]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
5 years agoMerge pull request #8189 from adam4130/update-boost
Wolfgang Bangerth [Fri, 17 May 2019 08:30:58 +0000 (02:30 -0600)]
Merge pull request #8189 from adam4130/update-boost

Updated boost::unordered_map/set to std library

5 years agoMerge pull request #8212 from tjhei/doc_colon_eq
Martin Kronbichler [Fri, 17 May 2019 07:12:01 +0000 (09:12 +0200)]
Merge pull request #8212 from tjhei/doc_colon_eq

doxygen: use coloneq in tutorials

5 years agoMerge pull request #8191 from kronbichler/transfinite_manifold_robustness
Matthias Maier [Fri, 17 May 2019 01:04:07 +0000 (20:04 -0500)]
Merge pull request #8191 from kronbichler/transfinite_manifold_robustness

Make TransfiniteInterpolationManifold more robust

5 years agodoxygen: use coloneq in tutorials 8212/head
Timo Heister [Thu, 16 May 2019 20:23:46 +0000 (14:23 -0600)]
doxygen: use coloneq in tutorials

5 years agoMerge pull request #8209 from masterleinad/trilinos_12_14_vector_adaptor
Matthias Maier [Thu, 16 May 2019 20:12:16 +0000 (15:12 -0500)]
Merge pull request #8209 from masterleinad/trilinos_12_14_vector_adaptor

Add vector_adaptor_02 Trilinos-12.14.1 variant

5 years agoMerge pull request #8208 from tjhei/add_some_tutorial_keywords
Matthias Maier [Thu, 16 May 2019 20:11:50 +0000 (15:11 -0500)]
Merge pull request #8208 from tjhei/add_some_tutorial_keywords

step-63 typo and add some tutorial keywords

5 years agoMerge pull request #8207 from tjhei/step63changelog_into_release
Matthias Maier [Thu, 16 May 2019 20:11:22 +0000 (15:11 -0500)]
Merge pull request #8207 from tjhei/step63changelog_into_release

move changelog entry for step-63

5 years agoMerge pull request #8200 from tamiko/adolc_guard
Matthias Maier [Thu, 16 May 2019 20:10:19 +0000 (15:10 -0500)]
Merge pull request #8200 from tamiko/adolc_guard

CMake: Add a safeguard that disables ADOL-C in case SEACASChaco is enabled

5 years agoAdjust tolerance in push_forward 8191/head
Martin Kronbichler [Thu, 16 May 2019 19:56:20 +0000 (21:56 +0200)]
Adjust tolerance in push_forward

5 years agoAdd vector_adaptor_02 Trilinos-12.14.1 variant 8209/head
Daniel Arndt [Thu, 16 May 2019 19:48:14 +0000 (15:48 -0400)]
Add vector_adaptor_02 Trilinos-12.14.1 variant

5 years agoMerge pull request #8205 from jppelteret/sd-doc_03
Timo Heister [Thu, 16 May 2019 19:45:41 +0000 (13:45 -0600)]
Merge pull request #8205 from jppelteret/sd-doc_03

Remove doxygen format from a comment block

5 years agoAdd changelog
Martin Kronbichler [Thu, 16 May 2019 07:39:54 +0000 (09:39 +0200)]
Add changelog

5 years agoThree new test cases to verify the transfinite manifold
Martin Kronbichler [Thu, 16 May 2019 07:37:18 +0000 (09:37 +0200)]
Three new test cases to verify the transfinite manifold

5 years agostep-63 typo and add some tutorial keywords 8208/head
Timo Heister [Thu, 16 May 2019 19:15:12 +0000 (13:15 -0600)]
step-63 typo and add some tutorial keywords

5 years ago9.1: move changelog entry for step-63 8207/head
Timo Heister [Wed, 15 May 2019 16:08:48 +0000 (10:08 -0600)]
9.1: move changelog entry for step-63

5 years agoRemove doxygen format from a comment block 8205/head
Jean-Paul Pelteret [Thu, 16 May 2019 18:24:10 +0000 (20:24 +0200)]
Remove doxygen format from a comment block

5 years agoMerge pull request #8202 from tjhei/fix_at_name_tags
Jean-Paul Pelteret [Thu, 16 May 2019 17:55:08 +0000 (19:55 +0200)]
Merge pull request #8202 from tjhei/fix_at_name_tags

fix doxygen @name tags

5 years agofix name 8202/head
Timo Heister [Thu, 16 May 2019 17:46:53 +0000 (11:46 -0600)]
fix name

5 years agofix doxygen @name tags
Timo Heister [Thu, 16 May 2019 17:05:42 +0000 (11:05 -0600)]
fix doxygen @name tags

5 years agoMerge pull request #8201 from tjhei/doc_remove_at_name_hack
Jean-Paul Pelteret [Thu, 16 May 2019 17:05:46 +0000 (19:05 +0200)]
Merge pull request #8201 from tjhei/doc_remove_at_name_hack

clang-format: do not break @name lines

5 years agoclang-format: do not break @name lines 8201/head
Timo Heister [Thu, 16 May 2019 16:38:53 +0000 (10:38 -0600)]
clang-format: do not break @name lines

remove hack in scratch_data and add @name to the list of items not to
break automatically.

note: I hate having to fight clang-format.

5 years agoCMake: Add a safeguard that disables ADOL-C in case SEACASChaco is enabled 8200/head
Matthias Maier [Thu, 16 May 2019 15:33:57 +0000 (10:33 -0500)]
CMake: Add a safeguard that disables ADOL-C in case SEACASChaco is enabled

5 years agoMerge pull request #8195 from jppelteret/scratch_data-doc_01
Matthias Maier [Thu, 16 May 2019 15:09:02 +0000 (10:09 -0500)]
Merge pull request #8195 from jppelteret/scratch_data-doc_01

Fix documentation in ScratchData

5 years agoFixed indentation 8189/head
adam4130 [Thu, 16 May 2019 13:18:29 +0000 (07:18 -0600)]
Fixed indentation

5 years agoFix documentation in ScratchData 8195/head
Jean-Paul Pelteret [Thu, 16 May 2019 09:27:03 +0000 (11:27 +0200)]
Fix documentation in ScratchData

5 years agoMerge pull request #8193 from bangerth/typo
Jean-Paul Pelteret [Thu, 16 May 2019 08:56:10 +0000 (10:56 +0200)]
Merge pull request #8193 from bangerth/typo

Fix a typo.

5 years agoFix a typo. 8193/head
Wolfgang Bangerth [Thu, 16 May 2019 08:09:17 +0000 (02:09 -0600)]
Fix a typo.

5 years agoMake the transfinite manifold more robust
Martin Kronbichler [Thu, 16 May 2019 07:36:56 +0000 (09:36 +0200)]
Make the transfinite manifold more robust

5 years agoMerge pull request #8188 from tjhei/undeprecate_get_mg_dofs
Matthias Maier [Thu, 16 May 2019 04:31:49 +0000 (23:31 -0500)]
Merge pull request #8188 from tjhei/undeprecate_get_mg_dofs

undeprecate get_mg_dof_indices

5 years agoUpdated boost::unordered_map/set to std library
adam4130 [Thu, 16 May 2019 02:49:29 +0000 (20:49 -0600)]
Updated boost::unordered_map/set to std library

5 years agoundeprecate get_mg_dof_indices 8188/head
Timo Heister [Wed, 15 May 2019 20:00:20 +0000 (14:00 -0600)]
undeprecate get_mg_dof_indices

fixes #7887
While the general function makes sense in assembly, this function is
useful in other situations and makes code more expressive.

5 years agoMerge pull request #8178 from tjhei/step63-fix
Wolfgang Bangerth [Wed, 15 May 2019 19:22:28 +0000 (13:22 -0600)]
Merge pull request #8178 from tjhei/step63-fix

followup small step-63 edits

5 years agoMerge pull request #8186 from tjhei/doxygen_fixes6
Wolfgang Bangerth [Wed, 15 May 2019 19:20:04 +0000 (13:20 -0600)]
Merge pull request #8186 from tjhei/doxygen_fixes6

doxygen: two broken lists

5 years agoMerge pull request #8181 from tjhei/examples_folder_other_ccs
Wolfgang Bangerth [Wed, 15 May 2019 19:18:57 +0000 (13:18 -0600)]
Merge pull request #8181 from tjhei/examples_folder_other_ccs

examples: ignore temporary cc files in cmake

5 years agodoxygen: two broken lists 8186/head
Timo Heister [Wed, 15 May 2019 17:31:32 +0000 (11:31 -0600)]
doxygen: two broken lists

5 years agoexamples: ignore temporary cc files in cmake 8181/head
Timo Heister [Wed, 15 May 2019 16:05:30 +0000 (10:05 -0600)]
examples: ignore temporary cc files in cmake

I had an editor leave a temporary cc file in the example directory. This
caused cmake/make to fail in hilarious ways. To try it yourself:
``touch examples/step-63/a#.cc``

By reducing the glob to files that are of the form "step-*.cc", we
should be able to avoid this problem. In my case the file was
".#step-63.cc".

5 years agofollowup small step-63 edits 8178/head
Timo Heister [Wed, 15 May 2019 15:50:53 +0000 (09:50 -0600)]
followup small step-63 edits

5 years agoMerge pull request #8177 from masterleinad/tutorial_description_61_64
Matthias Maier [Wed, 15 May 2019 15:38:01 +0000 (10:38 -0500)]
Merge pull request #8177 from masterleinad/tutorial_description_61_64

Add description for step-61 and step-64

5 years agoAdd description for step-61 and step-64 8177/head
Daniel Arndt [Wed, 15 May 2019 12:54:12 +0000 (08:54 -0400)]
Add description for step-61 and step-64

5 years agoMerge pull request #8079 from tcclevenger/step63-documentation
Martin Kronbichler [Wed, 15 May 2019 12:04:04 +0000 (14:04 +0200)]
Merge pull request #8079 from tcclevenger/step63-documentation

Step-63 Documentation

5 years agoMerge pull request #8173 from masterleinad/fix_general_data_storage
Martin Kronbichler [Wed, 15 May 2019 11:53:56 +0000 (13:53 +0200)]
Merge pull request #8173 from masterleinad/fix_general_data_storage

Fix general_data_storage test

5 years agoFix general_data_storage test 8173/head
Daniel Arndt [Wed, 15 May 2019 04:28:57 +0000 (06:28 +0200)]
Fix general_data_storage test

5 years agoMerge pull request #8171 from tjhei/doxygen_fixes5
David Wells [Wed, 15 May 2019 04:23:44 +0000 (00:23 -0400)]
Merge pull request #8171 from tjhei/doxygen_fixes5

fix doxygen formula errors

5 years agostep-32 text in formula spacing 8171/head
Timo Heister [Tue, 14 May 2019 21:51:40 +0000 (15:51 -0600)]
step-32 text in formula spacing

5 years agotwo more warnings
Timo Heister [Tue, 14 May 2019 21:25:46 +0000 (15:25 -0600)]
two more warnings

5 years agofix doxygen formula errors
Timo Heister [Tue, 14 May 2019 21:17:56 +0000 (15:17 -0600)]
fix doxygen formula errors

5 years agosmall fixes 8079/head
Timo Heister [Tue, 14 May 2019 17:43:28 +0000 (11:43 -0600)]
small fixes

5 years agofix right test function and Peclet def
tcclevenger [Tue, 14 May 2019 17:15:59 +0000 (11:15 -0600)]
fix right test function and Peclet def

5 years agoaddress change requests
Timo Heister [Tue, 14 May 2019 03:44:14 +0000 (21:44 -0600)]
address change requests

5 years agoIntro and small fixes
tcclevenger [Mon, 13 May 2019 23:46:22 +0000 (17:46 -0600)]
Intro and small fixes

5 years agoIntro and Result fixes
Timo Heister [Mon, 13 May 2019 20:08:45 +0000 (14:08 -0600)]
Intro and Result fixes

5 years agochanges for results.dox, intro outline, corrections
tcclevenger [Mon, 13 May 2019 17:13:57 +0000 (11:13 -0600)]
changes for results.dox, intro outline, corrections

5 years agofix prm formatting, expand prm documentation, doc changes, hook in step-63
Timo Heister [Sun, 12 May 2019 16:57:07 +0000 (10:57 -0600)]
fix prm formatting, expand prm documentation, doc changes, hook in step-63

5 years agoChangelog, prm fixes, initial docs, add new parameters
tcclevenger [Fri, 10 May 2019 19:19:57 +0000 (13:19 -0600)]
Changelog, prm fixes, initial docs, add new parameters

5 years agoMerge pull request #8168 from drwells/unify-subscriptor-log
Martin Kronbichler [Tue, 14 May 2019 15:35:12 +0000 (17:35 +0200)]
Merge pull request #8168 from drwells/unify-subscriptor-log

Unify the log entry for Subscriptor.

5 years agoUnify the log entry for Subscriptor. 8168/head
David Wells [Tue, 14 May 2019 14:23:24 +0000 (10:23 -0400)]
Unify the log entry for Subscriptor.

The remark about rvalue references is no longer correct since we
switched, after the ban on rvalue references, to storing a
std::string (which permits rvalues once more).

5 years agoMerge pull request #8166 from tamiko/update_version_requirement
Martin Kronbichler [Tue, 14 May 2019 14:16:42 +0000 (16:16 +0200)]
Merge pull request #8166 from tamiko/update_version_requirement

Require the current version of deal.II.

5 years agoRequire the current version of deal.II. 8166/head
Matthias Maier [Tue, 14 May 2019 14:07:37 +0000 (09:07 -0500)]
Require the current version of deal.II.

5 years agoMerge pull request #8165 from tamiko/master
Martin Kronbichler [Tue, 14 May 2019 14:05:04 +0000 (16:05 +0200)]
Merge pull request #8165 from tamiko/master

update VERSION

5 years agoupdate VERSION 8165/head
Matthias Maier [Tue, 14 May 2019 13:59:02 +0000 (08:59 -0500)]
update VERSION

5 years agoMerge pull request #8164 from tamiko/update_tag_file
Martin Kronbichler [Tue, 14 May 2019 13:56:07 +0000 (15:56 +0200)]
Merge pull request #8164 from tamiko/update_tag_file

Update TAG file

5 years agoMerge pull request #8163 from tamiko/update-changes-file
Martin Kronbichler [Tue, 14 May 2019 13:52:16 +0000 (15:52 +0200)]
Merge pull request #8163 from tamiko/update-changes-file

Replace individual files by one changelog for the whole release.

5 years agoUpdate TAG file 8164/head
Matthias Maier [Tue, 14 May 2019 13:49:07 +0000 (08:49 -0500)]
Update TAG file

5 years agoRemove now obsolete files. 8163/head
Matthias Maier [Tue, 14 May 2019 13:46:30 +0000 (08:46 -0500)]
Remove now obsolete files.

5 years agoUpdate the changelog file for the release.
Matthias Maier [Tue, 14 May 2019 13:46:05 +0000 (08:46 -0500)]
Update the changelog file for the release.

5 years agoMerge pull request #8158 from kronbichler/fix_trilinos_precondition_test
Matthias Maier [Tue, 14 May 2019 12:47:41 +0000 (07:47 -0500)]
Merge pull request #8158 from kronbichler/fix_trilinos_precondition_test

Adapt test file for Trilinos IC precondition

5 years agoMerge pull request #8159 from kronbichler/fix_grid_tools_guess_pt_owner_02
Martin Kronbichler [Tue, 14 May 2019 12:42:30 +0000 (14:42 +0200)]
Merge pull request #8159 from kronbichler/fix_grid_tools_guess_pt_owner_02

Correct memory access in grid_tools_guess_pt_owner_02

5 years agoMerge pull request #8160 from jppelteret/ad-band_aid_sacado_test
Martin Kronbichler [Tue, 14 May 2019 12:26:16 +0000 (14:26 +0200)]
Merge pull request #8160 from jppelteret/ad-band_aid_sacado_test

Band-aid for a failing AD test

5 years agoBand-aid for a failing AD test 8160/head
Jean-Paul Pelteret [Tue, 14 May 2019 12:02:15 +0000 (14:02 +0200)]
Band-aid for a failing AD test

Sacado::Rad::Advar<Sacado::Fad::Dfad<double>> fails for the second derivatives (nan) with the current evaluation point. This fixes the test, but one still wonders what the underlying issue is :-/

5 years agoMerge pull request #8157 from kronbichler/improve-step-59
Bruno Turcksin [Tue, 14 May 2019 12:13:36 +0000 (08:13 -0400)]
Merge pull request #8157 from kronbichler/improve-step-59

Fix some typos in results of step-59

5 years agoMerge pull request #8154 from tamiko/deuglify_step_42
Martin Kronbichler [Tue, 14 May 2019 11:43:20 +0000 (13:43 +0200)]
Merge pull request #8154 from tamiko/deuglify_step_42

deuglify step-42

5 years agoMerge pull request #8151 from masterleinad/fix_icc_19_warning
Martin Kronbichler [Tue, 14 May 2019 10:53:17 +0000 (12:53 +0200)]
Merge pull request #8151 from masterleinad/fix_icc_19_warning

Avoid ICC-19 warning

5 years agoCorrect memory access in grid_tools_guess_pt_owner_02 8159/head
Martin Kronbichler [Tue, 14 May 2019 10:07:28 +0000 (12:07 +0200)]
Correct memory access in grid_tools_guess_pt_owner_02

5 years agoAdapt test file for Trilinos IC precondition 8158/head
Martin Kronbichler [Tue, 14 May 2019 09:10:03 +0000 (11:10 +0200)]
Adapt test file for Trilinos IC precondition

5 years agoFix some typos in results of step-59 8157/head
Martin Kronbichler [Tue, 14 May 2019 08:40:33 +0000 (10:40 +0200)]
Fix some typos in results of step-59

5 years agoMerge pull request #8135 from kronbichler/gcc9-warning-0
Martin Kronbichler [Tue, 14 May 2019 07:15:47 +0000 (09:15 +0200)]
Merge pull request #8135 from kronbichler/gcc9-warning-0

gcc9 warning: Provide copy constructor for class with operator=

5 years agoMerge pull request #8140 from tamiko/cppcheck-1
Timo Heister [Tue, 14 May 2019 05:23:09 +0000 (23:23 -0600)]
Merge pull request #8140 from tamiko/cppcheck-1

cppcheck: Fix include/deal.II/algorithms/general_data_storage.h

5 years agoMerge pull request #8155 from tjhei/tutorial_improvements
Matthias Maier [Tue, 14 May 2019 05:18:59 +0000 (00:18 -0500)]
Merge pull request #8155 from tjhei/tutorial_improvements

improve tutorial layouts

5 years agoimprove tutorial layouts 8155/head
Timo Heister [Tue, 14 May 2019 05:10:29 +0000 (23:10 -0600)]
improve tutorial layouts

- remove a TODO
- replace aspect URL and use ASPECT not Aspect
- fix some formulas
- use table headers

5 years agodeuglify step-42 8154/head
Matthias Maier [Tue, 14 May 2019 05:06:20 +0000 (00:06 -0500)]
deuglify step-42

5 years agoMerge pull request #8148 from drwells/disable-fp-exceptions-hdf5
Matthias Maier [Tue, 14 May 2019 04:18:55 +0000 (23:18 -0500)]
Merge pull request #8148 from drwells/disable-fp-exceptions-hdf5

Disable floating point exceptions in two HDF5 tests.

5 years agoAvoid ICC-19 warning 8151/head
Daniel Arndt [Tue, 14 May 2019 03:40:19 +0000 (05:40 +0200)]
Avoid ICC-19 warning

5 years agoMerge pull request #8150 from masterleinad/missing_header_symengine
David Wells [Tue, 14 May 2019 03:21:44 +0000 (23:21 -0400)]
Merge pull request #8150 from masterleinad/missing_header_symengine

Add missing header in symengine_tensor_operations.h

5 years agoAdd missing header in symengine_tensor_operations.h 8150/head
Daniel Arndt [Tue, 14 May 2019 03:02:38 +0000 (05:02 +0200)]
Add missing header in symengine_tensor_operations.h

5 years agoMerge pull request #8147 from kronbichler/fix_two_tests
Daniel Arndt [Tue, 14 May 2019 02:16:43 +0000 (22:16 -0400)]
Merge pull request #8147 from kronbichler/fix_two_tests

Make two tests more stable

5 years agoMerge pull request #8142 from drwells/cppcheck-9.1
Daniel Arndt [Tue, 14 May 2019 01:16:36 +0000 (21:16 -0400)]
Merge pull request #8142 from drwells/cppcheck-9.1

Cppcheck 9.1

5 years agoCreate vector before assigning 8135/head
Daniel Arndt [Mon, 13 May 2019 22:52:18 +0000 (00:52 +0200)]
Create vector before assigning

5 years agoMerge pull request #8149 from drwells/add-6774-changelog
Timo Heister [Mon, 13 May 2019 22:44:16 +0000 (16:44 -0600)]
Merge pull request #8149 from drwells/add-6774-changelog

Add a changelog entry for 6774.

5 years agoMerge pull request #8139 from tamiko/disable-gcc-9-warning
Matthias Maier [Mon, 13 May 2019 22:41:12 +0000 (17:41 -0500)]
Merge pull request #8139 from tamiko/disable-gcc-9-warning

Ignore -Wdeprecated-copy in external headers

5 years agofix changelog entry format 8149/head
Matthias Maier [Mon, 13 May 2019 22:34:56 +0000 (17:34 -0500)]
fix changelog entry format

5 years agoCppcheck: Fix general_data_storage.h 8140/head
Matthias Maier [Mon, 13 May 2019 21:23:10 +0000 (16:23 -0500)]
Cppcheck: Fix general_data_storage.h

5 years agoAdd a changelog entry for 6774.
David Wells [Mon, 13 May 2019 21:24:21 +0000 (17:24 -0400)]
Add a changelog entry for 6774.

5 years agoDisable floating point exceptions in two HDF5 tests. 8148/head
David Wells [Mon, 13 May 2019 21:03:37 +0000 (17:03 -0400)]
Disable floating point exceptions in two HDF5 tests.

5 years agoMerge pull request #8145 from masterleinad/warn_cuda_threads_native
Martin Kronbichler [Mon, 13 May 2019 19:56:43 +0000 (21:56 +0200)]
Merge pull request #8145 from masterleinad/warn_cuda_threads_native

Warn about using CUDA+Threads+march=native

5 years agocppcheck: initialize a member in the init list. 8142/head
David Wells [Mon, 13 May 2019 17:27:17 +0000 (13:27 -0400)]
cppcheck: initialize a member in the init list.

5 years agocppcheck: Pass a vector by reference.
David Wells [Mon, 13 May 2019 17:27:04 +0000 (13:27 -0400)]
cppcheck: Pass a vector by reference.

5 years agocppcheck: Match variable names in the header and source.
David Wells [Mon, 13 May 2019 17:25:14 +0000 (13:25 -0400)]
cppcheck: Match variable names in the header and source.

5 years agocppcheck: explicitly call a virtual function in a ctor.
David Wells [Mon, 13 May 2019 17:24:58 +0000 (13:24 -0400)]
cppcheck: explicitly call a virtual function in a ctor.

5 years agocppcheck: remove a duplicate static constant.
David Wells [Mon, 13 May 2019 14:58:24 +0000 (10:58 -0400)]
cppcheck: remove a duplicate static constant.

This is the same as the one in the base class.

5 years agoMake point comparison more stable in case of roundoff 8147/head
Martin Kronbichler [Mon, 13 May 2019 19:42:47 +0000 (21:42 +0200)]
Make point comparison more stable in case of roundoff


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