]>
https://gitweb.dealii.org/ - dealii-svn.git/log
bangerth [Mon, 23 Nov 2009 04:45:01 +0000 (04:45 +0000)]
In n_active_cells(), use the cached values.
git-svn-id: https://svn.dealii.org/trunk@20150
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bangerth [Mon, 23 Nov 2009 04:06:17 +0000 (04:06 +0000)]
Cache Triangulation::n_levels().
git-svn-id: https://svn.dealii.org/trunk@20149
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kronbichler [Mon, 23 Nov 2009 02:42:08 +0000 (02:42 +0000)]
Fix one more output.
git-svn-id: https://svn.dealii.org/trunk@20148
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kronbichler [Mon, 23 Nov 2009 02:35:34 +0000 (02:35 +0000)]
Fix some compiling problems. Fix sparse matrix iterator.
git-svn-id: https://svn.dealii.org/trunk@20147
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kronbichler [Mon, 23 Nov 2009 02:35:00 +0000 (02:35 +0000)]
Cleanup Trilinos tests.
git-svn-id: https://svn.dealii.org/trunk@20146
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kronbichler [Sun, 22 Nov 2009 15:46:46 +0000 (15:46 +0000)]
Remove a few compiler warnings.
git-svn-id: https://svn.dealii.org/trunk@20145
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kronbichler [Thu, 19 Nov 2009 20:48:41 +0000 (20:48 +0000)]
Can use a smarter process for creating an IndexSet. Use this in step-32. Provide initializations of block vectors and matrices with std::vector<IndexSet>.
git-svn-id: https://svn.dealii.org/trunk@20140
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bangerth [Thu, 19 Nov 2009 04:51:25 +0000 (04:51 +0000)]
Add missing include file.
git-svn-id: https://svn.dealii.org/trunk@20138
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bangerth [Thu, 19 Nov 2009 04:25:56 +0000 (04:25 +0000)]
Another test.
git-svn-id: https://svn.dealii.org/trunk@20137
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bangerth [Thu, 19 Nov 2009 04:20:31 +0000 (04:20 +0000)]
IndexSet::operator==/!= and operator &.
git-svn-id: https://svn.dealii.org/trunk@20136
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bangerth [Thu, 19 Nov 2009 04:19:56 +0000 (04:19 +0000)]
A simpler way to deal with testing a file's existence.
git-svn-id: https://svn.dealii.org/trunk@20135
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bangerth [Thu, 19 Nov 2009 01:17:26 +0000 (01:17 +0000)]
Add parentheses around expressions to avoid warning.
git-svn-id: https://svn.dealii.org/trunk@20134
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kronbichler [Thu, 19 Nov 2009 01:15:06 +0000 (01:15 +0000)]
Forgot to fix one more problem.
git-svn-id: https://svn.dealii.org/trunk@20133
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kronbichler [Thu, 19 Nov 2009 01:08:24 +0000 (01:08 +0000)]
Avoid compile problem with std::pow by static_cast of the exponent to int.
git-svn-id: https://svn.dealii.org/trunk@20132
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bangerth [Wed, 18 Nov 2009 19:09:57 +0000 (19:09 +0000)]
Use numbers::PI instead of M_PI.
git-svn-id: https://svn.dealii.org/trunk@20130
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bangerth [Wed, 18 Nov 2009 18:38:41 +0000 (18:38 +0000)]
Add to xrefs.
git-svn-id: https://svn.dealii.org/trunk@20129
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kronbichler [Wed, 18 Nov 2009 16:58:22 +0000 (16:58 +0000)]
Include missing inline declaration of function.
git-svn-id: https://svn.dealii.org/trunk@20128
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kronbichler [Wed, 18 Nov 2009 02:14:36 +0000 (02:14 +0000)]
Use IndexSet instead of Epetra_Map. This avoids using Trilinos-specific structures and makes the code more generic.
git-svn-id: https://svn.dealii.org/trunk@20127
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bangerth [Mon, 16 Nov 2009 14:19:50 +0000 (14:19 +0000)]
Use a different variable name to avoid hiding a member of the class (and
generating a warning with Sun CC).
git-svn-id: https://svn.dealii.org/trunk@20120
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bangerth [Mon, 16 Nov 2009 14:08:09 +0000 (14:08 +0000)]
Qualify fabs and sqrt properly with std::.
git-svn-id: https://svn.dealii.org/trunk@20119
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bangerth [Mon, 16 Nov 2009 14:07:23 +0000 (14:07 +0000)]
Include missing header file.
git-svn-id: https://svn.dealii.org/trunk@20118
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bangerth [Mon, 16 Nov 2009 14:05:26 +0000 (14:05 +0000)]
Qualify sscanf properly with std::.
git-svn-id: https://svn.dealii.org/trunk@20117
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bangerth [Mon, 16 Nov 2009 14:00:55 +0000 (14:00 +0000)]
Qualify fabs properly with std::.
git-svn-id: https://svn.dealii.org/trunk@20116
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bangerth [Mon, 16 Nov 2009 14:00:07 +0000 (14:00 +0000)]
Qualify fabs properly with std::.
git-svn-id: https://svn.dealii.org/trunk@20115
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kronbichler [Fri, 13 Nov 2009 22:07:05 +0000 (22:07 +0000)]
Clean up parts of the code.
git-svn-id: https://svn.dealii.org/trunk@20112
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kronbichler [Fri, 13 Nov 2009 21:13:36 +0000 (21:13 +0000)]
Cleanup Trilinos matrix: Small update in comments. Do not provide functions that cannot reasonably implemented like the check for symmetry. Implement memory consumption.
git-svn-id: https://svn.dealii.org/trunk@20111
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kronbichler [Fri, 13 Nov 2009 16:04:45 +0000 (16:04 +0000)]
Cleanup Trilinos sparsity pattern. Make Slepc compile again.
git-svn-id: https://svn.dealii.org/trunk@20108
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kronbichler [Fri, 13 Nov 2009 15:40:05 +0000 (15:40 +0000)]
Apply some updates that have been developed in the distributed grid branch: reinit option with IndexSet for Trilinos vectors and matrices. Rearrangements of header files for Trilinos and PETSc.
git-svn-id: https://svn.dealii.org/trunk@20107
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kronbichler [Thu, 12 Nov 2009 23:16:40 +0000 (23:16 +0000)]
Move Quadrature::get_points() ad Quadrature::get_weights() functions to .h-file. This resolves a linker problem.
git-svn-id: https://svn.dealii.org/trunk@20105
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young [Thu, 12 Nov 2009 16:23:25 +0000 (16:23 +0000)]
Fixed an error message. If SLEPc was not detected, we say so here
git-svn-id: https://svn.dealii.org/trunk@20098
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bangerth [Thu, 12 Nov 2009 14:56:26 +0000 (14:56 +0000)]
Add.
git-svn-id: https://svn.dealii.org/trunk@20094
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kronbichler [Wed, 11 Nov 2009 20:25:51 +0000 (20:25 +0000)]
Two tiny updates.
git-svn-id: https://svn.dealii.org/trunk@20091
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bangerth [Wed, 11 Nov 2009 16:03:55 +0000 (16:03 +0000)]
Add new tests. They may fail currently, but my machine is wiped clean and so I want to get them into the archive. Will look later what to do with them.
git-svn-id: https://svn.dealii.org/trunk@20090
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kanschat [Wed, 11 Nov 2009 13:23:09 +0000 (13:23 +0000)]
working on inconsistency
git-svn-id: https://svn.dealii.org/trunk@20089
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bangerth [Tue, 10 Nov 2009 19:31:33 +0000 (19:31 +0000)]
Add.
git-svn-id: https://svn.dealii.org/trunk@20082
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kanschat [Tue, 10 Nov 2009 04:11:40 +0000 (04:11 +0000)]
assemble global system without adaptivity
git-svn-id: https://svn.dealii.org/trunk@20081
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kanschat [Tue, 10 Nov 2009 02:27:08 +0000 (02:27 +0000)]
create directory and file for step 39
git-svn-id: https://svn.dealii.org/trunk@20080
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kronbichler [Mon, 9 Nov 2009 18:50:16 +0000 (18:50 +0000)]
Avoid double instantiations in case vector iterators are just plain pointers.
git-svn-id: https://svn.dealii.org/trunk@20078
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bangerth [Mon, 9 Nov 2009 17:20:07 +0000 (17:20 +0000)]
Add a test to see if vector iterators are just plain pointers.
git-svn-id: https://svn.dealii.org/trunk@20077
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bangerth [Mon, 9 Nov 2009 17:14:32 +0000 (17:14 +0000)]
Fix comment.
git-svn-id: https://svn.dealii.org/trunk@20076
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kronbichler [Mon, 9 Nov 2009 16:47:40 +0000 (16:47 +0000)]
Remove nonsensical "inline".
git-svn-id: https://svn.dealii.org/trunk@20075
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kronbichler [Mon, 9 Nov 2009 15:29:24 +0000 (15:29 +0000)]
Use similar names for entering/leaving sectios in TimerOutput as ParameterHandler does. Fix output issue.
git-svn-id: https://svn.dealii.org/trunk@20074
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kronbichler [Sun, 8 Nov 2009 20:12:21 +0000 (20:12 +0000)]
Avoid ambiguity in calculation of square root in Chebyshev preconditioner.
git-svn-id: https://svn.dealii.org/trunk@20073
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kronbichler [Sun, 8 Nov 2009 16:14:23 +0000 (16:14 +0000)]
Extend the results section. Show comparison with sparse matrices.
git-svn-id: https://svn.dealii.org/trunk@20072
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bangerth [Sun, 8 Nov 2009 04:56:36 +0000 (04:56 +0000)]
Clarify.
git-svn-id: https://svn.dealii.org/trunk@20071
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bangerth [Sun, 8 Nov 2009 04:55:50 +0000 (04:55 +0000)]
I liked the reference to the Copenhagen interpretation, so leave it in.
git-svn-id: https://svn.dealii.org/trunk@20070
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kronbichler [Sat, 7 Nov 2009 19:50:55 +0000 (19:50 +0000)]
Apply patch 20058 even on mainline.
git-svn-id: https://svn.dealii.org/trunk@20065
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kronbichler [Sat, 7 Nov 2009 15:57:11 +0000 (15:57 +0000)]
Generate output with the new implementation of inner products and norms.
git-svn-id: https://svn.dealii.org/trunk@20063
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kronbichler [Sat, 7 Nov 2009 15:32:50 +0000 (15:32 +0000)]
Remove register declaration of variables altogether. The compiler certainly knows that better than we.
git-svn-id: https://svn.dealii.org/trunk@20062
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kronbichler [Sat, 7 Nov 2009 14:59:09 +0000 (14:59 +0000)]
Do not use register declarations for variables that might be complex numbers. This avoids compiler warnings.
git-svn-id: https://svn.dealii.org/trunk@20061
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kronbichler [Sat, 7 Nov 2009 14:48:30 +0000 (14:48 +0000)]
Fix small heading issue with tt font.
git-svn-id: https://svn.dealii.org/trunk@20060
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young [Sat, 7 Nov 2009 12:38:52 +0000 (12:38 +0000)]
Added a comment pointing out the fact that step-36 is not MPI-ready and a note on how to make it so. Also fixed a bad reference in intro.
git-svn-id: https://svn.dealii.org/trunk@20059
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kronbichler [Fri, 6 Nov 2009 23:06:37 +0000 (23:06 +0000)]
Improve comments a bit further.
git-svn-id: https://svn.dealii.org/trunk@20057
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bangerth [Fri, 6 Nov 2009 22:58:57 +0000 (22:58 +0000)]
Remove a variable that is now no longer necessary.
git-svn-id: https://svn.dealii.org/trunk@20056
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bangerth [Fri, 6 Nov 2009 00:31:46 +0000 (00:31 +0000)]
Add one paragraph.
git-svn-id: https://svn.dealii.org/trunk@20053
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bangerth [Fri, 6 Nov 2009 00:00:42 +0000 (00:00 +0000)]
Avoid a warning.
git-svn-id: https://svn.dealii.org/trunk@20052
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bangerth [Thu, 5 Nov 2009 23:59:44 +0000 (23:59 +0000)]
Remove some code that didn't do anything.
git-svn-id: https://svn.dealii.org/trunk@20051
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bangerth [Thu, 5 Nov 2009 22:33:11 +0000 (22:33 +0000)]
Make sure we link with each object file only once.
git-svn-id: https://svn.dealii.org/trunk@20050
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bangerth [Thu, 5 Nov 2009 21:48:15 +0000 (21:48 +0000)]
Fix a problem when overloading first_cell/next_cell and giving cell data.
git-svn-id: https://svn.dealii.org/trunk@20044
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kronbichler [Thu, 5 Nov 2009 20:57:45 +0000 (20:57 +0000)]
Implement an improved = operator for distributed vectors that can handle different Epetra_Maps.
git-svn-id: https://svn.dealii.org/trunk@20043
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kronbichler [Thu, 5 Nov 2009 20:57:09 +0000 (20:57 +0000)]
A boundary mass matrix does not make much sense in 1D.
git-svn-id: https://svn.dealii.org/trunk@20042
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bangerth [Thu, 5 Nov 2009 20:25:27 +0000 (20:25 +0000)]
Compile numerics/vectors.cc first because it takes the longest.
git-svn-id: https://svn.dealii.org/trunk@20038
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kronbichler [Thu, 5 Nov 2009 19:53:22 +0000 (19:53 +0000)]
Fix distribute() function for distributed Trilinos vector.
git-svn-id: https://svn.dealii.org/trunk@20036
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kronbichler [Thu, 5 Nov 2009 19:17:35 +0000 (19:17 +0000)]
Qualify names to avoid ambiguity with namespace of same name.
git-svn-id: https://svn.dealii.org/trunk@20034
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kronbichler [Thu, 5 Nov 2009 15:49:21 +0000 (15:49 +0000)]
Name change in Vector class.
git-svn-id: https://svn.dealii.org/trunk@20030
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kronbichler [Thu, 5 Nov 2009 04:29:53 +0000 (04:29 +0000)]
The updated inner product produced some different results. Fix these tests.
git-svn-id: https://svn.dealii.org/trunk@20029
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kronbichler [Thu, 5 Nov 2009 01:14:00 +0000 (01:14 +0000)]
Change to an implementation that has reduced roundoff error accumulation for the inner products and norms. Do this by using nested blocking with post-update of the sum. Also change some of the parallelizations by not going through TBB in case we work with small vectors.
git-svn-id: https://svn.dealii.org/trunk@20028
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kronbichler [Thu, 5 Nov 2009 01:10:11 +0000 (01:10 +0000)]
Simplify the hp_constraints tests by using one single test for all features, not seven different ones. This reduces the time spent in the tests, since setting up the elements (which are the same for all the seven tests) takes most time usually. TODO: Could not reproduce OSX output. Need to verify results on the standard test machines, since i get slightly different results for the hp_constraints_q_03 and 07, as well as the two system variants.
git-svn-id: https://svn.dealii.org/trunk@20027
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kronbichler [Wed, 4 Nov 2009 22:15:50 +0000 (22:15 +0000)]
Fix a typo.
git-svn-id: https://svn.dealii.org/trunk@20024
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kronbichler [Wed, 4 Nov 2009 19:51:42 +0000 (19:51 +0000)]
Print out correct range in error message.
git-svn-id: https://svn.dealii.org/trunk@20022
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kronbichler [Tue, 3 Nov 2009 22:06:04 +0000 (22:06 +0000)]
Rename a variable.
git-svn-id: https://svn.dealii.org/trunk@20021
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kronbichler [Tue, 3 Nov 2009 21:29:21 +0000 (21:29 +0000)]
Remove unnecessary computation.
git-svn-id: https://svn.dealii.org/trunk@20020
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kronbichler [Tue, 3 Nov 2009 20:52:27 +0000 (20:52 +0000)]
Update documentation of what happens in the matrix-free function.
git-svn-id: https://svn.dealii.org/trunk@20019
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bangerth [Mon, 2 Nov 2009 21:41:09 +0000 (21:41 +0000)]
Fix typos.
git-svn-id: https://svn.dealii.org/trunk@20014
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kronbichler [Fri, 30 Oct 2009 08:11:34 +0000 (08:11 +0000)]
Need to modify the using ::gemm construct because of changed namespace in lapack_templates.
git-svn-id: https://svn.dealii.org/trunk@20012
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bangerth [Fri, 30 Oct 2009 05:41:43 +0000 (05:41 +0000)]
Do not use "using namespace dealii;" at the top of the file since this affects
everyone who includes this header file. That's not the intent...
git-svn-id: https://svn.dealii.org/trunk@20009
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kanschat [Fri, 30 Oct 2009 03:59:45 +0000 (03:59 +0000)]
test QProjector for Quadrature of dimension zero
git-svn-id: https://svn.dealii.org/trunk@20008
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kanschat [Fri, 30 Oct 2009 03:58:31 +0000 (03:58 +0000)]
implement quadrature of dimension zero
git-svn-id: https://svn.dealii.org/trunk@20007
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bangerth [Thu, 29 Oct 2009 05:18:04 +0000 (05:18 +0000)]
Improve error message.
git-svn-id: https://svn.dealii.org/trunk@20006
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bangerth [Wed, 28 Oct 2009 06:39:49 +0000 (06:39 +0000)]
Order targets properly.
git-svn-id: https://svn.dealii.org/trunk@20003
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bangerth [Wed, 28 Oct 2009 04:38:11 +0000 (04:38 +0000)]
Work around a problem with complex numbers.
git-svn-id: https://svn.dealii.org/trunk@19999
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bangerth [Wed, 28 Oct 2009 04:31:18 +0000 (04:31 +0000)]
Update vectors if *one* processor has changed, not if *every* processor has changed.
git-svn-id: https://svn.dealii.org/trunk@19998
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heltai [Mon, 26 Oct 2009 17:06:36 +0000 (17:06 +0000)]
Added gcc 4.5 as gfortran compiler in configure and aclocal.m4
git-svn-id: https://svn.dealii.org/trunk@19996
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bangerth [Sun, 25 Oct 2009 02:49:06 +0000 (02:49 +0000)]
Avoid confusing people with cell->vertex(vertex).
git-svn-id: https://svn.dealii.org/trunk@19995
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bangerth [Sun, 25 Oct 2009 02:47:44 +0000 (02:47 +0000)]
Avoid confusing people with cell->vertex(vertex).
git-svn-id: https://svn.dealii.org/trunk@19994
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bangerth [Thu, 22 Oct 2009 20:26:31 +0000 (20:26 +0000)]
Fix a bug: for a boost::scoped_ptr, the test
&*ptr != 0
fails if ptr==0 because boost trips on an assertion if we call
operator* on a pointer that's zero.
git-svn-id: https://svn.dealii.org/trunk@19988
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bangerth [Thu, 22 Oct 2009 13:43:11 +0000 (13:43 +0000)]
Set properties.
git-svn-id: https://svn.dealii.org/trunk@19986
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bangerth [Thu, 22 Oct 2009 13:35:12 +0000 (13:35 +0000)]
Add more links to the graph.
git-svn-id: https://svn.dealii.org/trunk@19985
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bangerth [Thu, 22 Oct 2009 13:18:01 +0000 (13:18 +0000)]
Fix name of equations.
git-svn-id: https://svn.dealii.org/trunk@19984
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kanschat [Wed, 21 Oct 2009 17:45:18 +0000 (17:45 +0000)]
Start dependence graph of example steps
git-svn-id: https://svn.dealii.org/trunk@19982
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bangerth [Tue, 20 Oct 2009 16:30:55 +0000 (16:30 +0000)]
The test is invalid if the DoFTools::dof_indices_with_subdomain_association function is implemented as on the distributed meshes branch.
git-svn-id: https://svn.dealii.org/trunk@19962
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leicht [Tue, 20 Oct 2009 06:03:02 +0000 (06:03 +0000)]
Simplify updates of neighbor pointers which got terribly complicated with the
anisotropic refinement capabilities. This also ensures valid neighbor
information on inactive cells.
git-svn-id: https://svn.dealii.org/trunk@19956
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bangerth [Fri, 16 Oct 2009 18:33:14 +0000 (18:33 +0000)]
Remove whitespace at the end of lines.
git-svn-id: https://svn.dealii.org/trunk@19918
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bangerth [Fri, 16 Oct 2009 18:32:25 +0000 (18:32 +0000)]
Avoid a thinko where we assumed a scratch array always held the same
content, though that isn't the case in non-MT mode.
git-svn-id: https://svn.dealii.org/trunk@19917
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bangerth [Fri, 16 Oct 2009 18:26:32 +0000 (18:26 +0000)]
Remove whitespace at the end of lines.
git-svn-id: https://svn.dealii.org/trunk@19916
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bangerth [Fri, 16 Oct 2009 16:16:37 +0000 (16:16 +0000)]
Explicitely initialize base class.
git-svn-id: https://svn.dealii.org/trunk@19911
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kronbichler [Fri, 16 Oct 2009 08:31:36 +0000 (08:31 +0000)]
Let PETSc::VectorBase inherit from Subscriptor to fix a compile problem in mesh_worker_vector_selector.
git-svn-id: https://svn.dealii.org/trunk@19910
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bangerth [Fri, 16 Oct 2009 00:21:45 +0000 (00:21 +0000)]
Remove unused variable.
git-svn-id: https://svn.dealii.org/trunk@19908
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bangerth [Thu, 15 Oct 2009 23:51:55 +0000 (23:51 +0000)]
Fix typo.
git-svn-id: https://svn.dealii.org/trunk@19905
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bangerth [Thu, 15 Oct 2009 22:57:57 +0000 (22:57 +0000)]
Implement indexing also for non-contiguous ranges.
git-svn-id: https://svn.dealii.org/trunk@19898
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