https://gitweb.dealii.org/ - dealii-svn.git/log

heister [Mon, 3 Dec 2012 19:24:54 +0000 (19:24 +0000)]

merge from mainline

git-svn-id: https://svn.dealii.org/branches/branch_merge_mg_into_dof_handler@27734 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Mon, 3 Dec 2012 14:21:08 +0000 (14:21 +0000)]

reformat documentation and add memory consumption

git-svn-id: https://svn.dealii.org/trunk@27728 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 3 Dec 2012 08:16:25 +0000 (08:16 +0000)]

Avoid a couple of (stupid) warnings.

git-svn-id: https://svn.dealii.org/trunk@27727 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 3 Dec 2012 07:18:50 +0000 (07:18 +0000)]

Reformat one statement.

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maier [Sat, 1 Dec 2012 21:25:44 +0000 (21:25 +0000)]

Reintroduce the old make_periodicity_constraints interface as well (because this one is _very_ convenient)

git-svn-id: https://svn.dealii.org/trunk@27722 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 1 Dec 2012 21:25:14 +0000 (21:25 +0000)]

Add some Assertions, reindent

git-svn-id: https://svn.dealii.org/trunk@27721 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 1 Dec 2012 17:18:05 +0000 (17:18 +0000)]

update changes.h

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maier [Sat, 1 Dec 2012 17:17:49 +0000 (17:17 +0000)]

A new test for make_periodicity_constraints

git-svn-id: https://svn.dealii.org/trunk@27718 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 1 Dec 2012 17:17:25 +0000 (17:17 +0000)]

Bugfix: Make DoFTools::make_periodicity_constraints orientation aware

With this it is now possible to prescribe an orientation for the low level
interface, the high level interface will detect the necessary orientation
automatically, *yay*.

git-svn-id: https://svn.dealii.org/trunk@27717 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 1 Dec 2012 17:17:02 +0000 (17:17 +0000)]

A new test for GridTools::collect_periodic_face_pairs

git-svn-id: https://svn.dealii.org/trunk@27716 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 1 Dec 2012 17:16:43 +0000 (17:16 +0000)]

Bugfixes:

- Refactor GridTools::collect_periodic_cell_pairs to GridTools::collect_periodic_face_pairs

- Make GridTools::collect_periodix_face_pairs orientation (orientation, flip, rotation) aware

git-svn-id: https://svn.dealii.org/trunk@27715 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 1 Dec 2012 17:16:18 +0000 (17:16 +0000)]

Bugfix: Fix GeometryInfo<2>::child_cell_on_face to respect face_flip

This change does not trigger any regression in the test suite

git-svn-id: https://svn.dealii.org/trunk@27714 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 1 Dec 2012 12:37:39 +0000 (12:37 +0000)]

Comment out unused function arguments.

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bangerth [Fri, 30 Nov 2012 14:00:28 +0000 (14:00 +0000)]

Merge from mainline.

git-svn-id: https://svn.dealii.org/branches/branch_merge_mg_into_dof_handler@27711 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Nov 2012 23:42:30 +0000 (23:42 +0000)]

Remove now outdated files.

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bangerth [Thu, 29 Nov 2012 16:18:56 +0000 (16:18 +0000)]

Update results for PETSc 3.3.

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bangerth [Thu, 29 Nov 2012 16:16:47 +0000 (16:16 +0000)]

Remove a test that checks PETSc's Richardson solver but that has never worked and that with PETSc 3.3 now actually aborts.

git-svn-id: https://svn.dealii.org/trunk@27704 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Thu, 29 Nov 2012 16:05:54 +0000 (16:05 +0000)]

Allow ConstraintMatrix::distribute_local_to_global with ChunkSparseMatrix.

git-svn-id: https://svn.dealii.org/trunk@27703 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Nov 2012 15:07:56 +0000 (15:07 +0000)]

Reindent a couple comments. Primarily do so to trigger an automated run of the
testsuite to see if the new setup works.

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bangerth [Thu, 29 Nov 2012 14:15:46 +0000 (14:15 +0000)]

Minor indentation changes.

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bangerth [Tue, 27 Nov 2012 14:10:29 +0000 (14:10 +0000)]

Minor markup fixes.

git-svn-id: https://svn.dealii.org/trunk@27696 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 27 Nov 2012 14:09:14 +0000 (14:09 +0000)]

Markup fix.

git-svn-id: https://svn.dealii.org/trunk@27695 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 27 Nov 2012 03:54:03 +0000 (03:54 +0000)]

Fix grammar.

git-svn-id: https://svn.dealii.org/trunk@27694 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Nov 2012 20:02:27 +0000 (20:02 +0000)]

Update an output file that produces different (now correct) results after r27655.

git-svn-id: https://svn.dealii.org/trunk@27691 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 26 Nov 2012 16:39:45 +0000 (16:39 +0000)]

fix comment

git-svn-id: https://svn.dealii.org/trunk@27690 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 26 Nov 2012 14:48:34 +0000 (14:48 +0000)]

Reindent the comments in fe_update_flags.h

git-svn-id: https://svn.dealii.org/trunk@27688 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 26 Nov 2012 14:37:31 +0000 (14:37 +0000)]

Adjust problem size to what is shown in results.

git-svn-id: https://svn.dealii.org/trunk@27687 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 26 Nov 2012 13:08:18 +0000 (13:08 +0000)]

FE_FaceQ should have unit face support points just like FE_DGQ has unit cell support points.

git-svn-id: https://svn.dealii.org/trunk@27684 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Nov 2012 04:57:29 +0000 (04:57 +0000)]

Add a version of DoFTools::make_zero_boundary_constraints that works on only part of the boundary.

git-svn-id: https://svn.dealii.org/trunk@27683 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Nov 2012 04:04:13 +0000 (04:04 +0000)]

Introduce numbers::invalid_boundary_id. Fix up documentation in a couple of other places.

git-svn-id: https://svn.dealii.org/trunk@27682 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sat, 24 Nov 2012 14:58:27 +0000 (14:58 +0000)]

Simplify fixed_power.

git-svn-id: https://svn.dealii.org/trunk@27678 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 23 Nov 2012 15:41:25 +0000 (15:41 +0000)]

Prettify comments and indent in exceptions.h

git-svn-id: https://svn.dealii.org/trunk@27675 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 23 Nov 2012 10:11:05 +0000 (10:11 +0000)]

Fix error message when deal.II uses static libraries and Trilinos shared ones.

git-svn-id: https://svn.dealii.org/trunk@27673 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 23 Nov 2012 10:04:01 +0000 (10:04 +0000)]

VectorTools::interpolate should not call compress on parallel::distributed::Vector as this zeros out those entries that are not locally active but included via constraints. Test step-48 and step-37.

git-svn-id: https://svn.dealii.org/trunk@27672 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Thu, 22 Nov 2012 13:32:48 +0000 (13:32 +0000)]

Avoid segmentation fault when calling DoFHandler::distribute_dofs on empty triangulation.

git-svn-id: https://svn.dealii.org/trunk@27671 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 23:50:16 +0000 (23:50 +0000)]

Avoid debug output to the console.

git-svn-id: https://svn.dealii.org/trunk@27668 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 23:49:38 +0000 (23:49 +0000)]

Introduce a version of step-40 that uses a direct solver.

git-svn-id: https://svn.dealii.org/trunk@27667 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 22:05:49 +0000 (22:05 +0000)]

Fix typo.

git-svn-id: https://svn.dealii.org/trunk@27666 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 21:59:45 +0000 (21:59 +0000)]

Remove a TODO that no longer applies. Minor indentation changes.

git-svn-id: https://svn.dealii.org/trunk@27665 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 20:04:42 +0000 (20:04 +0000)]

We can't use PETSc with threads, so can't use the Kelly error estimator here. Use globally refined meshes instead.

git-svn-id: https://svn.dealii.org/trunk@27664 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 21 Nov 2012 17:04:17 +0000 (17:04 +0000)]

Removed one obsolete comment.

git-svn-id: https://svn.dealii.org/trunk@27663 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 21 Nov 2012 16:36:27 +0000 (16:36 +0000)]

Update outdated function/class names in comments.

git-svn-id: https://svn.dealii.org/trunk@27662 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 14:38:52 +0000 (14:38 +0000)]

Doxygen markup fixes.

git-svn-id: https://svn.dealii.org/trunk@27661 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 14:35:43 +0000 (14:35 +0000)]

Allow compilation with this file again.

git-svn-id: https://svn.dealii.org/trunk@27660 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 13:23:39 +0000 (13:23 +0000)]

Avoid a multiline comment.

git-svn-id: https://svn.dealii.org/trunk@27659 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 13:22:11 +0000 (13:22 +0000)]

Avoid a multiline comment.

git-svn-id: https://svn.dealii.org/trunk@27658 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 13:19:08 +0000 (13:19 +0000)]

Use ranges for copyright years.

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bangerth [Wed, 21 Nov 2012 13:12:20 +0000 (13:12 +0000)]

Reformat all tutorial programs using the not-so-far indented comment style.

git-svn-id: https://svn.dealii.org/trunk@27656 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 03:28:44 +0000 (03:28 +0000)]

Fix a bug in DoFTools::make_flux_sparsity_pattern originally reported by Baerbel.

git-svn-id: https://svn.dealii.org/trunk@27655 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 23:59:09 +0000 (23:59 +0000)]

merge from mainline

git-svn-id: https://svn.dealii.org/branches/branch_merge_mg_into_dof_handler@27648 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 23:57:21 +0000 (23:57 +0000)]

better way to fix indentation problem

git-svn-id: https://svn.dealii.org/trunk@27646 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 23:39:07 +0000 (23:39 +0000)]

fix compiler error created by astyle

git-svn-id: https://svn.dealii.org/trunk@27645 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 23:26:46 +0000 (23:26 +0000)]

merge from mainline

git-svn-id: https://svn.dealii.org/branches/branch_merge_mg_into_dof_handler@27635 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 23:20:45 +0000 (23:20 +0000)]

merge indentation manually

git-svn-id: https://svn.dealii.org/branches/branch_merge_mg_into_dof_handler@27632 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 20 Nov 2012 23:00:01 +0000 (23:00 +0000)]

Update.

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heister [Tue, 20 Nov 2012 22:49:26 +0000 (22:49 +0000)]

indent the whole source code with astyle

git-svn-id: https://svn.dealii.org/trunk@27628 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 22:34:42 +0000 (22:34 +0000)]

merge from mainline

git-svn-id: https://svn.dealii.org/branches/branch_merge_mg_into_dof_handler@27623 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 22:27:33 +0000 (22:27 +0000)]

fix comment

git-svn-id: https://svn.dealii.org/trunk@27619 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 22:23:12 +0000 (22:23 +0000)]

update style files again

git-svn-id: https://svn.dealii.org/trunk@27618 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 22:03:55 +0000 (22:03 +0000)]

update astyle file after discussion on mailing list

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kanschat [Tue, 20 Nov 2012 20:13:28 +0000 (20:13 +0000)]

reinsert reference

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kanschat [Tue, 20 Nov 2012 19:08:39 +0000 (19:08 +0000)]

I guess endings are rather .cc and .h, not just cc and h

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kanschat [Tue, 20 Nov 2012 19:07:32 +0000 (19:07 +0000)]

Change alignment of pointers and remove offending option

git-svn-id: https://svn.dealii.org/trunk@27612 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 20 Nov 2012 17:57:53 +0000 (17:57 +0000)]

Remove accidentally added directory.

git-svn-id: https://svn.dealii.org/trunk@27609 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 20 Nov 2012 17:55:04 +0000 (17:55 +0000)]

New test. It turns out that there was no test previously that actually ran a solver. This is one.

git-svn-id: https://svn.dealii.org/trunk@27608 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 20 Nov 2012 17:48:16 +0000 (17:48 +0000)]

Fix a wrongly named function in a comment.

git-svn-id: https://svn.dealii.org/trunk@27607 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 17:22:59 +0000 (17:22 +0000)]

merge from mainline

git-svn-id: https://svn.dealii.org/branches/branch_merge_mg_into_dof_handler@27601 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 17:16:56 +0000 (17:16 +0000)]

update astyle file

git-svn-id: https://svn.dealii.org/trunk@27600 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 20 Nov 2012 16:37:36 +0000 (16:37 +0000)]

Prettify indentation.

git-svn-id: https://svn.dealii.org/trunk@27597 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 20 Nov 2012 15:53:53 +0000 (15:53 +0000)]

Fix some more comment.

git-svn-id: https://svn.dealii.org/trunk@27596 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 20 Nov 2012 15:47:05 +0000 (15:47 +0000)]

Fix typos in comments.

git-svn-id: https://svn.dealii.org/trunk@27595 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 20 Nov 2012 15:39:35 +0000 (15:39 +0000)]

Eliminate three more warnings.

git-svn-id: https://svn.dealii.org/trunk@27594 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 20 Nov 2012 15:31:31 +0000 (15:31 +0000)]

Test the PETScWrappers::SparseDirectMumps interface.

git-svn-id: https://svn.dealii.org/trunk@27593 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 20 Nov 2012 15:03:39 +0000 (15:03 +0000)]

Fix warning with clang.

git-svn-id: https://svn.dealii.org/trunk@27592 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 20 Nov 2012 04:33:40 +0000 (04:33 +0000)]

One more test.

git-svn-id: https://svn.dealii.org/trunk@27583 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 20 Nov 2012 04:18:55 +0000 (04:18 +0000)]

Ignore unused parameter.

git-svn-id: https://svn.dealii.org/trunk@27582 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 20 Nov 2012 04:18:36 +0000 (04:18 +0000)]

Ignore unused parameter.

git-svn-id: https://svn.dealii.org/trunk@27581 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 20 Nov 2012 03:03:55 +0000 (03:03 +0000)]

More tests.

git-svn-id: https://svn.dealii.org/trunk@27580 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 20 Nov 2012 02:47:04 +0000 (02:47 +0000)]

Add another test.

git-svn-id: https://svn.dealii.org/trunk@27579 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Mon, 19 Nov 2012 12:15:16 +0000 (12:15 +0000)]

More comments

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frohne [Mon, 19 Nov 2012 11:59:43 +0000 (11:59 +0000)]

clean up and comment the solve-function

git-svn-id: https://svn.dealii.org/trunk@27576 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Mon, 19 Nov 2012 09:43:45 +0000 (09:43 +0000)]

Keeping the contact constraints, set_zero for system_rhs_newton in hanging nodes

git-svn-id: https://svn.dealii.org/trunk@27575 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 19 Nov 2012 09:32:39 +0000 (09:32 +0000)]

Fix some issues with undefined references

git-svn-id: https://svn.dealii.org/trunk@27571 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sun, 18 Nov 2012 15:09:35 +0000 (15:09 +0000)]

One more roundoff change.

git-svn-id: https://svn.dealii.org/trunk@27567 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sun, 18 Nov 2012 14:03:05 +0000 (14:03 +0000)]

Fix test output on the order of roundoff because of slightly different accumulation of roundoff error with the change in the vector implementation.

git-svn-id: https://svn.dealii.org/trunk@27566 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sun, 18 Nov 2012 08:36:09 +0000 (08:36 +0000)]

Parallelize inner products, norms, etc in dealii::Vector with TBB. Tests for accumulation. Slight cleanup of parallel operations in Vector.

git-svn-id: https://svn.dealii.org/trunk@27561 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sat, 17 Nov 2012 21:08:39 +0000 (21:08 +0000)]

Test compression of mapping indices and constraint weights.

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kronbichler [Sat, 17 Nov 2012 21:07:10 +0000 (21:07 +0000)]

Run autoheader.

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kronbichler [Sat, 17 Nov 2012 21:04:26 +0000 (21:04 +0000)]

Use fixed_int_power instead of re-implementing it.

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kronbichler [Sat, 17 Nov 2012 21:03:29 +0000 (21:03 +0000)]

Skip hashes for comparing constraints in favor of a std::map with user-defined comparator. This makes code cleaner and runs faster since boost's hash value is slow.

Fix error in dof_info.templates.h when hp elements are used but only one element is present.

Fix error in AVX detection.

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kanschat [Fri, 16 Nov 2012 14:37:57 +0000 (14:37 +0000)]

update namespace and documentation

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bangerth [Wed, 14 Nov 2012 14:05:09 +0000 (14:05 +0000)]

Avoid warning about unused argument.

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bangerth [Wed, 14 Nov 2012 14:00:00 +0000 (14:00 +0000)]

Avoid warning about unused argument.

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bangerth [Wed, 14 Nov 2012 03:28:42 +0000 (03:28 +0000)]

Move closer to usual style.

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bangerth [Wed, 14 Nov 2012 03:25:14 +0000 (03:25 +0000)]

Leave two urgent TODOs for this class.

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bangerth [Wed, 14 Nov 2012 03:18:19 +0000 (03:18 +0000)]

Fix typo.

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bangerth [Wed, 14 Nov 2012 03:14:18 +0000 (03:14 +0000)]

Mark a few local variables as const.

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bangerth [Wed, 14 Nov 2012 03:12:26 +0000 (03:12 +0000)]

Mark input arguments as const.

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heister [Mon, 12 Nov 2012 20:16:34 +0000 (20:16 +0000)]

merge from mainline

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heister [Mon, 12 Nov 2012 16:49:14 +0000 (16:49 +0000)]

revert r27525

git-svn-id: https://svn.dealii.org/trunk@27526 0785d39b-7218-0410-832d-ea1e28bc413d

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