https://gitweb.dealii.org/

Scott Miller [Mon, 30 Sep 2013 00:13:51 +0000 (00:13 +0000)]

Fix typo in documentation.

git-svn-id: https://svn.dealii.org/trunk@31021 0785d39b-7218-0410-832d-ea1e28bc413d

Wolfgang Bangerth [Sun, 29 Sep 2013 23:19:32 +0000 (23:19 +0000)]

Try to align instantiations to declarations, in hopes of fixing bug #122.

git-svn-id: https://svn.dealii.org/trunk@31020 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 29 Sep 2013 23:18:26 +0000 (23:18 +0000)]

Provide copy constructors for iterators.

git-svn-id: https://svn.dealii.org/trunk@31019 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 29 Sep 2013 22:55:32 +0000 (22:55 +0000)]

More small mods.

git-svn-id: https://svn.dealii.org/trunk@31018 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 29 Sep 2013 22:44:59 +0000 (22:44 +0000)]

Further cleanups.

git-svn-id: https://svn.dealii.org/trunk@31017 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 29 Sep 2013 18:48:12 +0000 (18:48 +0000)]

Clean up member variable list somewhat. As far as possible, initialize member variables in the initializer list and then mark them as const.

git-svn-id: https://svn.dealii.org/trunk@31013 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 29 Sep 2013 14:58:31 +0000 (14:58 +0000)]

Add a few comments. Fix a couple of oversights where the same function is used for both cell integrals and boundary integrals (though the evaluated function values are, in fact, only used for the boundary integrals).

git-svn-id: https://svn.dealii.org/trunk@31011 0785d39b-7218-0410-832d-ea1e28bc413d

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Joerg Frohne [Sat, 28 Sep 2013 23:20:10 +0000 (23:20 +0000)]

fix sphere obstacle function

git-svn-id: https://svn.dealii.org/trunk@31009 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 28 Sep 2013 21:55:29 +0000 (21:55 +0000)]

Add a newline to the end of the file, as mandated by the C++ standard.

git-svn-id: https://svn.dealii.org/trunk@31006 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 28 Sep 2013 21:55:12 +0000 (21:55 +0000)]

Add a newline to the end of the file, as mandated by the C++ standard.

git-svn-id: https://svn.dealii.org/trunk@31005 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 28 Sep 2013 21:42:33 +0000 (21:42 +0000)]

Make compile with 64-bit.

git-svn-id: https://svn.dealii.org/trunk@31003 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 28 Sep 2013 11:59:19 +0000 (11:59 +0000)]

More minor changes.

git-svn-id: https://svn.dealii.org/trunk@30999 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 28 Sep 2013 11:40:39 +0000 (11:40 +0000)]

Slightly more cleanup.

git-svn-id: https://svn.dealii.org/trunk@30998 0785d39b-7218-0410-832d-ea1e28bc413d

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Eric Heien [Fri, 27 Sep 2013 23:48:07 +0000 (23:48 +0000)]

Added DataOutFilter class to remove duplicate vertices/values and serialization for XDMFEntry class

git-svn-id: https://svn.dealii.org/trunk@30991 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 20:57:56 +0000 (20:57 +0000)]

Reindent.

git-svn-id: https://svn.dealii.org/trunk@30990 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 20:56:43 +0000 (20:56 +0000)]

Rename a couple of things.

git-svn-id: https://svn.dealii.org/trunk@30989 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 20:54:58 +0000 (20:54 +0000)]

Update.

git-svn-id: https://svn.dealii.org/trunk@30988 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 20:49:39 +0000 (20:49 +0000)]

Move around a bit of stuff. More documentation.

git-svn-id: https://svn.dealii.org/trunk@30987 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 13:10:22 +0000 (13:10 +0000)]

Move initialization of obstacle into constructor of main class.

git-svn-id: https://svn.dealii.org/trunk@30984 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 13:04:43 +0000 (13:04 +0000)]

Let the main class only store a pointer to the obstacle, not the object that reads in the file.

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Wolfgang Bangerth [Fri, 27 Sep 2013 13:02:54 +0000 (13:02 +0000)]

add

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Matthias Maier [Fri, 27 Sep 2013 12:49:42 +0000 (12:49 +0000)]

CMake: Bugfix - nice try...

git-svn-id: https://svn.dealii.org/trunk@30978 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 27 Sep 2013 12:48:12 +0000 (12:48 +0000)]

fix crash in ConstraintMatrix constructor taking IndexSet (release mode only)

git-svn-id: https://svn.dealii.org/trunk@30977 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Fri, 27 Sep 2013 12:43:26 +0000 (12:43 +0000)]

CMake: Bugfix: Also include 3rd party include directories in FindPETSC.conf

It is really necessary to use all exported include directories from a PETSc
installation.

git-svn-id: https://svn.dealii.org/trunk@30975 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 12:34:23 +0000 (12:34 +0000)]

Avoid infinite loop.

git-svn-id: https://svn.dealii.org/trunk@30973 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 12:21:55 +0000 (12:21 +0000)]

Make compile again.

git-svn-id: https://svn.dealii.org/trunk@30972 0785d39b-7218-0410-832d-ea1e28bc413d

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Joerg Frohne [Thu, 26 Sep 2013 21:39:35 +0000 (21:39 +0000)]

small change in update_solution_and_constraints

git-svn-id: https://svn.dealii.org/trunk@30971 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Thu, 26 Sep 2013 20:37:50 +0000 (20:37 +0000)]

Use std_cxx1x::function for graph_coloring.

git-svn-id: https://svn.dealii.org/trunk@30970 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 26 Sep 2013 18:42:50 +0000 (18:42 +0000)]

fix elasticity test

git-svn-id: https://svn.dealii.org/trunk@30964 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 26 Sep 2013 18:42:28 +0000 (18:42 +0000)]

new residual Divergence::u_times_n\
fixed elasticity residuals

git-svn-id: https://svn.dealii.org/trunk@30963 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 26 Sep 2013 15:49:18 +0000 (15:49 +0000)]

fix typo

git-svn-id: https://svn.dealii.org/trunk@30961 0785d39b-7218-0410-832d-ea1e28bc413d

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Joerg Frohne [Thu, 26 Sep 2013 15:26:10 +0000 (15:26 +0000)]

splitting obstacle class into two classes

git-svn-id: https://svn.dealii.org/trunk@30959 0785d39b-7218-0410-832d-ea1e28bc413d

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Felix Gruber [Thu, 26 Sep 2013 12:24:50 +0000 (12:24 +0000)]

doc/users: fix some broken links

git-svn-id: https://svn.dealii.org/trunk@30950 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Thu, 26 Sep 2013 09:28:52 +0000 (09:28 +0000)]

Fix a lot of links

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Matthias Maier [Thu, 26 Sep 2013 09:18:00 +0000 (09:18 +0000)]

Add a second link for the reports

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Matthias Maier [Thu, 26 Sep 2013 09:15:15 +0000 (09:15 +0000)]

Fix typos

git-svn-id: https://svn.dealii.org/trunk@30943 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 26 Sep 2013 08:58:02 +0000 (08:58 +0000)]

advection residuals fixed

git-svn-id: https://svn.dealii.org/trunk@30942 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 26 Sep 2013 08:19:33 +0000 (08:19 +0000)]

weak residuals

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Wolfgang Bangerth [Thu, 26 Sep 2013 01:22:38 +0000 (01:22 +0000)]

Fix name of type...

git-svn-id: https://svn.dealii.org/trunk@30939 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 25 Sep 2013 22:49:59 +0000 (22:49 +0000)]

Use types::global_dof_indices.

git-svn-id: https://svn.dealii.org/trunk@30931 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 25 Sep 2013 22:48:53 +0000 (22:48 +0000)]

Use types::global_dof_indices.

git-svn-id: https://svn.dealii.org/trunk@30930 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Wed, 25 Sep 2013 22:33:26 +0000 (22:33 +0000)]

The big documentation overhaul

git-svn-id: https://svn.dealii.org/trunk@30929 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Wed, 25 Sep 2013 20:30:34 +0000 (20:30 +0000)]

Finish documentation

git-svn-id: https://svn.dealii.org/trunk@30925 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Wed, 25 Sep 2013 17:28:47 +0000 (17:28 +0000)]

Fix a bug in work_stream when using graph_coloring.

git-svn-id: https://svn.dealii.org/trunk@30922 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Wed, 25 Sep 2013 16:12:27 +0000 (16:12 +0000)]

Use graph coloring whith work_stream.

git-svn-id: https://svn.dealii.org/trunk@30921 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 25 Sep 2013 14:57:51 +0000 (14:57 +0000)]

Add note about yesterday's change to PETSc wrappers.

git-svn-id: https://svn.dealii.org/trunk@30920 0785d39b-7218-0410-832d-ea1e28bc413d

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Scott Miller [Wed, 25 Sep 2013 12:44:32 +0000 (12:44 +0000)]

Fix typo in documentation.

git-svn-id: https://svn.dealii.org/trunk@30919 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 24 Sep 2013 18:25:07 +0000 (18:25 +0000)]

Avoid outputting 'number-number' since ./normalize might turn that into numbernumber if the second number just so happens to be zero -- and then consequently completely confuse numdiff.

git-svn-id: https://svn.dealii.org/trunk@30917 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 24 Sep 2013 18:12:47 +0000 (18:12 +0000)]

Work around a change in PETSc 3.4.

git-svn-id: https://svn.dealii.org/trunk@30916 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Tue, 24 Sep 2013 16:12:47 +0000 (16:12 +0000)]

instantiate selectors for const vectors

git-svn-id: https://svn.dealii.org/trunk@30915 0785d39b-7218-0410-832d-ea1e28bc413d

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Daniel Arndt [Tue, 24 Sep 2013 14:37:29 +0000 (14:37 +0000)]

Fixed bug in add_periodicity. There were errors when the mesh is not immediately refined.

git-svn-id: https://svn.dealii.org/trunk@30914 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Tue, 24 Sep 2013 09:04:36 +0000 (09:04 +0000)]

add homogeneous boundary operator

git-svn-id: https://svn.dealii.org/trunk@30907 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 24 Sep 2013 00:35:14 +0000 (00:35 +0000)]

More work.

git-svn-id: https://svn.dealii.org/trunk@30903 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 23 Sep 2013 23:56:21 +0000 (23:56 +0000)]

Some more work.

git-svn-id: https://svn.dealii.org/trunk@30902 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 23 Sep 2013 21:15:23 +0000 (21:15 +0000)]

More small rewrites.

git-svn-id: https://svn.dealii.org/trunk@30901 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 23 Sep 2013 16:11:26 +0000 (16:11 +0000)]

Resize picture.

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Wolfgang Bangerth [Mon, 23 Sep 2013 15:58:51 +0000 (15:58 +0000)]

Use pictures from the central repository.

git-svn-id: https://svn.dealii.org/trunk@30898 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 23 Sep 2013 15:58:27 +0000 (15:58 +0000)]

More editing. Return some values rather than having functions have several output arguments.

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Wolfgang Bangerth [Mon, 23 Sep 2013 15:48:30 +0000 (15:48 +0000)]

Remove the original tex version of the introduction.

git-svn-id: https://svn.dealii.org/trunk@30896 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Mon, 23 Sep 2013 15:23:24 +0000 (15:23 +0000)]

Remove the out-of-source check from DEAL_II_INVOKE_AUTOPILOT

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Scott Miller [Mon, 23 Sep 2013 14:02:09 +0000 (14:02 +0000)]

Fix typos and set diffusion in step-51.

git-svn-id: https://svn.dealii.org/trunk@30894 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 23 Sep 2013 13:41:10 +0000 (13:41 +0000)]

Use standard indentation scheme.

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Wolfgang Bangerth [Mon, 23 Sep 2013 13:39:34 +0000 (13:39 +0000)]

Minor edits.

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Wolfgang Bangerth [Mon, 23 Sep 2013 13:39:18 +0000 (13:39 +0000)]

Rename images to standard naming scheme. Add the image that describes the obstacle.

git-svn-id: https://svn.dealii.org/trunk@30891 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 23 Sep 2013 03:18:31 +0000 (03:18 +0000)]

Work on the introduction.

git-svn-id: https://svn.dealii.org/trunk@30890 0785d39b-7218-0410-832d-ea1e28bc413d

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Fahad Alrashed [Sat, 21 Sep 2013 16:23:32 +0000 (16:23 +0000)]

modified dealii/data_out.cc to test both write_visit_record functions

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Fahad Alrashed [Sat, 21 Sep 2013 16:05:02 +0000 (16:05 +0000)]

forgot to add a new entry in changes.h

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Fahad Alrashed [Sat, 21 Sep 2013 15:52:05 +0000 (15:52 +0000)]

added write_visit_record that allows for multiple blocks and more than one time step

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Wolfgang Bangerth [Sat, 21 Sep 2013 12:29:40 +0000 (12:29 +0000)]

Fix grammar of message.

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Wolfgang Bangerth [Sat, 21 Sep 2013 12:03:54 +0000 (12:03 +0000)]

Minor markup improvements.

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Wolfgang Bangerth [Sat, 21 Sep 2013 12:03:40 +0000 (12:03 +0000)]

Fix leftover note.

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Wolfgang Bangerth [Fri, 20 Sep 2013 23:12:29 +0000 (23:12 +0000)]

Fix two tests.

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Wolfgang Bangerth [Fri, 20 Sep 2013 23:00:53 +0000 (23:00 +0000)]

Add an instantiation that was previous missing in optimized mode.

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Wolfgang Bangerth [Fri, 20 Sep 2013 22:21:54 +0000 (22:21 +0000)]

Fix typo.

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Wolfgang Bangerth [Fri, 20 Sep 2013 13:06:08 +0000 (13:06 +0000)]

Add two.

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Bruno Turcksin [Thu, 19 Sep 2013 20:39:37 +0000 (20:39 +0000)]

Change graph_coloring to accept an user-defined function to get the conflict_indices.

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Timo Heister [Thu, 19 Sep 2013 18:30:26 +0000 (18:30 +0000)]

fix test

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Daniel Arndt [Thu, 19 Sep 2013 16:45:08 +0000 (16:45 +0000)]

Added new tests for collect_periodic_face_pairs

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Daniel Arndt [Thu, 19 Sep 2013 16:33:50 +0000 (16:33 +0000)]

Added tests for collect_periodic_face_pairs and unified code in make_periodicity_constraints

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Timo Heister [Thu, 19 Sep 2013 14:58:19 +0000 (14:58 +0000)]

add hdf5 test

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Timo Heister [Thu, 19 Sep 2013 14:54:21 +0000 (14:54 +0000)]

tests: move cat_file to other header

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Wolfgang Bangerth [Thu, 19 Sep 2013 14:32:13 +0000 (14:32 +0000)]

Document the exception that is being thrown.

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Scott Miller [Thu, 19 Sep 2013 02:00:54 +0000 (02:00 +0000)]

Step-51 documentation fixes.

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Eric Heien [Wed, 18 Sep 2013 21:31:52 +0000 (21:31 +0000)]

Fixed HDF5 multiprocessor bug

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Bruno Turcksin [Wed, 18 Sep 2013 21:09:09 +0000 (21:09 +0000)]

Add test for graph_coloring.

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Timo Heister [Wed, 18 Sep 2013 16:36:56 +0000 (16:36 +0000)]

add test

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Timo Heister [Wed, 18 Sep 2013 16:36:32 +0000 (16:36 +0000)]

find_active_cell_around_point now throws the exception ExcPointNotFound

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Timo Heister [Wed, 18 Sep 2013 15:39:17 +0000 (15:39 +0000)]

disable checking MPI_init_thread return value because some implementations always return _SINGLE.

git-svn-id: https://svn.dealii.org/trunk@30799 0785d39b-7218-0410-832d-ea1e28bc413d

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Daniel Arndt [Wed, 18 Sep 2013 15:24:34 +0000 (15:24 +0000)]

Fixed add_periodity

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Bruno Turcksin [Wed, 18 Sep 2013 15:22:33 +0000 (15:22 +0000)]

Add a test for graph_coloring.

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Martin Kronbichler [Wed, 18 Sep 2013 14:48:18 +0000 (14:48 +0000)]

Explain integrals

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Scott Miller [Wed, 18 Sep 2013 14:28:19 +0000 (14:28 +0000)]

Step-51 documentation updates.

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Timo Heister [Wed, 18 Sep 2013 14:00:08 +0000 (14:00 +0000)]

update ignores

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Timo Heister [Wed, 18 Sep 2013 13:31:23 +0000 (13:31 +0000)]

fix asserttion in test

git-svn-id: https://svn.dealii.org/trunk@30787 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 18 Sep 2013 13:16:32 +0000 (13:16 +0000)]

fix r30770

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Martin Kronbichler [Wed, 18 Sep 2013 12:10:58 +0000 (12:10 +0000)]

Went through the complete tutorial and made the presentation consistent.

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Martin Kronbichler [Wed, 18 Sep 2013 07:07:32 +0000 (07:07 +0000)]

Improve documentation of positive entries for constrained entries.

git-svn-id: https://svn.dealii.org/trunk@30784 0785d39b-7218-0410-832d-ea1e28bc413d

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Scott Miller [Wed, 18 Sep 2013 02:20:23 +0000 (02:20 +0000)]

Fix typos in documentation.

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Bruno Turcksin [Tue, 17 Sep 2013 23:23:55 +0000 (23:23 +0000)]

Start graph coloring abilities for work_stream.

git-svn-id: https://svn.dealii.org/trunk@30781 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Tue, 17 Sep 2013 19:55:00 +0000 (19:55 +0000)]

Write section on results with solution pictures and convergence graphs. Now we only need to upload the images

git-svn-id: https://svn.dealii.org/trunk@30779 0785d39b-7218-0410-832d-ea1e28bc413d

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