https://gitweb.dealii.org/ - dealii-svn.git/log

]> https://gitweb.dealii.org/ - dealii-svn.git/log

bangerth [Mon, 16 Dec 2013 20:17:46 +0000 (20:17 +0000)]

Make some progress with the documentation.

git-svn-id: https://svn.dealii.org/trunk@32031 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 16 Dec 2013 18:02:35 +0000 (18:02 +0000)]

Define the constructor of LoopControl within the class so that it is emitted as a weak symbol

git-svn-id: https://svn.dealii.org/trunk@32030 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 16 Dec 2013 13:10:34 +0000 (13:10 +0000)]

Add some documentation.

git-svn-id: https://svn.dealii.org/trunk@32026 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 16 Dec 2013 10:48:29 +0000 (10:48 +0000)]

Undo accidental check-in.

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kronbichler [Mon, 16 Dec 2013 10:47:08 +0000 (10:47 +0000)]

Fix project_boundary values for small values of function.

git-svn-id: https://svn.dealii.org/trunk@32024 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 15 Dec 2013 19:21:56 +0000 (19:21 +0000)]

CMake: Improve default config; Rename Config.sample to config.sample

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maier [Sun, 15 Dec 2013 16:51:05 +0000 (16:51 +0000)]

CMake: Hide advanced options

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maier [Sun, 15 Dec 2013 16:42:22 +0000 (16:42 +0000)]

fix typo

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maier [Sun, 15 Dec 2013 16:37:29 +0000 (16:37 +0000)]

CMake: Big compilation variables cleanup

- Be consistent in naming: All compiler / linker flag variables and
compile definition variables now start with DEAL_II_*

- For compatibility: Rename the corresponding CMAKE_* variables to
DEAL_II_* and log the fact in the configure output.

git-svn-id: https://svn.dealii.org/trunk@32019 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 15 Dec 2013 15:23:42 +0000 (15:23 +0000)]

Reenable TBB_DO_ASSERT=1 when configuring tbb

git-svn-id: https://svn.dealii.org/trunk@32018 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 15 Dec 2013 15:23:40 +0000 (15:23 +0000)]

Testsuite: Override the tbb assertion handler when TBB_DO_ASSERT is set.

The override does print the original tbb error message and after that
reenables abort_on_exception and show_stacktrace and emits a deal.II
exception.

git-svn-id: https://svn.dealii.org/trunk@32017 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sun, 15 Dec 2013 10:39:52 +0000 (10:39 +0000)]

Disable debug output.

git-svn-id: https://svn.dealii.org/trunk@32016 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 15 Dec 2013 08:37:27 +0000 (08:37 +0000)]

make tests pass for now (meshworker loop needs more work)

git-svn-id: https://svn.dealii.org/trunk@32015 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 15 Dec 2013 08:33:37 +0000 (08:33 +0000)]

remove left over comments in meshworker

git-svn-id: https://svn.dealii.org/trunk@32014 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 15 Dec 2013 08:00:17 +0000 (08:00 +0000)]

Remove reference to authors@dealii.org since that address does not exist any more.

git-svn-id: https://svn.dealii.org/trunk@32013 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sat, 14 Dec 2013 16:10:22 +0000 (16:10 +0000)]

Apply patch by Andrew Baker.

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maier [Sat, 14 Dec 2013 13:18:09 +0000 (13:18 +0000)]

Bugfix: Do not define TBB_DO_ASSERT=1.

This is an internal definition; the original build system does not define
it for building the default library, so we shouldn't do either.

git-svn-id: https://svn.dealii.org/trunk@32006 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 14 Dec 2013 11:08:01 +0000 (11:08 +0000)]

add CellID::operator<

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heister [Sat, 14 Dec 2013 11:07:06 +0000 (11:07 +0000)]

test: fix error estimator norm output

git-svn-id: https://svn.dealii.org/trunk@32004 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 14 Dec 2013 11:06:49 +0000 (11:06 +0000)]

test: fix error estimator norm output

git-svn-id: https://svn.dealii.org/trunk@32003 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 13 Dec 2013 23:52:21 +0000 (23:52 +0000)]

Testsuite: Bugfix: These tests need ZLIB

git-svn-id: https://svn.dealii.org/trunk@32001 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 13 Dec 2013 23:45:07 +0000 (23:45 +0000)]

Testsuite: Bugfix: These tests need LAPACK

git-svn-id: https://svn.dealii.org/trunk@31999 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 13 Dec 2013 23:38:38 +0000 (23:38 +0000)]

Cleanup: Use "DEAL_II_WITH_*" instead of legacy "DEAL_II_USE_*"

git-svn-id: https://svn.dealii.org/trunk@31998 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 13 Dec 2013 20:47:49 +0000 (20:47 +0000)]

Testsuite: Only use hostname output up to first period "."

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maier [Fri, 13 Dec 2013 20:42:41 +0000 (20:42 +0000)]

Remove all empty directories (git svn --rmdir next time...)

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maier [Fri, 13 Dec 2013 20:40:08 +0000 (20:40 +0000)]

Bugfix: Several fixes for bundled tbb

- Compile bundled tbb with "-D__TBB_BUILD=1" instead of "-D__TBB_BUILD"
- Remove non functional build rules for Windows/Cygwin and ia64, disable
bundled tbb support instead
- Remove unnecessary files to minimize source file footprint

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kanschat [Fri, 13 Dec 2013 15:56:34 +0000 (15:56 +0000)]

introduce LoopControl

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heister [Fri, 13 Dec 2013 15:01:13 +0000 (15:01 +0000)]

improve documentation

git-svn-id: https://svn.dealii.org/trunk@31988 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 13 Dec 2013 14:46:57 +0000 (14:46 +0000)]

timer 2 is annoying to test, fix that by not printing the timing information

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heister [Fri, 13 Dec 2013 12:45:24 +0000 (12:45 +0000)]

fix typos

git-svn-id: https://svn.dealii.org/trunk@31986 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Fri, 13 Dec 2013 01:20:51 +0000 (01:20 +0000)]

Augment documentation.

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kanschat [Thu, 12 Dec 2013 17:36:02 +0000 (17:36 +0000)]

reformat docu

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bangerth [Thu, 12 Dec 2013 17:34:45 +0000 (17:34 +0000)]

Add a comment.

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kanschat [Thu, 12 Dec 2013 15:12:34 +0000 (15:12 +0000)]

LoopControl class introduced

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bangerth [Thu, 12 Dec 2013 15:10:45 +0000 (15:10 +0000)]

Compress text some more.

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bangerth [Thu, 12 Dec 2013 15:10:15 +0000 (15:10 +0000)]

Some whitespace issues.

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kanschat [Thu, 12 Dec 2013 14:47:38 +0000 (14:47 +0000)]

change documentation

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heister [Thu, 12 Dec 2013 11:47:10 +0000 (11:47 +0000)]

add missing instantiations

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heister [Thu, 12 Dec 2013 11:37:39 +0000 (11:37 +0000)]

add missing instantiations

git-svn-id: https://svn.dealii.org/trunk@31975 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 11 Dec 2013 12:29:16 +0000 (12:29 +0000)]

Bugfix: Remove debug code in petsc_solver.cc that disables deallog output.

git-svn-id: https://svn.dealii.org/trunk@31973 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 10 Dec 2013 10:42:56 +0000 (10:42 +0000)]

Add a configure time check DEAL_II_MAC_OSX_C99_BUG

This is a small configure time check for a regression on Mac OS-X 10.9
where gcc in C++11 mode is unable to link to certain C standard library
functions defined in ctype.h and similar. In this case just disable C++11
support.

git-svn-id: https://svn.dealii.org/trunk@31970 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 10 Dec 2013 09:41:01 +0000 (09:41 +0000)]

Testsuite: Adjust output of umfpack_04 for Intel

git-svn-id: https://svn.dealii.org/trunk@31968 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 10 Dec 2013 08:13:34 +0000 (08:13 +0000)]

Adjust test cases for change in 31950: do not output number of actual nonzeros in advection matrix because they are sensitive to roundoff and are irrelevant to the test. Output more digits.

git-svn-id: https://svn.dealii.org/trunk@31966 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 10 Dec 2013 03:38:26 +0000 (03:38 +0000)]

reference new 8.0 publication

git-svn-id: https://svn.dealii.org/trunk@31965 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 9 Dec 2013 21:35:40 +0000 (21:35 +0000)]

Testsuite: Filter out branch in run_testsuite.cmake correctly

git-svn-id: https://svn.dealii.org/trunk@31963 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 9 Dec 2013 20:27:52 +0000 (20:27 +0000)]

Testsuite: Only run matrix_free/step-48 if mpi is enabled

git-svn-id: https://svn.dealii.org/trunk@31961 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 9 Dec 2013 19:04:53 +0000 (19:04 +0000)]

fix hanging nodes in step-26 and make the mesh a somewhat finer

git-svn-id: https://svn.dealii.org/trunk@31960 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 9 Dec 2013 15:29:15 +0000 (15:29 +0000)]

release step 9.

git-svn-id: https://svn.dealii.org/trunk@31957 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 9 Dec 2013 15:27:49 +0000 (15:27 +0000)]

change version number in changes.h

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heister [Mon, 9 Dec 2013 15:06:11 +0000 (15:06 +0000)]

bump version

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kanschat [Mon, 9 Dec 2013 14:48:05 +0000 (14:48 +0000)]

update output to new tangential jump operator

git-svn-id: https://svn.dealii.org/trunk@31951 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 9 Dec 2013 11:35:24 +0000 (11:35 +0000)]

Need to disable CellSimilarity when the number of threads is greater than one because otherwise we get different mapping data (on the order of roundoff) on cells that are translations of each other. When using WorkStream, this might result in different matrices that are eventually generated

git-svn-id: https://svn.dealii.org/trunk@31950 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 8 Dec 2013 17:48:48 +0000 (17:48 +0000)]

Documentation: Remove obsolete header entry to deal.css in mod_header.pl

git-svn-id: https://svn.dealii.org/trunk@31949 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 8 Dec 2013 17:14:12 +0000 (17:14 +0000)]

Revert the last two commits because RULE_LAUNCH_COMPILE is not supported by
the Ninja Generator...

git-svn-id: https://svn.dealii.org/trunk@31948 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 8 Dec 2013 17:14:09 +0000 (17:14 +0000)]

fix link

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heister [Sun, 8 Dec 2013 17:12:55 +0000 (17:12 +0000)]

fix links

git-svn-id: https://svn.dealii.org/trunk@31946 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 8 Dec 2013 17:06:04 +0000 (17:06 +0000)]

Add a couple more words.

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bangerth [Sun, 8 Dec 2013 17:05:48 +0000 (17:05 +0000)]

Separate initials as in most places.

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heister [Sun, 8 Dec 2013 17:00:17 +0000 (17:00 +0000)]

fix comment style in css

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heister [Sun, 8 Dec 2013 16:08:20 +0000 (16:08 +0000)]

remove leftover code in quicktest cmake file

git-svn-id: https://svn.dealii.org/trunk@31942 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 8 Dec 2013 16:01:48 +0000 (16:01 +0000)]

Quicktests: Remove target-OK prior to compilation

Remove target-OK prior to compilation of target with the help of
RULE_LAUNCH_COMPILE. This is a cleaner solution because the removal is only
triggered if target is actually (re)built.

Additionally, reintroduce the ADD_CUSTOM_COMMAND and ADD_CUSTOM_TARGET
splitting so that also quicktests only rerun if they actually have to...

git-svn-id: https://svn.dealii.org/trunk@31941 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 8 Dec 2013 15:49:12 +0000 (15:49 +0000)]

add documentation

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heister [Sun, 8 Dec 2013 15:28:38 +0000 (15:28 +0000)]

fix typo

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heister [Sun, 8 Dec 2013 15:27:58 +0000 (15:27 +0000)]

fix dead link

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maier [Sun, 8 Dec 2013 14:09:48 +0000 (14:09 +0000)]

fix typo

git-svn-id: https://svn.dealii.org/trunk@31937 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 8 Dec 2013 09:13:45 +0000 (09:13 +0000)]

Testsuite: Only run fe_q_dg0 if UMFPACK is available

git-svn-id: https://svn.dealii.org/trunk@31936 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 8 Dec 2013 02:49:30 +0000 (02:49 +0000)]

quicktests: revert part of r31930

git-svn-id: https://svn.dealii.org/trunk@31935 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 8 Dec 2013 02:36:05 +0000 (02:36 +0000)]

update changes and news for release

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heister [Sun, 8 Dec 2013 02:30:25 +0000 (02:30 +0000)]

update authors list

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heister [Sun, 8 Dec 2013 02:15:54 +0000 (02:15 +0000)]

reindent using astyle

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heister [Sun, 8 Dec 2013 01:54:59 +0000 (01:54 +0000)]

fix typo

git-svn-id: https://svn.dealii.org/trunk@31931 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 8 Dec 2013 01:50:50 +0000 (01:50 +0000)]

Quicktests: Fix and cleanup the hack in quicktests :-]

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maier [Sun, 8 Dec 2013 00:54:11 +0000 (00:54 +0000)]

Cosmetic change: Fix $Id$ in two places

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heister [Sun, 8 Dec 2013 00:48:40 +0000 (00:48 +0000)]

quicktests: force the deletion of old -OK files

git-svn-id: https://svn.dealii.org/trunk@31928 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 8 Dec 2013 00:08:59 +0000 (00:08 +0000)]

better output for 'make test' and provide some helpful error messages

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maier [Sat, 7 Dec 2013 22:09:42 +0000 (22:09 +0000)]

*sigh*

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maier [Sat, 7 Dec 2013 22:06:37 +0000 (22:06 +0000)]

Fix typo introduced in previous commit *blush*

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maier [Sat, 7 Dec 2013 22:04:33 +0000 (22:04 +0000)]

Forgot one...

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maier [Sat, 7 Dec 2013 22:03:20 +0000 (22:03 +0000)]

Testsuite: Bugfix: Only run thread_local_storage tests if deal.II is configured with thread support

git-svn-id: https://svn.dealii.org/trunk@31923 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 7 Dec 2013 21:50:41 +0000 (21:50 +0000)]

Testsuite: Bugfix: Silence a warning introduced in r31919

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heister [Sat, 7 Dec 2013 20:55:04 +0000 (20:55 +0000)]

tutorial page fixes

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heister [Sat, 7 Dec 2013 20:53:38 +0000 (20:53 +0000)]

add publications

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maier [Sat, 7 Dec 2013 19:36:22 +0000 (19:36 +0000)]

Testsuite: Bugfix: Use the correct mpirun executable as found by FindMPI.cmake

git-svn-id: https://svn.dealii.org/trunk@31919 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 7 Dec 2013 17:39:54 +0000 (17:39 +0000)]

Convert a couple of places where we intended 'unsigned int' but now had 'size_type'.

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bangerth [Sat, 7 Dec 2013 16:30:01 +0000 (16:30 +0000)]

A couple of fixes to make things compile again in 64-bit mode after the change to full_matrix.h a couple of days ago.

git-svn-id: https://svn.dealii.org/trunk@31917 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 7 Dec 2013 03:02:14 +0000 (03:02 +0000)]

CMake: Several bugfixes in FindTRILINOS.cmake

- Use again the FIND_PACKAGE mechanism that has the right search order for
project configurations

- Print error condition in configure phase so that one has a clue what is
going wrong...

git-svn-id: https://svn.dealii.org/trunk@31916 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 6 Dec 2013 18:15:52 +0000 (18:15 +0000)]

Testsuite: Provide alternative output for q_dg0_projection_01 with icc

git-svn-id: https://svn.dealii.org/trunk@31914 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 6 Dec 2013 16:52:31 +0000 (16:52 +0000)]

Testsuite: Provide alternative output for icc

The tests in question test whether it is possible to find a vertex lying
exactly on an edge or line, respectively. Unfortunately this is not stable
under more aggressive optimization.

git-svn-id: https://svn.dealii.org/trunk@31913 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 6 Dec 2013 16:11:49 +0000 (16:11 +0000)]

Revert "Testsuite: Reenable compiler version injection on non Linux platforms"

git-svn-id: https://svn.dealii.org/trunk@31912 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 6 Dec 2013 15:29:19 +0000 (15:29 +0000)]

revert last commit

git-svn-id: https://svn.dealii.org/trunk@31911 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 6 Dec 2013 14:04:44 +0000 (14:04 +0000)]

Remove 'official' Windows support from the readme.

git-svn-id: https://svn.dealii.org/trunk@31910 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 6 Dec 2013 13:58:10 +0000 (13:58 +0000)]

Testsuite: Reenable compiler version injection on non Linux platforms

git-svn-id: https://svn.dealii.org/trunk@31909 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 6 Dec 2013 13:37:03 +0000 (13:37 +0000)]

Documentation: Update some documentation

git-svn-id: https://svn.dealii.org/trunk@31908 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 6 Dec 2013 09:14:28 +0000 (09:14 +0000)]

Fix latex formula

git-svn-id: https://svn.dealii.org/trunk@31907 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 6 Dec 2013 04:12:23 +0000 (04:12 +0000)]

Add a couple of previously missing specializations.

git-svn-id: https://svn.dealii.org/trunk@31906 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 6 Dec 2013 04:10:38 +0000 (04:10 +0000)]

In the conversion to 64-bit indices, a lot of classes acquired a local typedef 'size_type'. In some cases, it was aliased to types::global_dof_index, but this may have been a mistake. One such example is FullMatrix, which definitely doesn't need 64-bit indices. Revert this and go back to 'unsigned int' for the local size_type type.

git-svn-id: https://svn.dealii.org/trunk@31905 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 6 Dec 2013 01:34:01 +0000 (01:34 +0000)]

Documentation: Some more cleanup

git-svn-id: https://svn.dealii.org/trunk@31904 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 6 Dec 2013 01:13:08 +0000 (01:13 +0000)]

Documentation: Cleanup, and remove obsolete dot invocation

git-svn-id: https://svn.dealii.org/trunk@31903 0785d39b-7218-0410-832d-ea1e28bc413d

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daniel.arndt [Thu, 5 Dec 2013 12:30:16 +0000 (12:30 +0000)]

Adjust the tests using collect_periodic_faces to the new signature in r31900

git-svn-id: https://svn.dealii.org/trunk@31901 0785d39b-7218-0410-832d-ea1e28bc413d

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daniel.arndt [Thu, 5 Dec 2013 12:20:32 +0000 (12:20 +0000)]

Changed the signature of collect_periodic_faces to return the result via a reference and not as return value

git-svn-id: https://svn.dealii.org/trunk@31900 0785d39b-7218-0410-832d-ea1e28bc413d

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