]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
21 months agoMerge pull request #14466 from tamiko/avoid_kokkos_warning
Matthias Maier [Thu, 24 Nov 2022 15:52:46 +0000 (09:52 -0600)]
Merge pull request #14466 from tamiko/avoid_kokkos_warning

CMake: search quietly for kokkos and avoid an unnecessary warning

21 months agoMerge pull request #14465 from tamiko/modernize_cmake_part_2
Matthias Maier [Thu, 24 Nov 2022 15:19:36 +0000 (09:19 -0600)]
Merge pull request #14465 from tamiko/modernize_cmake_part_2

CMake: always export compile_commands.json in deal.II and user projects

21 months agoCMake: search quietly for kokkos and avoid an unnecessary warning 14466/head
Matthias Maier [Thu, 24 Nov 2022 13:12:21 +0000 (07:12 -0600)]
CMake: search quietly for kokkos and avoid an unnecessary warning

21 months agoMerge pull request #14459 from tamiko/make_clang_tidy_config_more_readable
Matthias Maier [Thu, 24 Nov 2022 12:05:20 +0000 (06:05 -0600)]
Merge pull request #14459 from tamiko/make_clang_tidy_config_more_readable

clang-tidy: use line breaks in config, remove nonexistent check

21 months agoCMake: always export compile_commands.json in deal.II and user projects 14465/head
Matthias Maier [Thu, 24 Nov 2022 12:02:21 +0000 (06:02 -0600)]
CMake: always export compile_commands.json in deal.II and user projects

21 months agoMerge pull request #14462 from tamiko/ignore_clangd_files
Wolfgang Bangerth [Wed, 23 Nov 2022 23:38:40 +0000 (16:38 -0700)]
Merge pull request #14462 from tamiko/ignore_clangd_files

gitignore: ignore clangd files and directories

21 months agoMerge pull request #14460 from kronbichler/fix_warnings
Wolfgang Bangerth [Wed, 23 Nov 2022 23:38:16 +0000 (16:38 -0700)]
Merge pull request #14460 from kronbichler/fix_warnings

Fix more warnings about unused variables

21 months agoMerge pull request #14455 from tamiko/fix_cmake_tpetra
Wolfgang Bangerth [Wed, 23 Nov 2022 23:36:30 +0000 (16:36 -0700)]
Merge pull request #14455 from tamiko/fix_cmake_tpetra

CMake: remove forgotten GO = statement in tpetra compatibility check

21 months agogitignore: ignore clangd files and directories 14462/head
Matthias Maier [Wed, 23 Nov 2022 21:01:55 +0000 (15:01 -0600)]
gitignore: ignore clangd files and directories

In order to use clangd it is currently necessary to add some
configuration into a .clangd file. Unfortunately, this is very situation
specific and cannot meaningfully be upstreamed. (For example, I need to
manually specify "-std=c++17" to work around the issue that gcc defaults
to c++17 and clang defaults to c++14.)

While at it also ignore the .cache directory where clangd stores its
index.

21 months agoUpdate .clang-tidy 14459/head
Matthias Maier [Wed, 23 Nov 2022 20:26:46 +0000 (14:26 -0600)]
Update .clang-tidy

Co-authored-by: Wolfgang Bangerth <bangerth@colostate.edu>
21 months agoFix one more warning 14460/head
Martin Kronbichler [Wed, 23 Nov 2022 20:05:47 +0000 (21:05 +0100)]
Fix one more warning

21 months agoFix warning about unused variable in release mode
Martin Kronbichler [Wed, 23 Nov 2022 20:05:39 +0000 (21:05 +0100)]
Fix warning about unused variable in release mode

21 months agoclang-tidy: remove nonexistent check
Matthias Maier [Wed, 23 Nov 2022 18:57:56 +0000 (12:57 -0600)]
clang-tidy: remove nonexistent check

This probably should have read

 -modernize-use-emplace

instead of "use-emplace". Let's simply remove the directive for now.

21 months agoclang-tidy: use line breaks for better readability
Matthias Maier [Wed, 23 Nov 2022 18:57:16 +0000 (12:57 -0600)]
clang-tidy: use line breaks for better readability

21 months agoCMake: remove forgotten GO = statement in tpetra compatibility check 14455/head
Matthias Maier [Wed, 23 Nov 2022 16:47:34 +0000 (10:47 -0600)]
CMake: remove forgotten GO = statement in tpetra compatibility check

Closes: #14372
21 months agoMerge pull request #14451 from drwells/sparsity-pattern-base-cleanup
Daniel Arndt [Wed, 23 Nov 2022 15:03:35 +0000 (10:03 -0500)]
Merge pull request #14451 from drwells/sparsity-pattern-base-cleanup

21 months agoMerge pull request #14452 from tamiko/avoid_a_warning
Timo Heister [Wed, 23 Nov 2022 14:36:38 +0000 (09:36 -0500)]
Merge pull request #14452 from tamiko/avoid_a_warning

GridGenerator: avoid a warning in release mode

21 months agoGridGenerators: modernize a cell loop and use range-based for 14452/head
Matthias Maier [Wed, 23 Nov 2022 10:25:07 +0000 (04:25 -0600)]
GridGenerators: modernize a cell loop and use range-based for

21 months agoGridGenerator: avoid a warning in release mode
Matthias Maier [Wed, 23 Nov 2022 10:21:13 +0000 (04:21 -0600)]
GridGenerator: avoid a warning in release mode

21 months agoMerge pull request #14365 from masterleinad/kokkos_bundled
Matthias Maier [Wed, 23 Nov 2022 10:00:22 +0000 (04:00 -0600)]
Merge pull request #14365 from masterleinad/kokkos_bundled

Make Kokkos a required dependency and bundle Kokkos 3.7.00

21 months agoClean up some sparsity-related header inclusions. 14451/head
David Wells [Sat, 5 Nov 2022 18:17:05 +0000 (14:17 -0400)]
Clean up some sparsity-related header inclusions.

21 months agoRemove SPARSITY_PATTERNS from template-arguments.in
David Wells [Sat, 5 Nov 2022 15:52:51 +0000 (11:52 -0400)]
Remove SPARSITY_PATTERNS from template-arguments.in

We no longer need it! Taken together, removing the templates over the sparsity
pattern type lowers the number of symbols in the debug library build from 813005
to 811893.

21 months agoMerge pull request #14433 from drwells/sparsity-pattern-base-multigrid
David Wells [Tue, 22 Nov 2022 18:35:24 +0000 (13:35 -0500)]
Merge pull request #14433 from drwells/sparsity-pattern-base-multigrid

multigrid tools: Remove template on sparsity pattern type.

21 months agoMerge pull request #14392 from bangerth/cxx17
David Wells [Tue, 22 Nov 2022 16:43:37 +0000 (11:43 -0500)]
Merge pull request #14392 from bangerth/cxx17

Avoid boost::optional/variant in favor of std_cxx17::variant/optional.

21 months agomultigrid tools: Remove template on sparsity pattern type. 14433/head
David Wells [Sat, 5 Nov 2022 14:12:37 +0000 (10:12 -0400)]
multigrid tools: Remove template on sparsity pattern type.

21 months agoAvoid "!." 14365/head
Daniel Arndt [Tue, 22 Nov 2022 15:03:00 +0000 (10:03 -0500)]
Avoid "!."

21 months agoMake Kokkos a required dependency and bundle Kokkos 3.7.00
Daniel Arndt [Tue, 22 Nov 2022 14:57:38 +0000 (09:57 -0500)]
Make Kokkos a required dependency and bundle Kokkos 3.7.00

21 months agoMerge pull request #14435 from masterleinad/fix_trilinos_kokkos_flags
David Wells [Tue, 22 Nov 2022 14:44:07 +0000 (09:44 -0500)]
Merge pull request #14435 from masterleinad/fix_trilinos_kokkos_flags

Fix flags for Trilinos+Kokkos

21 months agoMerge pull request #14441 from drwells/sparsity-base-api
Martin Kronbichler [Tue, 22 Nov 2022 13:37:20 +0000 (14:37 +0100)]
Merge pull request #14441 from drwells/sparsity-base-api

SparsityPatternBase: redo add_entries() to take pairs.

21 months agoMerge pull request #14445 from lethe-cfd/particles_periodicity
Martin Kronbichler [Tue, 22 Nov 2022 12:25:41 +0000 (13:25 +0100)]
Merge pull request #14445 from lethe-cfd/particles_periodicity

Fix the generation of ghost particles when there are periodic boundary conditions in a triangulation

21 months agoMerge pull request #14450 from masterleinad/fix_actions_v2_E3
Marc Fehling [Tue, 22 Nov 2022 01:45:44 +0000 (02:45 +0100)]
Merge pull request #14450 from masterleinad/fix_actions_v2_E3

Bump actions/checkout from 2 to 3

21 months agoMerge pull request #14448 from bangerth/vtu-6
Daniel Arndt [Tue, 22 Nov 2022 01:05:58 +0000 (20:05 -0500)]
Merge pull request #14448 from bangerth/vtu-6

21 months agoMerge pull request #14449 from bangerth/vtu-9
Timo Heister [Mon, 21 Nov 2022 22:34:53 +0000 (17:34 -0500)]
Merge pull request #14449 from bangerth/vtu-9

Move declaration of vtu_stream to where it is used.

21 months agoBump actions/checkout from 2 to 3 14450/head
Daniel Arndt [Mon, 21 Nov 2022 22:08:24 +0000 (17:08 -0500)]
Bump actions/checkout from 2 to 3

21 months agoAvoid boost::optional/variant in favor of std_cxx17::variant/optional. 14392/head
Wolfgang Bangerth [Fri, 4 Nov 2022 16:29:37 +0000 (10:29 -0600)]
Avoid boost::optional/variant in favor of std_cxx17::variant/optional.

21 months agoMerge pull request #14437 from quangx/fix-step76-document
Daniel Arndt [Mon, 21 Nov 2022 21:53:37 +0000 (16:53 -0500)]
Merge pull request #14437 from quangx/fix-step76-document

21 months agoRedo SparsityPatternBase::add_entries() to use pairs. 14441/head
David Wells [Mon, 21 Nov 2022 20:47:59 +0000 (15:47 -0500)]
Redo SparsityPatternBase::add_entries() to use pairs.

21 months agoRemove two lines that were added by mistake 14445/head
Bruno Blais [Mon, 21 Nov 2022 21:07:13 +0000 (16:07 -0500)]
Remove two lines that were added by mistake

21 months agoUpdate doc/news/changes/minor/20221118Blais
Bruno Blais [Mon, 21 Nov 2022 21:06:01 +0000 (16:06 -0500)]
Update doc/news/changes/minor/20221118Blais

Co-authored-by: Martin Kronbichler <martin.kronbichler@uni-a.de>
21 months agoFix indentation
Bruno Blais [Mon, 21 Nov 2022 19:20:21 +0000 (14:20 -0500)]
Fix indentation

21 months agoMove declaration of vtu_stream to where it is used. 14449/head
Wolfgang Bangerth [Mon, 21 Nov 2022 18:02:18 +0000 (11:02 -0700)]
Move declaration of vtu_stream to where it is used.

While there, also use the underlying stream rather than vtu_out where possible.

21 months agofix typos 14437/head
Quang Hoang [Fri, 18 Nov 2022 20:36:28 +0000 (15:36 -0500)]
fix typos

Fix reference step 59

fix typo step-79

fix typo results.dox

step-76 doc fix

add changes from indent

21 months agoUpdate test documentation
Bruno Blais [Mon, 21 Nov 2022 18:17:58 +0000 (13:17 -0500)]
Update test documentation

21 months agoMerge pull request #14447 from tjhei/fix-indent-script
David Wells [Mon, 21 Nov 2022 18:11:13 +0000 (13:11 -0500)]
Merge pull request #14447 from tjhei/fix-indent-script

fix indent script

21 months agoUse variable-sized std::array instead of fixed number of arguments. 14448/head
Wolfgang Bangerth [Mon, 21 Nov 2022 05:20:43 +0000 (22:20 -0700)]
Use variable-sized std::array instead of fixed number of arguments.

21 months agoMerge pull request #14446 from bangerth/vtu-5
David Wells [Mon, 21 Nov 2022 17:40:14 +0000 (12:40 -0500)]
Merge pull request #14446 from bangerth/vtu-5

Simplify code

21 months agoApply suggestions from code review
Bruno Blais [Mon, 21 Nov 2022 16:12:19 +0000 (11:12 -0500)]
Apply suggestions from code review

Co-authored-by: Rene Gassmoeller <rene.gassmoeller@mailbox.org>
21 months agoUpdate include/deal.II/grid/grid_tools_cache.h
Bruno Blais [Mon, 21 Nov 2022 16:11:15 +0000 (11:11 -0500)]
Update include/deal.II/grid/grid_tools_cache.h

Co-authored-by: Rene Gassmoeller <rene.gassmoeller@mailbox.org>
21 months agofix indent script 14447/head
Timo Heister [Mon, 21 Nov 2022 15:44:06 +0000 (10:44 -0500)]
fix indent script

21 months agoMerge pull request #14444 from bangerth/ident
David Wells [Mon, 21 Nov 2022 14:33:26 +0000 (09:33 -0500)]
Merge pull request #14444 from bangerth/ident

Add a bit of documentation.

21 months agoMerge pull request #14429 from masterleinad/cuda_build_tests
Daniel Arndt [Mon, 21 Nov 2022 13:06:02 +0000 (08:06 -0500)]
Merge pull request #14429 from masterleinad/cuda_build_tests

22 months agoExchange ghost uses vertices w ghost_neighbors
Bruno Blais [Mon, 21 Nov 2022 01:41:51 +0000 (20:41 -0500)]
Exchange ghost uses vertices w ghost_neighbors

22 months agoAdd test for new periodic exchange ghost
Bruno Blais [Mon, 21 Nov 2022 01:12:14 +0000 (20:12 -0500)]
Add test for new periodic exchange ghost

22 months agoUpdate source/particles/particle_handler.cc
Bruno Blais [Sun, 20 Nov 2022 14:46:16 +0000 (06:46 -0800)]
Update source/particles/particle_handler.cc

Co-authored-by: Rene Gassmoeller <rene.gassmoeller@mailbox.org>
22 months agoUpdate source/particles/particle_handler.cc
Bruno Blais [Sun, 20 Nov 2022 14:38:12 +0000 (06:38 -0800)]
Update source/particles/particle_handler.cc

Co-authored-by: Rene Gassmoeller <rene.gassmoeller@mailbox.org>
22 months agoConvert yet another function. 14446/head
Wolfgang Bangerth [Sun, 20 Nov 2022 01:23:44 +0000 (18:23 -0700)]
Convert yet another function.

22 months agoSimplify yet more code.
Wolfgang Bangerth [Fri, 18 Nov 2022 23:03:09 +0000 (16:03 -0700)]
Simplify yet more code.

22 months agoSimplify more code.
Wolfgang Bangerth [Fri, 18 Nov 2022 22:58:45 +0000 (15:58 -0700)]
Simplify more code.

22 months agoAdd a bit of documentation. 14444/head
Wolfgang Bangerth [Fri, 18 Nov 2022 16:17:37 +0000 (09:17 -0700)]
Add a bit of documentation.

22 months agoMerge pull request #14424 from masterleinad/kokkos_print_backends_and_archs
Matthias Maier [Sat, 19 Nov 2022 03:27:43 +0000 (21:27 -0600)]
Merge pull request #14424 from masterleinad/kokkos_print_backends_and_archs

Print backends and architectures for Kokkos

22 months agoPrint backends and architectures for Kokkos 14424/head
Daniel Arndt [Tue, 15 Nov 2022 18:15:10 +0000 (12:15 -0600)]
Print backends and architectures for Kokkos

22 months agoOnly pass Kokkos flags 14435/head
Daniel Arndt [Thu, 17 Nov 2022 14:05:54 +0000 (14:05 +0000)]
Only pass Kokkos flags

22 months agoRemove optimization flags from Trilinos flags
Daniel Arndt [Thu, 17 Nov 2022 04:55:41 +0000 (04:55 +0000)]
Remove optimization flags from Trilinos flags

22 months agoFix flags for Trilinos+Kokkos
Daniel Arndt [Wed, 16 Nov 2022 17:31:53 +0000 (17:31 +0000)]
Fix flags for Trilinos+Kokkos

22 months agoBuild CUDA tests in CUDA CI 14429/head
Daniel Arndt [Sat, 19 Nov 2022 00:49:41 +0000 (18:49 -0600)]
Build CUDA tests in CUDA CI

22 months agoUpdate doc/news/changes/minor/20221118Blais
Bruno Blais [Sat, 19 Nov 2022 00:46:59 +0000 (16:46 -0800)]
Update doc/news/changes/minor/20221118Blais

Co-authored-by: Timo Heister <timo.heister@gmail.com>
22 months agoSimplify some code.
Wolfgang Bangerth [Fri, 18 Nov 2022 22:51:49 +0000 (15:51 -0700)]
Simplify some code.

22 months agoAdded contributor file
Bruno Blais [Fri, 18 Nov 2022 21:22:24 +0000 (16:22 -0500)]
Added contributor file

22 months agoFix indentation
Bruno Blais [Fri, 18 Nov 2022 21:15:00 +0000 (16:15 -0500)]
Fix indentation

22 months agoFianlize documentation
Bruno Blais [Fri, 18 Nov 2022 21:14:15 +0000 (16:14 -0500)]
Fianlize documentation

22 months agoMerge pull request #14442 from marcfehling/vectorcopy
David Wells [Fri, 18 Nov 2022 04:01:11 +0000 (23:01 -0500)]
Merge pull request #14442 from marcfehling/vectorcopy

Use copy function internally in LA::d::Vector.

22 months agoMerge pull request #14438 from bangerth/petsc
Daniel Arndt [Thu, 17 Nov 2022 23:21:49 +0000 (17:21 -0600)]
Merge pull request #14438 from bangerth/petsc

22 months agoFirst working version
Bruno Blais [Thu, 17 Nov 2022 21:52:19 +0000 (16:52 -0500)]
First working version

22 months agoRe-introduce (now deprecated) old constructor. 14438/head
Wolfgang Bangerth [Thu, 17 Nov 2022 20:46:24 +0000 (13:46 -0700)]
Re-introduce (now deprecated) old constructor.

22 months agoMerge pull request #14436 from Rombur/cuda_ice
Timo Heister [Thu, 17 Nov 2022 20:28:15 +0000 (15:28 -0500)]
Merge pull request #14436 from Rombur/cuda_ice

Update CI workflow to CUDA 11.8

22 months agoMerge pull request #14421 from bangerth/vtu-3
Bruno Turcksin [Thu, 17 Nov 2022 16:28:05 +0000 (11:28 -0500)]
Merge pull request #14421 from bangerth/vtu-3

22 months agoInstall boost 14436/head
Bruno Turcksin [Thu, 17 Nov 2022 15:57:14 +0000 (15:57 +0000)]
Install boost

22 months agoAdd a changelog.
Wolfgang Bangerth [Thu, 17 Nov 2022 04:33:33 +0000 (21:33 -0700)]
Add a changelog.

22 months agoSimplify step-40.
Wolfgang Bangerth [Thu, 17 Nov 2022 00:19:50 +0000 (17:19 -0700)]
Simplify step-40.

22 months agoAvoid the use of deprecated constructors.
Wolfgang Bangerth [Thu, 17 Nov 2022 00:19:37 +0000 (17:19 -0700)]
Avoid the use of deprecated constructors.

22 months agoDeprecate the use of PETScWrapper::Solver* constructors that take an MPI communicator.
Wolfgang Bangerth [Thu, 17 Nov 2022 00:13:10 +0000 (17:13 -0700)]
Deprecate the use of PETScWrapper::Solver* constructors that take an MPI communicator.

22 months agoSimplify code.
Wolfgang Bangerth [Wed, 16 Nov 2022 21:58:27 +0000 (14:58 -0700)]
Simplify code.

22 months agoRemove the need to store the MPI communicator in PETScWrappers::SolverBase.
Wolfgang Bangerth [Wed, 16 Nov 2022 21:52:55 +0000 (14:52 -0700)]
Remove the need to store the MPI communicator in PETScWrappers::SolverBase.

22 months agoProvide the ability to query the communicator from PETSc precondiditioners.
Wolfgang Bangerth [Wed, 16 Nov 2022 21:52:19 +0000 (14:52 -0700)]
Provide the ability to query the communicator from PETSc precondiditioners.

22 months agoMerge pull request #14434 from drwells/sparsity-pattern-base-dof-tools
Daniel Arndt [Thu, 17 Nov 2022 15:29:35 +0000 (09:29 -0600)]
Merge pull request #14434 from drwells/sparsity-pattern-base-dof-tools

22 months agoMerge pull request #14439 from bangerth/comment
Timo Heister [Thu, 17 Nov 2022 12:47:41 +0000 (07:47 -0500)]
Merge pull request #14439 from bangerth/comment

Fix a misspelling in a comment.

22 months agoFix a misspelling in a comment. 14439/head
Wolfgang Bangerth [Thu, 17 Nov 2022 04:51:27 +0000 (21:51 -0700)]
Fix a misspelling in a comment.

22 months agoDoFTools: use some ranged-for loops 14434/head
David Wells [Wed, 16 Nov 2022 23:06:22 +0000 (18:06 -0500)]
DoFTools: use some ranged-for loops

22 months agoUpdate CI workflow to CUDA 11.8
Bruno Turcksin [Wed, 16 Nov 2022 20:23:07 +0000 (20:23 +0000)]
Update CI workflow to CUDA 11.8

22 months agoDoFTools: convert some functions to use add_row_entries().
David Wells [Wed, 16 Nov 2022 18:32:52 +0000 (13:32 -0500)]
DoFTools: convert some functions to use add_row_entries().

22 months agoSparsityPattern: add an assertion in input data.
David Wells [Wed, 16 Nov 2022 18:30:31 +0000 (13:30 -0500)]
SparsityPattern: add an assertion in input data.

22 months agoMerge pull request #14427 from marcfehling/reinit
Martin Kronbichler [Wed, 16 Nov 2022 15:38:44 +0000 (16:38 +0100)]
Merge pull request #14427 from marcfehling/reinit

Make TrilinosWrappers::MPI::Vector::reinit accept Utilities::MPI::Partitioner.

22 months agoMerge pull request #14432 from drwells/sparsity-pattern-base-particles
Martin Kronbichler [Wed, 16 Nov 2022 15:37:39 +0000 (16:37 +0100)]
Merge pull request #14432 from drwells/sparsity-pattern-base-particles

Particles: Remove template on sparsity pattern type.

22 months agoMerge pull request #14431 from drwells/sparsity-pattern-base-nonmatching
Daniel Arndt [Wed, 16 Nov 2022 05:02:32 +0000 (23:02 -0600)]
Merge pull request #14431 from drwells/sparsity-pattern-base-nonmatching

22 months agoMerge pull request #14425 from Rombur/belos
Wolfgang Bangerth [Wed, 16 Nov 2022 03:28:37 +0000 (20:28 -0700)]
Merge pull request #14425 from Rombur/belos

Guard Belos code with macros

22 months agoDoFTools: Remove template on sparsity pattern type.
David Wells [Sat, 5 Nov 2022 15:42:24 +0000 (11:42 -0400)]
DoFTools: Remove template on sparsity pattern type.

22 months agoParticles: Remove template on sparsity pattern type. 14432/head
David Wells [Sat, 5 Nov 2022 02:33:46 +0000 (22:33 -0400)]
Particles: Remove template on sparsity pattern type.

22 months agoNonMatching: Remove template on sparsity pattern type. 14431/head
David Wells [Sat, 5 Nov 2022 02:10:56 +0000 (22:10 -0400)]
NonMatching: Remove template on sparsity pattern type.

This is no longer necessary since all of our SparsityPatterns inherit from
SparsityPatternBase. This file was previously the most expensive to compile in
the entire library so cutting down the number of instantiations by a factor of 4
or 6 (with Trilinos) is quite nice.

22 months agoMerge pull request #14415 from tamiko/ninja_workaround
Daniel Arndt [Tue, 15 Nov 2022 21:40:52 +0000 (15:40 -0600)]
Merge pull request #14415 from tamiko/ninja_workaround

22 months agoUse copy function internally in LA::d::Vector. 14442/head
Marc Fehling [Tue, 15 Nov 2022 21:40:19 +0000 (14:40 -0700)]
Use copy function internally in LA::d::Vector.


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