svn-id: https://svn.dealii.org/trunk@32310
0785d39b -7218-0410-832d-
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bangerth [Sat, 25 Jan 2014 04:09:13 +0000 (04:09 +0000)]
Avoid directly accessing the active_fe_index of a cell that is at this
point no longer active.
git-svn-id: https://svn.dealii.org/trunk@32309
0785d39b -7218-0410-832d-
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bangerth [Sat, 25 Jan 2014 02:08:49 +0000 (02:08 +0000)]
Remove a hunk of code that was forgotten in r32297.
git-svn-id: https://svn.dealii.org/trunk@32308
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heister [Fri, 24 Jan 2014 23:18:58 +0000 (23:18 +0000)]
add script to check doxygen formatting
git-svn-id: https://svn.dealii.org/trunk@32307
0785d39b -7218-0410-832d-
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