]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
4 years agorefactor to use shared pointer
Matthias Maier [Fri, 3 Apr 2020 03:35:45 +0000 (22:35 -0500)]
refactor to use shared pointer

4 years agoRefactor output thread; only perform IO asynchronously
Matthias Maier [Thu, 2 Apr 2020 22:14:30 +0000 (17:14 -0500)]
Refactor output thread; only perform IO asynchronously

4 years agoadd an configuration option
Matthias Maier [Thu, 2 Apr 2020 21:21:10 +0000 (16:21 -0500)]
add an configuration option

4 years agoRevert "remove asynchronous IO mechanism"
Matthias Maier [Sat, 7 Mar 2020 20:19:59 +0000 (14:19 -0600)]
Revert "remove asynchronous IO mechanism"

This reverts commit 7980483d1654923c44f67491699b82e6b5ce4e51.

4 years agoMerge pull request #9796 from kronbichler/improve_quarter_hyper_ball
Daniel Arndt [Sat, 4 Apr 2020 04:24:02 +0000 (00:24 -0400)]
Merge pull request #9796 from kronbichler/improve_quarter_hyper_ball

Improve mesh quality of quarter hyper ball

4 years agoMerge pull request #9801 from masterleinad/remove_pointer_matrix
Daniel Arndt [Sat, 4 Apr 2020 04:04:34 +0000 (00:04 -0400)]
Merge pull request #9801 from masterleinad/remove_pointer_matrix

Remove PointerMatrix*

4 years agoMerge pull request #9758 from peterrum/parallel_namespace_problem
Daniel Arndt [Fri, 3 Apr 2020 21:03:45 +0000 (17:03 -0400)]
Merge pull request #9758 from peterrum/parallel_namespace_problem

Explicitly spell dealii::parallel in multiple places

4 years agoRemove PointerMatrix* 9801/head
Daniel Arndt [Wed, 1 Apr 2020 18:54:51 +0000 (14:54 -0400)]
Remove PointerMatrix*

4 years agoChangelog 9796/head
Martin Kronbichler [Thu, 2 Apr 2020 16:42:19 +0000 (18:42 +0200)]
Changelog

4 years agoAdd pictures of new mesh
Martin Kronbichler [Thu, 2 Apr 2020 16:42:08 +0000 (18:42 +0200)]
Add pictures of new mesh

4 years agoImprove mesh quality of quarter hyper ball
Martin Kronbichler [Thu, 2 Apr 2020 12:20:44 +0000 (14:20 +0200)]
Improve mesh quality of quarter hyper ball

4 years agoMerge pull request #9787 from luca-heltai/base64-encode-decode
Daniel Arndt [Fri, 3 Apr 2020 19:00:36 +0000 (15:00 -0400)]
Merge pull request #9787 from luca-heltai/base64-encode-decode

Encode and decode Base64 format.

4 years agoMerge pull request #9800 from masterleinad/minimize_boost_geometry
Daniel Arndt [Fri, 3 Apr 2020 16:58:03 +0000 (12:58 -0400)]
Merge pull request #9800 from masterleinad/minimize_boost_geometry

Minimize boost/geometry.h includes

4 years agoExplicitly spell dealii::parallel in multiple places 9758/head
Peter Munch [Sat, 28 Mar 2020 12:52:57 +0000 (13:52 +0100)]
Explicitly spell dealii::parallel in multiple places

4 years agoRemoved old Base64 code from data_out_base.cc 9787/head
Luca Heltai [Fri, 3 Apr 2020 14:52:48 +0000 (16:52 +0200)]
Removed old Base64 code from data_out_base.cc

4 years agoEncode and decode Base64 format.
Luca Heltai [Wed, 1 Apr 2020 09:14:21 +0000 (11:14 +0200)]
Encode and decode Base64 format.

4 years agoMinimize boost/geometry.h includes 9800/head
Daniel Arndt [Thu, 2 Apr 2020 17:55:33 +0000 (13:55 -0400)]
Minimize boost/geometry.h includes

4 years agoMerge pull request #9786 from masterleinad/remove_filteredmatrix
Martin Kronbichler [Thu, 2 Apr 2020 17:23:00 +0000 (19:23 +0200)]
Merge pull request #9786 from masterleinad/remove_filteredmatrix

Remove deprecated class FilteredMatrix

4 years agoMerge pull request #9791 from peterrum/DoFAccessor_use_hp_cache
Wolfgang Bangerth [Thu, 2 Apr 2020 15:36:01 +0000 (17:36 +0200)]
Merge pull request #9791 from peterrum/DoFAccessor_use_hp_cache

Simplify DoFCellAccessor::distribute_local_to_global()

4 years agoSimplify DoFCellAccessor::distribute_local_to_global() 9791/head
Peter Munch [Wed, 1 Apr 2020 23:16:31 +0000 (01:16 +0200)]
Simplify DoFCellAccessor::distribute_local_to_global()

4 years agoMerge pull request #9789 from tjhei/point_no_boost_all
Daniel Arndt [Thu, 2 Apr 2020 00:09:03 +0000 (20:09 -0400)]
Merge pull request #9789 from tjhei/point_no_boost_all

remove boost/geometry.hpp from Point

4 years agoMerge pull request #9783 from peterrum/ph_pattern_segfault
Daniel Arndt [Wed, 1 Apr 2020 22:05:54 +0000 (18:05 -0400)]
Merge pull request #9783 from peterrum/ph_pattern_segfault

Pass ExcNoMatch the description directly

4 years agoremove boost/geometry.hpp from Point 9789/head
Timo Heister [Wed, 1 Apr 2020 19:56:39 +0000 (15:56 -0400)]
remove boost/geometry.hpp from Point

We are including point.h in large parts of deal.II and the
boost/geometry/ header is a shortcut to include all of boost geometry.
Instead, only selectively include the parts we actually need. This
should speed up compilation of deal.II.

4 years agoMerge pull request #9785 from masterleinad/remove_swappable_vector
Daniel Arndt [Wed, 1 Apr 2020 16:43:31 +0000 (12:43 -0400)]
Merge pull request #9785 from masterleinad/remove_swappable_vector

Remove SwappableVector

4 years agoRemove SwappableVector 9785/head
Daniel Arndt [Tue, 31 Mar 2020 23:38:45 +0000 (19:38 -0400)]
Remove SwappableVector

4 years agoRemove deprecated class FilteredMatrix 9786/head
Daniel Arndt [Tue, 31 Mar 2020 00:20:57 +0000 (20:20 -0400)]
Remove deprecated class FilteredMatrix

4 years agoMerge pull request #9767 from kronbichler/mapping_info_output_variants
Daniel Arndt [Wed, 1 Apr 2020 12:39:38 +0000 (08:39 -0400)]
Merge pull request #9767 from kronbichler/mapping_info_output_variants

Add output variants for new MF::MappingInfo test

4 years agoMerge pull request #9784 from masterleinad/constructor_eigenvalueinformation
Martin Kronbichler [Wed, 1 Apr 2020 04:59:45 +0000 (06:59 +0200)]
Merge pull request #9784 from masterleinad/constructor_eigenvalueinformation

Implement default initializer for EigenvalueInformation

4 years agoPass ExcNoMatch the description directly 9783/head
Peter Munch [Tue, 31 Mar 2020 17:31:29 +0000 (19:31 +0200)]
Pass ExcNoMatch the description directly

4 years agoImplement default initializer for EigenvalueInformation 9784/head
Daniel Arndt [Tue, 31 Mar 2020 17:49:26 +0000 (13:49 -0400)]
Implement default initializer for EigenvalueInformation

4 years agoMerge pull request #9490 from simonsticko/add_hyper_cube
David Wells [Tue, 31 Mar 2020 12:42:20 +0000 (08:42 -0400)]
Merge pull request #9490 from simonsticko/add_hyper_cube

Add header quadrature_generator.h

4 years agoAdd header quadrature_generator.h 9490/head
Simon Sticko [Thu, 6 Feb 2020 16:26:04 +0000 (17:26 +0100)]
Add header quadrature_generator.h

Add a header to be used for implementing a QuadratureGenerator class, which
should generate immersed quadrature rules for the different regions of a cell
intersected by the zero contour of a level set function. Add a hypercube class
in a internal namespace QuadratureGeneratorImplementation, which is needed to
implement the underlying algorithm.

4 years agoMerge pull request #9781 from kronbichler/bug_mg_ghost_layer_periodic
David Wells [Mon, 30 Mar 2020 22:55:28 +0000 (18:55 -0400)]
Merge pull request #9781 from kronbichler/bug_mg_ghost_layer_periodic

Fix a bug in mg ghost layer with periodicity and n_levels=1

4 years agoMerge pull request #9780 from bangerth/26
Daniel Arndt [Mon, 30 Mar 2020 22:10:40 +0000 (18:10 -0400)]
Merge pull request #9780 from bangerth/26

Output time and time step in step-26.

4 years agoMerge pull request #9779 from masterleinad/remove_mg_set_debug
Martin Kronbichler [Mon, 30 Mar 2020 19:11:51 +0000 (21:11 +0200)]
Merge pull request #9779 from masterleinad/remove_mg_set_debug

Remove Multigrid::set_debug()

4 years agoMerge pull request #9668 from agrayver/remove_doc_copypaste
Martin Kronbichler [Mon, 30 Mar 2020 18:24:33 +0000 (20:24 +0200)]
Merge pull request #9668 from agrayver/remove_doc_copypaste

Use copydoc for Python wrappers

4 years agoChangelog 9781/head
Martin Kronbichler [Mon, 30 Mar 2020 17:15:44 +0000 (19:15 +0200)]
Changelog

4 years agoTest case
Martin Kronbichler [Mon, 30 Mar 2020 17:13:23 +0000 (19:13 +0200)]
Test case

4 years agoMake sure periodicity is set before constructing hierarchy
Martin Kronbichler [Mon, 30 Mar 2020 17:13:08 +0000 (19:13 +0200)]
Make sure periodicity is set before constructing hierarchy

4 years agoUpdate a changelog entry. 9780/head
Wolfgang Bangerth [Mon, 30 Mar 2020 17:02:00 +0000 (11:02 -0600)]
Update a changelog entry.

4 years agoOutput time and time step in step-26.
Wolfgang Bangerth [Mon, 30 Mar 2020 17:00:42 +0000 (11:00 -0600)]
Output time and time step in step-26.

4 years agoChange log entry 9779/head
Daniel Arndt [Mon, 30 Mar 2020 16:33:42 +0000 (12:33 -0400)]
Change log entry

4 years agoUpdate tests
Daniel Arndt [Mon, 30 Mar 2020 16:29:40 +0000 (12:29 -0400)]
Update tests

4 years agoUse signals in Multigrid::level_step()
Daniel Arndt [Mon, 30 Mar 2020 16:28:49 +0000 (12:28 -0400)]
Use signals in Multigrid::level_step()

4 years agoMerge pull request #9773 from peterrum/paths_fix_order
Wolfgang Bangerth [Mon, 30 Mar 2020 15:06:49 +0000 (17:06 +0200)]
Merge pull request #9773 from peterrum/paths_fix_order

Fix order of module graphs

4 years agoMerge pull request #9775 from kronbichler/fix_utilities_pow
Daniel Arndt [Mon, 30 Mar 2020 13:40:06 +0000 (09:40 -0400)]
Merge pull request #9775 from kronbichler/fix_utilities_pow

Avoid unnecessary integer overflow in Utilities::pow()

4 years agoMerge pull request #9772 from bangerth/graph
Timo Heister [Mon, 30 Mar 2020 13:35:40 +0000 (09:35 -0400)]
Merge pull request #9772 from bangerth/graph

Further try and disentangle the tutorial graph a bit.

4 years agoMerge pull request #9776 from kronbichler/typo_mapping_info
Daniel Arndt [Mon, 30 Mar 2020 13:09:07 +0000 (09:09 -0400)]
Merge pull request #9776 from kronbichler/typo_mapping_info

MappingInfo: Use correct update flags for face quadrature fields

4 years agoMappingInfo: Use correct update flags for face quadrature fields 9776/head
Martin Kronbichler [Mon, 30 Mar 2020 06:30:35 +0000 (08:30 +0200)]
MappingInfo: Use correct update flags for face quadrature fields

4 years agoTwo test cases 9775/head
Martin Kronbichler [Mon, 30 Mar 2020 06:21:46 +0000 (08:21 +0200)]
Two test cases

4 years agoAvoid unnecessary integer overflow of Utilities::pow()
Martin Kronbichler [Mon, 30 Mar 2020 06:21:26 +0000 (08:21 +0200)]
Avoid unnecessary integer overflow of Utilities::pow()

4 years agoFix order of module graphs 9773/head
Peter Munch [Sun, 29 Mar 2020 21:55:16 +0000 (23:55 +0200)]
Fix order of module graphs

4 years agoMerge pull request #9769 from kronbichler/fix_mapping_fe_field_similarity
Martin Kronbichler [Mon, 30 Mar 2020 05:15:36 +0000 (07:15 +0200)]
Merge pull request #9769 from kronbichler/fix_mapping_fe_field_similarity

Fix mapping fe field similarity

4 years agoMerge pull request #9770 from bangerth/67
Martin Kronbichler [Mon, 30 Mar 2020 04:51:23 +0000 (06:51 +0200)]
Merge pull request #9770 from bangerth/67

Also make step-67 depend on step-40.

4 years agoTest case for MappingManifold 9769/head
Martin Kronbichler [Sun, 29 Mar 2020 18:08:12 +0000 (20:08 +0200)]
Test case for MappingManifold

4 years agochangelog
Martin Kronbichler [Sun, 29 Mar 2020 13:58:46 +0000 (15:58 +0200)]
changelog

4 years agoTestcase
Martin Kronbichler [Sun, 29 Mar 2020 13:58:39 +0000 (15:58 +0200)]
Testcase

4 years agoRemove cell similarity for MappingFEField as we cannot know that
Martin Kronbichler [Sun, 29 Mar 2020 13:58:20 +0000 (15:58 +0200)]
Remove cell similarity for MappingFEField as we cannot know that

4 years agoMerge pull request #9000 from bangerth/nedelec
Martin Kronbichler [Sun, 29 Mar 2020 17:39:57 +0000 (19:39 +0200)]
Merge pull request #9000 from bangerth/nedelec

Fix a bug with a combination Q2 x Nedelec element.

4 years agoMerge pull request #9771 from bangerth/doc
Martin Kronbichler [Sun, 29 Mar 2020 17:25:07 +0000 (19:25 +0200)]
Merge pull request #9771 from bangerth/doc

Fix broken documentation.

4 years agoFurther try and disentangle the tutorial graph a bit. 9772/head
Wolfgang Bangerth [Sun, 29 Mar 2020 17:15:04 +0000 (11:15 -0600)]
Further try and disentangle the tutorial graph a bit.

4 years agoFix broken documentation. 9771/head
Wolfgang Bangerth [Sun, 29 Mar 2020 16:48:15 +0000 (10:48 -0600)]
Fix broken documentation.

This was apparently mangled when we ran clang-indent the first time.

4 years agoAlso make step-67 depend on step-40. 9770/head
Wolfgang Bangerth [Sun, 29 Mar 2020 16:45:42 +0000 (10:45 -0600)]
Also make step-67 depend on step-40.

Its parallel node step-69 does, and it only seems reasonable to retain that symmetry.

4 years agoMerge pull request #9765 from rezarastak/table_handler_doc
Wolfgang Bangerth [Sun, 29 Mar 2020 16:09:54 +0000 (18:09 +0200)]
Merge pull request #9765 from rezarastak/table_handler_doc

Minor documentation changes for TableHandler

4 years agoMerge pull request #9764 from peterrum/pow_t
Wolfgang Bangerth [Sun, 29 Mar 2020 16:07:40 +0000 (18:07 +0200)]
Merge pull request #9764 from peterrum/pow_t

Template Utilities::pow()

4 years agoAnd again the fix for the project_bv_curl_conf_04 test 9000/head
Winnifried Wollner [Mon, 9 Mar 2020 13:18:33 +0000 (14:18 +0100)]
And again the fix for the project_bv_curl_conf_04 test

4 years agoRemove Multigrid::set_debug
Daniel Arndt [Sun, 29 Mar 2020 13:37:39 +0000 (09:37 -0400)]
Remove Multigrid::set_debug

4 years agoMerge pull request #9766 from kronbichler/fix_tutorial_graph
Daniel Arndt [Sun, 29 Mar 2020 13:25:31 +0000 (09:25 -0400)]
Merge pull request #9766 from kronbichler/fix_tutorial_graph

Follow-up to step-67: fix tutorial graph

4 years agoAdd output variants for new MF::MappingInfo test 9767/head
Martin Kronbichler [Sun, 29 Mar 2020 11:29:04 +0000 (13:29 +0200)]
Add output variants for new MF::MappingInfo test

4 years agoFollow-up to step-67: fix tutorial graph 9766/head
Martin Kronbichler [Sun, 29 Mar 2020 11:17:32 +0000 (13:17 +0200)]
Follow-up to step-67: fix tutorial graph

4 years agoMinor documentation changes for TableHandler 9765/head
Reza Rastak [Sun, 29 Mar 2020 05:13:50 +0000 (22:13 -0700)]
Minor documentation changes for TableHandler

4 years agoMerge pull request #9763 from kronbichler/avoid_n_array_elements
Daniel Arndt [Sun, 29 Mar 2020 01:30:57 +0000 (21:30 -0400)]
Merge pull request #9763 from kronbichler/avoid_n_array_elements

Avoid deprecated VectorizedArray::n_array_elements

4 years agoTemplate Utilities::pow() 9764/head
Peter Munch [Sat, 28 Mar 2020 22:05:21 +0000 (23:05 +0100)]
Template Utilities::pow()

4 years agoAvoid deprecated VectorizedArray::n_array_elements 9763/head
Martin Kronbichler [Sat, 28 Mar 2020 21:56:53 +0000 (22:56 +0100)]
Avoid deprecated VectorizedArray::n_array_elements

4 years agoMerge pull request #8319 from kronbichler/step-67
Wolfgang Bangerth [Sat, 28 Mar 2020 21:16:10 +0000 (22:16 +0100)]
Merge pull request #8319 from kronbichler/step-67

step-67: explicit time integration with matrix-free implementations

4 years agoMerge pull request #9761 from masterleinad/remove_block_matrix_array
Martin Kronbichler [Sat, 28 Mar 2020 20:09:45 +0000 (21:09 +0100)]
Merge pull request #9761 from masterleinad/remove_block_matrix_array

Delete BlockMatrixArray and MeanValueFilter

4 years agoMerge pull request #9755 from bangerth/graphs
Martin Kronbichler [Sat, 28 Mar 2020 17:58:17 +0000 (18:58 +0100)]
Merge pull request #9755 from bangerth/graphs

Copy pieces of the module graph into some of the modules.

4 years agoMerge pull request #9759 from masterleinad/fix_dof_tools_12a
Martin Kronbichler [Sat, 28 Mar 2020 17:57:59 +0000 (18:57 +0100)]
Merge pull request #9759 from masterleinad/fix_dof_tools_12a

Fix failing test dof_tools_12a

4 years agoMerge pull request #9656 from kronbichler/mapping_q_optimize
Wolfgang Bangerth [Sat, 28 Mar 2020 17:03:45 +0000 (18:03 +0100)]
Merge pull request #9656 from kronbichler/mapping_q_optimize

Implement matrix-free evaluation of geometry for MF::MappingInfo

4 years agoChangelog 8319/head
Martin Kronbichler [Sat, 28 Mar 2020 16:23:58 +0000 (17:23 +0100)]
Changelog

4 years agoDelete BlockMatrixArray and MeanValueFilter 9761/head
Daniel Arndt [Thu, 26 Mar 2020 16:08:55 +0000 (12:08 -0400)]
Delete BlockMatrixArray and MeanValueFilter

4 years agoFix failing test dof_tools_12a 9759/head
Daniel Arndt [Sat, 28 Mar 2020 14:52:08 +0000 (10:52 -0400)]
Fix failing test dof_tools_12a

4 years agoChangelog 9656/head
Martin Kronbichler [Sat, 14 Mar 2020 21:57:25 +0000 (22:57 +0100)]
Changelog

4 years agoOne new test, one included in existing one
Martin Kronbichler [Sat, 14 Mar 2020 21:50:07 +0000 (22:50 +0100)]
One new test, one included in existing one

4 years agoImplement matrix-free evaluation of geometry for MF::MappingInfo
Martin Kronbichler [Fri, 13 Mar 2020 08:27:21 +0000 (09:27 +0100)]
Implement matrix-free evaluation of geometry for MF::MappingInfo

4 years agoInstantiate ShapeInfo for all vectorized arrays
Martin Kronbichler [Sat, 28 Mar 2020 14:33:45 +0000 (15:33 +0100)]
Instantiate ShapeInfo for all vectorized arrays

4 years agoFix Wolfgang's final comments
Martin Kronbichler [Sat, 28 Mar 2020 10:04:13 +0000 (11:04 +0100)]
Fix Wolfgang's final comments

4 years agoMerge pull request #5 from bangerth/step-67-3
Martin Kronbichler [Sat, 28 Mar 2020 06:57:08 +0000 (07:57 +0100)]
Merge pull request #5 from bangerth/step-67-3

My last changes to step-67.

4 years agoMerge pull request #9753 from masterleinad/remove_lapackfullmatrix_apply_lu_factorization
Martin Kronbichler [Sat, 28 Mar 2020 06:38:34 +0000 (07:38 +0100)]
Merge pull request #9753 from masterleinad/remove_lapackfullmatrix_apply_lu_factorization

Remove deprecated LAPACKFullMatrix::apply_lu_factorization

4 years agoMerge pull request #9754 from bangerth/52
Martin Kronbichler [Sat, 28 Mar 2020 06:37:51 +0000 (07:37 +0100)]
Merge pull request #9754 from bangerth/52

Also output the current time in .vtu files in step-52.

4 years agoCopy pieces of the module graph into some of the modules. 9755/head
Wolfgang Bangerth [Sat, 28 Mar 2020 03:41:53 +0000 (21:41 -0600)]
Copy pieces of the module graph into some of the modules.

For some modules, this patch copies a subset of the big module graph into the
module documentation, with the current module highlighted. This makes it
easier to see the connections between modules not just from the documentation
front page, but also from the individual modules.

4 years agoMerge pull request #9752 from masterleinad/remove_deprecated_set_manifold
Daniel Arndt [Sat, 28 Mar 2020 03:39:21 +0000 (23:39 -0400)]
Merge pull request #9752 from masterleinad/remove_deprecated_set_manifold

Remove Triangulation::set_manifold()

4 years agoAdd a changelog entry. 9754/head
Wolfgang Bangerth [Sat, 28 Mar 2020 03:12:10 +0000 (21:12 -0600)]
Add a changelog entry.

4 years agoAlso output the current time in .vtu files in step-52.
Wolfgang Bangerth [Sat, 28 Mar 2020 03:12:00 +0000 (21:12 -0600)]
Also output the current time in .vtu files in step-52.

4 years agoLink to step-67.
Wolfgang Bangerth [Sat, 28 Mar 2020 00:00:31 +0000 (18:00 -0600)]
Link to step-67.

4 years agoLink to step-67 and 69.
Wolfgang Bangerth [Sat, 28 Mar 2020 00:00:18 +0000 (18:00 -0600)]
Link to step-67 and 69.

4 years agoBe pedantically correct when looping over cells.
Wolfgang Bangerth [Sat, 28 Mar 2020 00:01:33 +0000 (18:01 -0600)]
Be pedantically correct when looping over cells.

4 years agoMore work on the .cc.
Wolfgang Bangerth [Fri, 27 Mar 2020 15:48:54 +0000 (09:48 -0600)]
More work on the .cc.

4 years agoRemove deprecated LAPACKFullMatrix::apply_lu_factorization 9753/head
Daniel Arndt [Fri, 27 Mar 2020 20:55:36 +0000 (16:55 -0400)]
Remove deprecated LAPACKFullMatrix::apply_lu_factorization

4 years agoMerge pull request #9750 from masterleinad/remove_deprecated_mg
Martin Kronbichler [Fri, 27 Mar 2020 19:15:21 +0000 (20:15 +0100)]
Merge pull request #9750 from masterleinad/remove_deprecated_mg

Remove deprecated Multigrid related constructors and functions


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