]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
7 years agoMerge pull request #4166 from masterleinad/restrict_parallel_petsc_8_5
Daniel Arndt [Fri, 31 Mar 2017 15:30:02 +0000 (17:30 +0200)]
Merge pull request #4166 from masterleinad/restrict_parallel_petsc_8_5

[8.5] take over #4165: Restrict tests requiring a parallel PETSc

7 years agoRestrict tests requiring a parallel PETSc 4166/head
Daniel Arndt [Fri, 31 Mar 2017 14:03:36 +0000 (16:03 +0200)]
Restrict tests requiring a parallel PETSc

7 years agoMerge pull request #4164 from masterleinad/take_over_4156
Wolfgang Bangerth [Fri, 31 Mar 2017 12:39:12 +0000 (06:39 -0600)]
Merge pull request #4164 from masterleinad/take_over_4156

[8.5] take over #4156: fix cmake regex for finding MPI version

7 years agofix cmake regex for finding MPI version 4164/head
Timo Heister [Thu, 30 Mar 2017 21:37:53 +0000 (17:37 -0400)]
fix cmake regex for finding MPI version

cmake regex is greedy, which means that the old regex
MPI_VERSION.*([0-9]+)
would only put the last digit of the version into the group \1 because
.* consumes the others. Fix this.

7 years agoMerge pull request #4161 from tamiko/pr_4160-8.5
David Wells [Fri, 31 Mar 2017 03:40:28 +0000 (23:40 -0400)]
Merge pull request #4161 from tamiko/pr_4160-8.5

[8.5] Examples: Require MPI for step-18

7 years agoMerge pull request #4154 from tjhei/r_8_5_pr4152
Matthias Maier [Thu, 30 Mar 2017 23:28:12 +0000 (18:28 -0500)]
Merge pull request #4154 from tjhei/r_8_5_pr4152

[8.5] take over #4152: fix step-55

7 years agoExamples: Require MPI for step-18 4161/head
Matthias Maier [Thu, 30 Mar 2017 23:23:02 +0000 (18:23 -0500)]
Examples: Require MPI for step-18

7 years agofix step-55 4153/head 4154/head
Timo Heister [Thu, 30 Mar 2017 19:09:45 +0000 (15:09 -0400)]
fix step-55

This causes crashes with PETSc and solver convergence issues with
Trilinos with more than one rank.

7 years agoMerge pull request #4148 from tamiko/cmake_2.8.8_compatibility
Matthias Maier [Thu, 30 Mar 2017 19:03:30 +0000 (14:03 -0500)]
Merge pull request #4148 from tamiko/cmake_2.8.8_compatibility

CMake: Compatibility with 2.8.8, do not build examples per default

7 years agoCMake: Default to not building examples 4148/head
Matthias Maier [Thu, 30 Mar 2017 16:45:54 +0000 (11:45 -0500)]
CMake: Default to not building examples

7 years agoCMake: Bugfix: Ensure compatibility with cmake-2.8.8
Matthias Maier [Thu, 30 Mar 2017 16:40:57 +0000 (11:40 -0500)]
CMake: Bugfix: Ensure compatibility with cmake-2.8.8

7 years agoMerge pull request #4144 from kronbichler/take_over_documentation
Timo Heister [Thu, 30 Mar 2017 14:42:51 +0000 (10:42 -0400)]
Merge pull request #4144 from kronbichler/take_over_documentation

[8.5] Take over #4138: Update documentation of FEEvaluation

7 years agoUpdate documentation of FEEvaluation 4144/head
Martin Kronbichler [Thu, 30 Mar 2017 08:49:04 +0000 (10:49 +0200)]
Update documentation of FEEvaluation

7 years agoMerge pull request #4137 from drwells/fix-double-angle-bracket
Wolfgang Bangerth [Wed, 29 Mar 2017 13:18:56 +0000 (07:18 -0600)]
Merge pull request #4137 from drwells/fix-double-angle-bracket

Convert a template '>>' to a '> >'.

7 years agoConvert a template '>>' to a '> >'. 4137/head
David Wells [Wed, 29 Mar 2017 13:06:25 +0000 (09:06 -0400)]
Convert a template '>>' to a '> >'.

7 years agoMerge pull request #4136 from masterleinad/takeover_astyle
Wolfgang Bangerth [Wed, 29 Mar 2017 12:11:57 +0000 (06:11 -0600)]
Merge pull request #4136 from masterleinad/takeover_astyle

[8.5] take over #4125: Update documentation on location of astyle.rc.

7 years agoMerge pull request #4135 from masterleinad/takeover_abf_03
Wolfgang Bangerth [Wed, 29 Mar 2017 12:11:31 +0000 (06:11 -0600)]
Merge pull request #4135 from masterleinad/takeover_abf_03

[8.5] take over #4134: Fix test on some platforms

7 years agoUpdate documentation on location of astyle.rc. 4136/head
Simon Sticko [Tue, 28 Mar 2017 07:13:03 +0000 (09:13 +0200)]
Update documentation on location of astyle.rc.

7 years agoFix test on some platforms 4135/head
Martin Kronbichler [Wed, 29 Mar 2017 07:18:55 +0000 (09:18 +0200)]
Fix test on some platforms

7 years agoMerge pull request #4132 from drwells/fix-quick-tests-8.5
Daniel Arndt [Wed, 29 Mar 2017 00:14:27 +0000 (02:14 +0200)]
Merge pull request #4132 from drwells/fix-quick-tests-8.5

[8.5] take over #4131: Remove tests.h dependency from the quick tests.

7 years agoRemove tests.h dependency from the quick tests. 4132/head
David Wells [Tue, 28 Mar 2017 21:03:55 +0000 (17:03 -0400)]
Remove tests.h dependency from the quick tests.

The release candidates ship without this file.

7 years agoMerge pull request #4129 from drwells/add-user-version-flag v8.5.0-rc1
Matthias Maier [Tue, 28 Mar 2017 17:01:43 +0000 (12:01 -0500)]
Merge pull request #4129 from drwells/add-user-version-flag

Always add the user version flag.

7 years agoMerge pull request #4130 from tjhei/r_8_5_pr4127
Martin Kronbichler [Tue, 28 Mar 2017 16:51:59 +0000 (18:51 +0200)]
Merge pull request #4130 from tjhei/r_8_5_pr4127

[8.5] take over #4127: Fix bug in matrix-free evaluation kernel for degree 9 in 2D

7 years agoMake the stack size selection a single parameter 4130/head
Martin Kronbichler [Tue, 28 Mar 2017 14:08:07 +0000 (16:08 +0200)]
Make the stack size selection a single parameter

7 years agoFix bug in matrix-free evaluation kernel for degree 9 in 2D
Martin Kronbichler [Tue, 28 Mar 2017 10:11:49 +0000 (12:11 +0200)]
Fix bug in matrix-free evaluation kernel for degree 9 in 2D

7 years agoAlways add the user version flag. 4129/head
David Wells [Tue, 28 Mar 2017 16:16:18 +0000 (12:16 -0400)]
Always add the user version flag.

This gets around a bug where, if a user requests '-std=c++03' and is using a
compiler which defaults to C++11 or newer (e.g., GCC 6) then the library is
compiled with the default language flag (e.g., gnu++14) but
DEAL_II_WITH_CXX11=OFF: this causes compilation errors with boost::optional.

7 years agoMerge pull request #4124 from tjhei/r_8_5_pr4122
Wolfgang Bangerth [Mon, 27 Mar 2017 21:48:35 +0000 (15:48 -0600)]
Merge pull request #4124 from tjhei/r_8_5_pr4122

[8.5] take over #4122: Avoid multiple deprecation warnings in steps

7 years agofix step-41 warning 4124/head
Timo Heister [Mon, 27 Mar 2017 19:32:56 +0000 (15:32 -0400)]
fix step-41 warning

7 years agoAvoid multigrid deprecation warnings in step-16/39
Timo Heister [Mon, 27 Mar 2017 19:16:41 +0000 (15:16 -0400)]
Avoid multigrid deprecation warnings in step-16/39

7 years agoMerge pull request #4121 from tjhei/p8.5-doxygen
Wolfgang Bangerth [Mon, 27 Mar 2017 18:47:59 +0000 (12:47 -0600)]
Merge pull request #4121 from tjhei/p8.5-doxygen

[8.5] fix doxygen errors

7 years agofix doxygen errors 4121/head
Timo Heister [Mon, 27 Mar 2017 18:43:09 +0000 (14:43 -0400)]
fix doxygen errors

7 years agoMerge pull request #4118 from tamiko/remove_cuda
Daniel Arndt [Mon, 27 Mar 2017 12:20:57 +0000 (14:20 +0200)]
Merge pull request #4118 from tamiko/remove_cuda

[8.5] CMake: Remove CUDA feature

7 years agoCMake: Remove CUDA feature 4118/head
Matthias Maier [Mon, 27 Mar 2017 01:41:28 +0000 (20:41 -0500)]
CMake: Remove CUDA feature

7 years agoMerge pull request #4116 from bangerth/fix-abf-02
Daniel Arndt [Sun, 26 Mar 2017 21:58:56 +0000 (23:58 +0200)]
Merge pull request #4116 from bangerth/fix-abf-02

Fix FE_ABF::convert_generalized_support_point_values_to_nodal_values

7 years agoFix FE_ABF::convert_generalized_support_point_values_to_nodal_values 4116/head
Daniel Arndt [Sun, 26 Mar 2017 15:44:07 +0000 (17:44 +0200)]
Fix FE_ABF::convert_generalized_support_point_values_to_nodal_values

7 years agoremoved unfinished steps (release tasks step 8).
Timo Heister [Fri, 24 Mar 2017 21:26:53 +0000 (17:26 -0400)]
removed unfinished steps (release tasks step 8).

7 years agoadd AUTHORS
Timo Heister [Fri, 24 Mar 2017 21:04:01 +0000 (17:04 -0400)]
add AUTHORS

7 years agoMerge pull request #4112 from tjhei/r85_pr4108
Wolfgang Bangerth [Fri, 24 Mar 2017 15:02:01 +0000 (09:02 -0600)]
Merge pull request #4112 from tjhei/r85_pr4108

[for 8.5] take over #4108: Make sure to clean all data before filling MG transfer data fields

7 years agoMake sure to clean all data before filling MG transfer data fields 4112/head
Martin Kronbichler [Fri, 24 Mar 2017 08:55:25 +0000 (09:55 +0100)]
Make sure to clean all data before filling MG transfer data fields

7 years agoupdate VERSION
Timo Heister [Thu, 23 Mar 2017 19:15:14 +0000 (15:15 -0400)]
update VERSION

7 years agoMerge pull request #4099 from tjhei/doxygen_fixes
Wolfgang Bangerth [Thu, 23 Mar 2017 18:40:24 +0000 (12:40 -0600)]
Merge pull request #4099 from tjhei/doxygen_fixes

8.5 task: doxygen formatting fixes

7 years agoMerge pull request #4100 from tjhei/tag_filename
Wolfgang Bangerth [Thu, 23 Mar 2017 16:29:02 +0000 (10:29 -0600)]
Merge pull request #4100 from tjhei/tag_filename

8.5 task: update TAG file URL

7 years agoaddress comment 4099/head
Timo Heister [Thu, 23 Mar 2017 16:28:29 +0000 (12:28 -0400)]
address comment

7 years agoMerge pull request #4098 from bangerth/update-changes-file
Timo Heister [Thu, 23 Mar 2017 16:23:39 +0000 (12:23 -0400)]
Merge pull request #4098 from bangerth/update-changes-file

Replace individual files by one changelog for the whole release.

7 years agoAdjust for the upcoming release. 4098/head
Wolfgang Bangerth [Thu, 23 Mar 2017 16:15:02 +0000 (10:15 -0600)]
Adjust for the upcoming release.

7 years agoRemove now obsolete files.
Wolfgang Bangerth [Thu, 23 Mar 2017 15:55:43 +0000 (09:55 -0600)]
Remove now obsolete files.

7 years agoUpdate the changelog file for the release.
Wolfgang Bangerth [Thu, 23 Mar 2017 15:56:54 +0000 (09:56 -0600)]
Update the changelog file for the release.

7 years agoMerge pull request #4101 from bangerth/update-copyright
Timo Heister [Thu, 23 Mar 2017 16:14:20 +0000 (12:14 -0400)]
Merge pull request #4101 from bangerth/update-copyright

Update copyright years.

7 years agoUpdate copyright years. 4101/head
Wolfgang Bangerth [Thu, 23 Mar 2017 16:08:23 +0000 (10:08 -0600)]
Update copyright years.

7 years ago8.5 task: update TAG file URL 4100/head
Timo Heister [Thu, 23 Mar 2017 16:07:21 +0000 (12:07 -0400)]
8.5 task: update TAG file URL

7 years agoMerge pull request #4097 from masterleinad/check_cell_loop
Daniel Arndt [Thu, 23 Mar 2017 16:02:10 +0000 (17:02 +0100)]
Merge pull request #4097 from masterleinad/check_cell_loop

Check array access in MatrixFree::cell_loop

7 years agodoxygen formatting fixes
Timo Heister [Thu, 23 Mar 2017 15:57:07 +0000 (11:57 -0400)]
doxygen formatting fixes

- wrong indentation
- code blocks not marked correctly
- some @ref fixes

7 years agoCheck array access in MatrixFree::cell_loop 4097/head
Daniel Arndt [Thu, 23 Mar 2017 14:39:49 +0000 (15:39 +0100)]
Check array access in MatrixFree::cell_loop

7 years agoMerge pull request #4096 from kronbichler/fix_clang_warning_mapping
Timo Heister [Thu, 23 Mar 2017 13:44:04 +0000 (09:44 -0400)]
Merge pull request #4096 from kronbichler/fix_clang_warning_mapping

Fix warning with clang compiler

7 years agoMerge pull request #4064 from bangerth/replace-FE_interpolate
Luca Heltai [Thu, 23 Mar 2017 12:32:30 +0000 (13:32 +0100)]
Merge pull request #4064 from bangerth/replace-FE_interpolate

Replace FE::interpolate() by FE::convert_support_point_values_to_nodal_values().

7 years agoAdd warning with clang compiler 4096/head
Martin Kronbichler [Thu, 23 Mar 2017 12:23:21 +0000 (13:23 +0100)]
Add warning with clang compiler

7 years agoMerge pull request #3886 from kronbichler/master
Wolfgang Bangerth [Wed, 22 Mar 2017 21:49:17 +0000 (15:49 -0600)]
Merge pull request #3886 from kronbichler/master

Fix support points on quad for MappingQGeneric and StraightBoundary.

7 years agoMerge pull request #4094 from masterleinad/fix_indexset_asc_etc
Wolfgang Bangerth [Wed, 22 Mar 2017 21:34:46 +0000 (15:34 -0600)]
Merge pull request #4094 from masterleinad/fix_indexset_asc_etc

Refactor and fix IndexSet::is_ascending_and_one_to_one

7 years agoMerge pull request #4095 from masterleinad/fix_sparsity_compress
Timo Heister [Wed, 22 Mar 2017 20:53:14 +0000 (16:53 -0400)]
Merge pull request #4095 from masterleinad/fix_sparsity_compress

Check access in SparsityPatter::compress()

7 years agoMerge pull request #4091 from tamiko/opencascade_compatibility
Luca Heltai [Wed, 22 Mar 2017 20:01:58 +0000 (21:01 +0100)]
Merge pull request #4091 from tamiko/opencascade_compatibility

Opencascade 7 fixes

7 years agoWork on review comments 3886/head
Martin Kronbichler [Wed, 22 Mar 2017 19:20:30 +0000 (20:20 +0100)]
Work on review comments

7 years agoPerformance improvements. Augment documentation.
Martin Kronbichler [Sun, 19 Mar 2017 09:16:53 +0000 (10:16 +0100)]
Performance improvements. Augment documentation.

7 years agoFixed closest_point_to_shape. 4091/head
Luca Heltai [Wed, 22 Mar 2017 18:45:37 +0000 (19:45 +0100)]
Fixed closest_point_to_shape.

7 years agoFixed circle_normal_projection.
Luca Heltai [Wed, 22 Mar 2017 18:39:40 +0000 (19:39 +0100)]
Fixed circle_normal_projection.

7 years agoCheck access in SparsityPatter::compress() 4095/head
Daniel Arndt [Wed, 22 Mar 2017 18:11:52 +0000 (19:11 +0100)]
Check access in SparsityPatter::compress()

7 years agoRefactor and fix IndexSet::is_ascending_ad_one_to_one 4094/head
Daniel Arndt [Wed, 22 Mar 2017 17:17:06 +0000 (18:17 +0100)]
Refactor and fix IndexSet::is_ascending_ad_one_to_one

7 years agoCMake: Add TKSTEP209 to the opencascade link interface
Matthias Maier [Wed, 22 Mar 2017 02:16:54 +0000 (21:16 -0500)]
CMake: Add TKSTEP209 to the opencascade link interface

7 years agotests/opencascade: Fix two tests
Matthias Maier [Tue, 21 Mar 2017 19:34:16 +0000 (14:34 -0500)]
tests/opencascade: Fix two tests

7 years agoAdd a changes.h entry
Matthias Maier [Tue, 21 Mar 2017 19:08:39 +0000 (14:08 -0500)]
Add a changes.h entry

7 years agoCMake: Extract opencascade version in a more robust manner
Matthias Maier [Tue, 21 Mar 2017 19:00:04 +0000 (14:00 -0500)]
CMake: Extract opencascade version in a more robust manner

7 years agoOpencascade: Add an include for version 7 compatibility
Matthias Maier [Tue, 21 Mar 2017 18:53:38 +0000 (13:53 -0500)]
Opencascade: Add an include for version 7 compatibility

7 years agoOpencascade: Bugfix. Call Handle macro in a compatible fashion
Matthias Maier [Tue, 21 Mar 2017 18:52:24 +0000 (13:52 -0500)]
Opencascade: Bugfix. Call Handle macro in a compatible fashion

7 years agoOpencascade: Fix includes for version 7
Matthias Maier [Tue, 21 Mar 2017 18:51:15 +0000 (13:51 -0500)]
Opencascade: Fix includes for version 7

7 years agoCMake: Add include/opencascade to include path alternatives
Matthias Maier [Tue, 21 Mar 2017 18:12:31 +0000 (13:12 -0500)]
CMake: Add include/opencascade to include path alternatives

7 years agoMerge pull request #4086 from bangerth/improve-exception
Martin Kronbichler [Mon, 20 Mar 2017 10:46:01 +0000 (11:46 +0100)]
Merge pull request #4086 from bangerth/improve-exception

Improve the wording of an exception.

7 years agoMerge pull request #4087 from bangerth/update-reference
Daniel Arndt [Sun, 19 Mar 2017 21:39:25 +0000 (22:39 +0100)]
Merge pull request #4087 from bangerth/update-reference

Update the reference to a paper that has been accepted.

7 years agoUpdate the reference to a paper that has been accepted. 4087/head
Wolfgang Bangerth [Sun, 19 Mar 2017 21:31:18 +0000 (15:31 -0600)]
Update the reference to a paper that has been accepted.

7 years agoImprove the wording of an exception. 4086/head
Wolfgang Bangerth [Sun, 19 Mar 2017 21:28:08 +0000 (15:28 -0600)]
Improve the wording of an exception.

7 years agoRename variables in a function. 4064/head
Wolfgang Bangerth [Tue, 14 Mar 2017 13:30:44 +0000 (07:30 -0600)]
Rename variables in a function.

Match variable names at a calling site to the ones used in the called function.

7 years agoUse FE::convert_generalized_support_point_values_to_nodal_values().
Wolfgang Bangerth [Tue, 14 Mar 2017 00:46:45 +0000 (18:46 -0600)]
Use FE::convert_generalized_support_point_values_to_nodal_values().

7 years agoImplement the new FiniteElement::convert_generalized_support_point_values_to_nodal_va...
Wolfgang Bangerth [Mon, 13 Mar 2017 23:41:06 +0000 (17:41 -0600)]
Implement the new FiniteElement::convert_generalized_support_point_values_to_nodal_values interface.

This is easily done by copying the implementation of the
existing FiniteElement::interpolate() functions in the
various derived classes, removing the 'offset' argument,
and reordering+renaming the other two arguments.

7 years agoIntroduce FiniteElement::convert_generalized_support_point_values_to_nodal_values.
Wolfgang Bangerth [Fri, 24 Feb 2017 19:41:32 +0000 (12:41 -0700)]
Introduce FiniteElement::convert_generalized_support_point_values_to_nodal_values.

7 years agoMerge pull request #4082 from masterleinad/restrict_lapackfmprint
Wolfgang Bangerth [Sun, 19 Mar 2017 17:48:40 +0000 (11:48 -0600)]
Merge pull request #4082 from masterleinad/restrict_lapackfmprint

Restrict LAPACKFullMatrix::print_formatted to matrix states

7 years agoRestrict LAPACKFullMatrix::print_formatted to matrix states 4082/head
Daniel Arndt [Sat, 18 Mar 2017 16:50:32 +0000 (17:50 +0100)]
Restrict LAPACKFullMatrix::print_formatted to matrix states

7 years agoMerge pull request #4080 from tjhei/fe_field_func_parallel
Martin Kronbichler [Sun, 19 Mar 2017 09:32:40 +0000 (10:32 +0100)]
Merge pull request #4080 from tjhei/fe_field_func_parallel

Fix FEFieldFunction behavior for nonlocal cells

7 years agoMerge pull request #4083 from drwells/other-coverity-fixes
Martin Kronbichler [Sun, 19 Mar 2017 09:29:02 +0000 (10:29 +0100)]
Merge pull request #4083 from drwells/other-coverity-fixes

Other coverity fixes

7 years agoAdd new test
Martin Kronbichler [Sun, 19 Mar 2017 09:16:41 +0000 (10:16 +0100)]
Add new test

7 years agoAdd changelog
Martin Kronbichler [Sun, 19 Mar 2017 06:54:46 +0000 (07:54 +0100)]
Add changelog

7 years agoUnify interpolation from surrounding points.
Martin Kronbichler [Fri, 17 Mar 2017 14:21:31 +0000 (15:21 +0100)]
Unify interpolation from surrounding points.
Query multiple points from mapping.

7 years agoMerge pull request #4084 from drwells/to-to-fixes
Daniel Arndt [Sat, 18 Mar 2017 23:12:33 +0000 (00:12 +0100)]
Merge pull request #4084 from drwells/to-to-fixes

To to fixes

7 years agoFix a typo. 4084/head
David Wells [Sat, 18 Mar 2017 21:37:55 +0000 (17:37 -0400)]
Fix a typo.

7 years agoClarify some sentences containing 'to to'.
David Wells [Sat, 18 Mar 2017 21:36:48 +0000 (17:36 -0400)]
Clarify some sentences containing 'to to'.

7 years agoRemove an unnecessary destructor implementation. 4083/head
David Wells [Sat, 18 Mar 2017 20:41:08 +0000 (16:41 -0400)]
Remove an unnecessary destructor implementation.

The default is equal to this.

7 years agoCheck that we successfully created a directory.
David Wells [Thu, 16 Mar 2017 22:22:39 +0000 (18:22 -0400)]
Check that we successfully created a directory.

7 years agoCatch an exception by reference.
David Wells [Thu, 16 Mar 2017 22:22:27 +0000 (18:22 -0400)]
Catch an exception by reference.

7 years agoRestore std::cout flags.
David Wells [Thu, 16 Mar 2017 22:22:16 +0000 (18:22 -0400)]
Restore std::cout flags.

7 years agoInitialize variables in step constructors.
David Wells [Thu, 16 Mar 2017 22:21:14 +0000 (18:21 -0400)]
Initialize variables in step constructors.

7 years agoAdd new function to query multiple points to Manifold
Martin Kronbichler [Fri, 17 Mar 2017 14:20:39 +0000 (15:20 +0100)]
Add new function to query multiple points to Manifold

7 years agoAdjust test output
Martin Kronbichler [Fri, 3 Mar 2017 12:59:33 +0000 (13:59 +0100)]
Adjust test output

7 years agoFEFieldFunction behavior for nonlocal cells 4080/head
Timo Heister [Sat, 18 Mar 2017 17:54:19 +0000 (13:54 -0400)]
FEFieldFunction behavior for nonlocal cells

This fixes a bug in FEFieldFunction in several functions were it tries
to evaluate the function on an artificial cell and failing instead of
throwing ExcPointNotAvailableHere like it should. Fix this.


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