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dealii.git
5 years agoMerge pull request #8103 from jppelteret/sd-template_params_01
Martin Kronbichler [Sun, 12 May 2019 06:02:40 +0000 (08:02 +0200)]
Merge pull request #8103 from jppelteret/sd-template_params_01

SD: Better document and homogenise naming of template parameters

5 years agoMerge pull request #8105 from masterleinad/modernize_step-55
Martin Kronbichler [Sun, 12 May 2019 06:01:13 +0000 (08:01 +0200)]
Merge pull request #8105 from masterleinad/modernize_step-55

Modernize/Fix step-55

5 years agoMerge pull request #8095 from jppelteret/modernise_step_44
Martin Kronbichler [Sun, 12 May 2019 06:00:54 +0000 (08:00 +0200)]
Merge pull request #8095 from jppelteret/modernise_step_44

Modernise step-44

5 years agoMerge pull request #8097 from masterleinad/modernize_step_42
Martin Kronbichler [Sun, 12 May 2019 06:00:36 +0000 (08:00 +0200)]
Merge pull request #8097 from masterleinad/modernize_step_42

Modernize step-42

5 years agoMerge pull request #8100 from drwells/update-step-34-38-41
Martin Kronbichler [Sun, 12 May 2019 06:00:15 +0000 (08:00 +0200)]
Merge pull request #8100 from drwells/update-step-34-38-41

Update step 34 38 41

5 years agoMerge pull request #8094 from masterleinad/modernize_step_46
Martin Kronbichler [Sun, 12 May 2019 05:59:57 +0000 (07:59 +0200)]
Merge pull request #8094 from masterleinad/modernize_step_46

Modernize step-46

5 years agoMerge pull request #8106 from masterleinad/modernize_step-33
Martin Kronbichler [Sun, 12 May 2019 05:52:07 +0000 (07:52 +0200)]
Merge pull request #8106 from masterleinad/modernize_step-33

Modernize step-33

5 years agoMerge pull request #8108 from masterleinad/restrict_meshworker_tests
Martin Kronbichler [Sun, 12 May 2019 05:36:01 +0000 (07:36 +0200)]
Merge pull request #8108 from masterleinad/restrict_meshworker_tests

Restrict MeshWorker tests

5 years agoMerge pull request #8099 from masterleinad/modernize_step-26
Martin Kronbichler [Sun, 12 May 2019 05:29:29 +0000 (07:29 +0200)]
Merge pull request #8099 from masterleinad/modernize_step-26

Modernize step-26

5 years agoRestrict meshworker tests 8108/head
Daniel Arndt [Sun, 12 May 2019 05:17:38 +0000 (07:17 +0200)]
Restrict meshworker tests

5 years agoModernize step-33 8106/head
Daniel Arndt [Sun, 12 May 2019 03:03:39 +0000 (05:03 +0200)]
Modernize step-33

5 years agostep-41: C++ modernization. 8100/head
David Wells [Sat, 11 May 2019 18:14:53 +0000 (14:14 -0400)]
step-41: C++ modernization.

1. Avoid including <list> (we don't use it)
2. Inline function definitions
3. Use ranged-for loops

5 years agostep-38: update results.
David Wells [Sat, 11 May 2019 18:09:41 +0000 (14:09 -0400)]
step-38: update results.

5 years agostep-38: delete trailing whitespace.
David Wells [Sat, 11 May 2019 18:09:23 +0000 (14:09 -0400)]
step-38: delete trailing whitespace.

5 years agostep-38: C++ modernization.
David Wells [Sat, 11 May 2019 18:06:49 +0000 (14:06 -0400)]
step-38: C++ modernization.

1. Fix the order of the headers.
2. Fix some doxygen links and add '()' to functions.
3. Use ranged-for loops.

5 years agostep-34: update output.
David Wells [Sat, 11 May 2019 18:05:29 +0000 (14:05 -0400)]
step-34: update output.

5 years agostep-34: C++ modernization.
David Wells [Sat, 11 May 2019 17:19:20 +0000 (13:19 -0400)]
step-34: C++ modernization.

1. Use dof_handler instead of dh to match the other tutorial programs.
2. Use std::to_string
3. Avoid using deprecated features (e.g., update_cell_normal_vectors)
4. Ranged-for loops
5. Remove a circular builds-on dependency with step-38

5 years agoMerge pull request #8096 from masterleinad/modernize_step_43
Daniel Arndt [Sun, 12 May 2019 02:36:24 +0000 (22:36 -0400)]
Merge pull request #8096 from masterleinad/modernize_step_43

Modernize step 43

5 years agoModernize/Fix step-55 8105/head
Daniel Arndt [Sun, 12 May 2019 02:02:51 +0000 (22:02 -0400)]
Modernize/Fix step-55

5 years agoMerge pull request #8104 from jppelteret/fix_changelog_01
David Wells [Sat, 11 May 2019 22:55:35 +0000 (18:55 -0400)]
Merge pull request #8104 from jppelteret/fix_changelog_01

Fix a changelog entry

5 years agoMerge pull request #8093 from masterleinad/fix_warnings_step_62
Jean-Paul Pelteret [Sat, 11 May 2019 22:52:12 +0000 (00:52 +0200)]
Merge pull request #8093 from masterleinad/fix_warnings_step_62

Fix warnings in step-62

5 years agoFix a changelog entry 8104/head
Jean-Paul Pelteret [Sat, 11 May 2019 21:36:23 +0000 (23:36 +0200)]
Fix a changelog entry

5 years agoMerge pull request #8090 from kronbichler/step-31-fix
Jean-Paul Pelteret [Sat, 11 May 2019 21:07:41 +0000 (23:07 +0200)]
Merge pull request #8090 from kronbichler/step-31-fix

step-31: Fix compilation with clang

5 years agoDocument some template parameters of SD functions for tensors 8103/head
Jean-Paul Pelteret [Sat, 11 May 2019 20:18:35 +0000 (22:18 +0200)]
Document some template parameters of SD functions for tensors

5 years agoDocument some template parameters of SD functions for scalars
Jean-Paul Pelteret [Sat, 11 May 2019 20:18:20 +0000 (22:18 +0200)]
Document some template parameters of SD functions for scalars

5 years agoAdd ExpressionType template parameter to tensor make_substitution_map()
Jean-Paul Pelteret [Sat, 11 May 2019 19:54:33 +0000 (21:54 +0200)]
Add ExpressionType template parameter to tensor make_substitution_map()

5 years agoAdd ExpressionType template parameter to tensor add_to_substitution_map()
Jean-Paul Pelteret [Sat, 11 May 2019 19:54:20 +0000 (21:54 +0200)]
Add ExpressionType template parameter to tensor add_to_substitution_map()

5 years agoUse correct template parameter name in set_value_in_symbol_map()
Jean-Paul Pelteret [Sat, 11 May 2019 19:53:04 +0000 (21:53 +0200)]
Use correct template parameter name in set_value_in_symbol_map()

5 years agoUpdate examples/step-46/step-46.cc 8094/head
Daniel Arndt [Sat, 11 May 2019 19:50:52 +0000 (15:50 -0400)]
Update examples/step-46/step-46.cc

Co-Authored-By: David Wells <drwells@email.unc.edu>
5 years agoHomogenise template parameter names in make_substitution_map() and
Jean-Paul Pelteret [Sat, 11 May 2019 19:33:53 +0000 (21:33 +0200)]
Homogenise template parameter names in make_substitution_map() and
add_to_substitution_map()

5 years agoRemove a default template parameter
Jean-Paul Pelteret [Sat, 11 May 2019 19:23:34 +0000 (21:23 +0200)]
Remove a default template parameter

5 years agoAdd some tutorial keywords for step-44 8095/head
Jean-Paul Pelteret [Sat, 11 May 2019 19:13:13 +0000 (21:13 +0200)]
Add some tutorial keywords for step-44

5 years agoWrite VTU output with higher order elements
Jean-Paul Pelteret [Sat, 11 May 2019 17:32:05 +0000 (19:32 +0200)]
Write VTU output with higher order elements

5 years agoModernize step-26 8099/head
Daniel Arndt [Sat, 11 May 2019 18:58:29 +0000 (14:58 -0400)]
Modernize step-26

5 years agoMerge pull request #8088 from drwells/update-step-21
Jean-Paul Pelteret [Sat, 11 May 2019 18:59:06 +0000 (20:59 +0200)]
Merge pull request #8088 from drwells/update-step-21

Modernize step-21.

5 years agostep-34: update manifold description.
David Wells [Sat, 11 May 2019 17:18:51 +0000 (13:18 -0400)]
step-34: update manifold description.

We clone manifolds now.

5 years agoMerge pull request #8082 from rezarastak/SymmetricTensor-fix
Denis Davydov [Sat, 11 May 2019 18:09:58 +0000 (20:09 +0200)]
Merge pull request #8082 from rezarastak/SymmetricTensor-fix

duplicated documentation in SymmetricTensor removed

5 years agoUse standard names for dof_handler, fe_values and fe_face_values
Jean-Paul Pelteret [Sat, 11 May 2019 17:26:41 +0000 (19:26 +0200)]
Use standard names for dof_handler, fe_values and fe_face_values

5 years agoUse range-based for loops 8097/head
Daniel Arndt [Sat, 11 May 2019 17:35:17 +0000 (13:35 -0400)]
Use range-based for loops

5 years agoUse preincrement consistently
Daniel Arndt [Sat, 11 May 2019 17:34:53 +0000 (13:34 -0400)]
Use preincrement consistently

5 years agoAvoid redefining vector_value
Daniel Arndt [Sat, 11 May 2019 17:32:43 +0000 (13:32 -0400)]
Avoid redefining vector_value

5 years agoUpdate indentation of assembly operations
Jean-Paul Pelteret [Sat, 11 May 2019 17:22:15 +0000 (19:22 +0200)]
Update indentation of assembly operations

5 years agoUse range-based for loops 8096/head
Daniel Arndt [Sat, 11 May 2019 16:32:03 +0000 (12:32 -0400)]
Use range-based for loops

5 years agoUse AssertDimension
Daniel Arndt [Sat, 11 May 2019 16:31:42 +0000 (12:31 -0400)]
Use AssertDimension

5 years agoAvoid static function
Daniel Arndt [Sat, 11 May 2019 16:31:20 +0000 (12:31 -0400)]
Avoid static function

5 years agoUse iterator ranges for cell loops
Jean-Paul Pelteret [Sat, 11 May 2019 16:51:34 +0000 (18:51 +0200)]
Use iterator ranges for cell loops

5 years agoUse override
Daniel Arndt [Sat, 11 May 2019 16:30:52 +0000 (12:30 -0400)]
Use override

5 years agoUse ZeroFuntion instead of PressureRightHandSide
Daniel Arndt [Sat, 11 May 2019 16:30:25 +0000 (12:30 -0400)]
Use ZeroFuntion instead of PressureRightHandSide

5 years agoUse LinearOperators in linear solver by default
Jean-Paul Pelteret [Sat, 11 May 2019 16:18:20 +0000 (18:18 +0200)]
Use LinearOperators in linear solver by default

5 years agoImplement const version of begin() and end() function for IteratorRange
Jean-Paul Pelteret [Sat, 11 May 2019 16:17:54 +0000 (18:17 +0200)]
Implement const version of begin() and end() function for IteratorRange

Allows Workstream::run() to be called with constant functions as
arguments.

5 years agoUse range-based for loops
Daniel Arndt [Sat, 11 May 2019 15:38:28 +0000 (11:38 -0400)]
Use range-based for loops

5 years agoRemove RightHandSide
Daniel Arndt [Sat, 11 May 2019 15:38:04 +0000 (11:38 -0400)]
Remove RightHandSide

5 years agoMerge pull request #8008 from jppelteret/sd-map_utilities_04
Jean-Paul Pelteret [Sat, 11 May 2019 15:37:04 +0000 (17:37 +0200)]
Merge pull request #8008 from jppelteret/sd-map_utilities_04

SD scalar and tensor operations: Make, add to, and set value in symbol map

5 years agoFix warnings in step-62 8093/head
Daniel Arndt [Sat, 11 May 2019 15:07:20 +0000 (11:07 -0400)]
Fix warnings in step-62

5 years agoMerge pull request #7752 from GivAlz/GuessOwnerTree
Martin Kronbichler [Sat, 11 May 2019 13:56:35 +0000 (15:56 +0200)]
Merge pull request #7752 from GivAlz/GuessOwnerTree

New function GridTools::guess_point_owner from covering tree

5 years agoMerge pull request #8002 from luca-heltai/mapping-bbox
Wolfgang Bangerth [Sat, 11 May 2019 13:42:52 +0000 (07:42 -0600)]
Merge pull request #8002 from luca-heltai/mapping-bbox

Mapping::get_bounding_box()

5 years agoMerge pull request #8009 from jppelteret/sd-map_utilities_05
Jean-Paul Pelteret [Sat, 11 May 2019 13:14:55 +0000 (15:14 +0200)]
Merge pull request #8009 from jppelteret/sd-map_utilities_05

SD map operations:  Add function to resolve explicit and cyclic dependencies

5 years agostep-31: Fix compilation with clang 8090/head
Martin Kronbichler [Sat, 11 May 2019 10:04:24 +0000 (12:04 +0200)]
step-31: Fix compilation with clang

5 years agoMerge pull request #7638 from jppelteret/ad_numbertype_none
Jean-Paul Pelteret [Sat, 11 May 2019 11:23:19 +0000 (13:23 +0200)]
Merge pull request #7638 from jppelteret/ad_numbertype_none

Add AD::NumberType::none

5 years agoMerge pull request #8065 from kronbichler/dof_renumbering_cleanup
Martin Kronbichler [Sat, 11 May 2019 10:25:55 +0000 (12:25 +0200)]
Merge pull request #8065 from kronbichler/dof_renumbering_cleanup

DoFHandlerPolicy::renumber_dofs: skip unnecessary index set computation

5 years agoMerge pull request #8081 from drwells/deprecate-nanoflann
Luca Heltai [Sat, 11 May 2019 10:10:07 +0000 (12:10 +0200)]
Merge pull request #8081 from drwells/deprecate-nanoflann

Deprecate nanoflann.

5 years agoMerge pull request #8087 from drwells/update-relative-to-step-20
Martin Kronbichler [Sat, 11 May 2019 08:55:55 +0000 (10:55 +0200)]
Merge pull request #8087 from drwells/update-relative-to-step-20

Update documentation relative to other changes.

5 years agoMerge pull request #8071 from drwells/fix-array-initializer
Martin Kronbichler [Sat, 11 May 2019 08:35:48 +0000 (10:35 +0200)]
Merge pull request #8071 from drwells/fix-array-initializer

Fix an array initialization.

5 years agoMerge pull request #8074 from kronbichler/deprecate_feeval_fill_JxW_values
Martin Kronbichler [Sat, 11 May 2019 08:33:24 +0000 (10:33 +0200)]
Merge pull request #8074 from kronbichler/deprecate_feeval_fill_JxW_values

Deprecate FEEvaluation::fill_JxW_values

5 years agoModernize step-21. 8088/head
David Wells [Sat, 11 May 2019 03:17:28 +0000 (23:17 -0400)]
Modernize step-21.

1. Ranged for-loops
2. Improve discussion relative to step-20
3. Use DGQ, not DQ, for standard discontinuous elements
4. inline function definitions

5 years agoUpdate documentation relative to other changes. 8087/head
David Wells [Sat, 11 May 2019 02:48:52 +0000 (22:48 -0400)]
Update documentation relative to other changes.

In f21656e3fd2 we switched to using LinearOperator in step-20, which
made some other references to that program no longer make sense. This
commit updates said references.

5 years agoMerge pull request #7978 from tamiko/refactor_cuda_aware_mpi
Daniel Arndt [Sat, 11 May 2019 01:39:00 +0000 (21:39 -0400)]
Merge pull request #7978 from tamiko/refactor_cuda_aware_mpi

Refactor configuration option into DEAL_II_MPI_WITH_CUDA_SUPPORT

5 years agoMerge pull request #7628 from dangars/canonical_documentation
Wolfgang Bangerth [Fri, 10 May 2019 23:20:29 +0000 (17:20 -0600)]
Merge pull request #7628 from dangars/canonical_documentation

Use canonical webpages

5 years agoImprove function documentation and add some extra template parameters 8008/head
Jean-Paul Pelteret [Fri, 10 May 2019 23:16:13 +0000 (01:16 +0200)]
Improve function documentation and add some extra template parameters

5 years agoMake consistent the use of some doxygen keywords
Jean-Paul Pelteret [Fri, 10 May 2019 21:41:31 +0000 (23:41 +0200)]
Make consistent the use of some doxygen keywords

5 years agoduplicated documentation removed. unnecessary implementation of function specializati... 8082/head
Reza Rastak [Fri, 10 May 2019 21:37:14 +0000 (14:37 -0700)]
duplicated documentation removed. unnecessary implementation of function specialization removed

5 years agoBetter document some template parameters
Jean-Paul Pelteret [Fri, 10 May 2019 21:29:57 +0000 (23:29 +0200)]
Better document some template parameters

5 years agoMake consistent the use of some doxygen keywords
Jean-Paul Pelteret [Fri, 10 May 2019 21:29:47 +0000 (23:29 +0200)]
Make consistent the use of some doxygen keywords

5 years agoBetter document some template parameters 8009/head
Jean-Paul Pelteret [Fri, 10 May 2019 21:29:57 +0000 (23:29 +0200)]
Better document some template parameters

5 years agoMake consistent the use of some doxygen keywords
Jean-Paul Pelteret [Fri, 10 May 2019 21:29:47 +0000 (23:29 +0200)]
Make consistent the use of some doxygen keywords

5 years agoAdd function to resolve explicit and cyclic dependencies in sub. maps
Jean-Paul Pelteret [Sun, 5 May 2019 15:42:11 +0000 (17:42 +0200)]
Add function to resolve explicit and cyclic dependencies in sub. maps

5 years agoMerge pull request #8069 from drwells/modernize-step-32
Martin Kronbichler [Fri, 10 May 2019 20:59:56 +0000 (22:59 +0200)]
Merge pull request #8069 from drwells/modernize-step-32

Modernize step 32

5 years agoAdd a changelog entry 7638/head
Jean-Paul Pelteret [Fri, 10 May 2019 20:46:30 +0000 (22:46 +0200)]
Add a changelog entry

5 years agoMerge pull request #7933 from marcfehling/weights-artificial
Martin Kronbichler [Fri, 10 May 2019 20:42:20 +0000 (22:42 +0200)]
Merge pull request #7933 from marcfehling/weights-artificial

Minor cleanup of hp::DoFHandler.

5 years agoUpdate existing AD number traits tests
Jean-Paul Pelteret [Fri, 10 May 2019 20:36:23 +0000 (22:36 +0200)]
Update existing AD number traits tests

This deals with the increment in the ADNumberTypes enumeration

5 years agoAdd AD number traits test for ADNumberType::none (floating point types)
Jean-Paul Pelteret [Fri, 10 May 2019 20:35:49 +0000 (22:35 +0200)]
Add AD number traits test for ADNumberType::none (floating point types)

5 years agoInstantiate ADHelpers classes with AD::NumberTypes::none.
Jean-Paul Pelteret [Fri, 10 May 2019 20:35:00 +0000 (22:35 +0200)]
Instantiate ADHelpers classes with AD::NumberTypes::none.

The creation of a concrete instance of this class is, however, disabled.
This is because the class will not be able to do anything useful.

5 years agoInstantiate ADDrivers classes with AD::NumberTypes::none.
Jean-Paul Pelteret [Fri, 10 May 2019 20:33:16 +0000 (22:33 +0200)]
Instantiate ADDrivers classes with AD::NumberTypes::none.

5 years agoChange std::is_arithmetic to std::is_floating_point in ad_number_traits.h
Jean-Paul Pelteret [Fri, 10 May 2019 20:30:18 +0000 (22:30 +0200)]
Change std::is_arithmetic to std::is_floating_point in ad_number_traits.h

5 years agoAdd dummy AD::NumberTypes::none for floating point number types
Jean-Paul Pelteret [Fri, 10 May 2019 20:29:34 +0000 (22:29 +0200)]
Add dummy AD::NumberTypes::none for floating point number types

These number types are scalar arithmetic types, that hold no
derivatives. They are implemented primarily to facilitate the use of
template meta-programming techniques to switch between different AD
types. This covers the case when the user does not want an AD type at
all, but rather a primitive type.

5 years agoAvoid a warning about an unused variable
Jean-Paul Pelteret [Fri, 10 May 2019 20:31:40 +0000 (22:31 +0200)]
Avoid a warning about an unused variable

5 years agoFix two tests missed in #8018.
Jean-Paul Pelteret [Fri, 10 May 2019 20:35:31 +0000 (22:35 +0200)]
Fix two tests missed in #8018.

5 years agoMerge pull request #8078 from sophy1029/step-61
Martin Kronbichler [Fri, 10 May 2019 19:31:22 +0000 (21:31 +0200)]
Merge pull request #8078 from sophy1029/step-61

step-61 announcement.

5 years agoMerge pull request #7743 from GivAlz/OptimizeCptLoc
Martin Kronbichler [Fri, 10 May 2019 19:27:06 +0000 (21:27 +0200)]
Merge pull request #7743 from GivAlz/OptimizeCptLoc

Using rtrees in GridTools::compute_point_locations_try_all for cell search

5 years agoMinor update to a changelog entry. 8078/head
Wolfgang Bangerth [Fri, 10 May 2019 18:52:50 +0000 (12:52 -0600)]
Minor update to a changelog entry.

5 years agoMerge pull request #8034 from drwells/fix-move-warnings
Martin Kronbichler [Fri, 10 May 2019 18:15:48 +0000 (20:15 +0200)]
Merge pull request #8034 from drwells/fix-move-warnings

Remove some unnecessary std::moves.

5 years agoMerge pull request #8063 from masterleinad/fix_clang_4_warnings
Martin Kronbichler [Fri, 10 May 2019 18:05:57 +0000 (20:05 +0200)]
Merge pull request #8063 from masterleinad/fix_clang_4_warnings

Fix clang-4 warnings

5 years agoDeprecate nanoflann. 8081/head
David Wells [Fri, 10 May 2019 17:22:49 +0000 (13:22 -0400)]
Deprecate nanoflann.

We have reached a consensus that boost's rtree is superior.

5 years agoMerge pull request #8073 from marcfehling/fe-changelog
Luca Heltai [Fri, 10 May 2019 16:56:19 +0000 (18:56 +0200)]
Merge pull request #8073 from marcfehling/fe-changelog

Adjusted changelog for #7899.

5 years agoDeprecate FEEvaluation::fill_JxW_values 8074/head
Martin Kronbichler [Fri, 10 May 2019 16:52:28 +0000 (18:52 +0200)]
Deprecate FEEvaluation::fill_JxW_values

5 years agoAdjusted changelog for #7899. 8073/head
Marc Fehling [Fri, 10 May 2019 16:39:56 +0000 (18:39 +0200)]
Adjusted changelog for #7899.

5 years agoAdd constant get_boundary_points(). 8002/head
Luca Heltai [Fri, 10 May 2019 16:06:11 +0000 (18:06 +0200)]
Add constant get_boundary_points().

5 years agoUse the new constructor for Mapping::get_bounding_box()
Luca Heltai [Fri, 10 May 2019 08:56:50 +0000 (10:56 +0200)]
Use the new constructor for Mapping::get_bounding_box()

5 years agoDocumentation fixes.
Luca Heltai [Fri, 10 May 2019 08:56:19 +0000 (10:56 +0200)]
Documentation fixes.

5 years agoAdd the possibility to build bounding boxes with containers of points.
Luca Heltai [Fri, 10 May 2019 08:55:58 +0000 (10:55 +0200)]
Add the possibility to build bounding boxes with containers of points.


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