https://gitweb.dealii.org/

Timo Heister [Thu, 17 Jul 2014 15:20:00 +0000 (15:20 +0000)]

fix last commit

git-svn-id: https://svn.dealii.org/trunk@33191 0785d39b-7218-0410-832d-ea1e28bc413d

Timo Heister [Thu, 17 Jul 2014 15:18:12 +0000 (15:18 +0000)]

testsuite: also log the two filenames in diff in one line for scripting reasons

git-svn-id: https://svn.dealii.org/trunk@33190 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 17 Jul 2014 13:47:13 +0000 (13:47 +0000)]

adjust test output

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Luca Heltai [Thu, 17 Jul 2014 12:19:04 +0000 (12:19 +0000)]

Fixed another call to KSPSetOperators

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Matthias Maier [Thu, 17 Jul 2014 07:34:24 +0000 (07:34 +0000)]

CMake: Bugfix: Generate options for test subprojects as a list

git-svn-id: https://svn.dealii.org/trunk@33187 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Wed, 16 Jul 2014 21:44:43 +0000 (21:44 +0000)]

CMake: The obligatory bugfix...

git-svn-id: https://svn.dealii.org/trunk@33186 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Wed, 16 Jul 2014 21:11:20 +0000 (21:11 +0000)]

CMake: Port to version 3.0.0, part 3.

Quick fix for new lexer rules (tm)

git-svn-id: https://svn.dealii.org/trunk@33185 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Wed, 16 Jul 2014 21:11:16 +0000 (21:11 +0000)]

CMake: Port to version 3.0.0, part 2.

This commit removes the testsuite subproject regeneration callback and
cleans up the relevant code

git-svn-id: https://svn.dealii.org/trunk@33184 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 16 Jul 2014 11:26:40 +0000 (11:26 +0000)]

Add a forgotten entry.

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Wolfgang Bangerth [Tue, 15 Jul 2014 21:53:17 +0000 (21:53 +0000)]

Update it a bit.

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Bruno Turcksin [Tue, 15 Jul 2014 15:52:04 +0000 (15:52 +0000)]

Improve documentation of step-52.

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Wolfgang Bangerth [Tue, 15 Jul 2014 02:24:32 +0000 (02:24 +0000)]

Address issue #228 (https://code.google.com/p/dealii/issues/detail?id=228): Teach GridReordering::reorder_cells() to use the vertex numbering that we have used every since deal.II 5.2. Remove the code for this from grid_generator.cc and instead call reorder_cells() from there with the flag set.

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Wolfgang Bangerth [Tue, 15 Jul 2014 01:35:06 +0000 (01:35 +0000)]

Copy Luca's example from tests/manifold/manifold_06.cc.

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Wolfgang Bangerth [Mon, 14 Jul 2014 23:04:24 +0000 (23:04 +0000)]

Do not write copies of the output to /tmp.

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Wolfgang Bangerth [Mon, 14 Jul 2014 22:59:39 +0000 (22:59 +0000)]

Reindent files according to our usual style.

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Wolfgang Bangerth [Mon, 14 Jul 2014 22:55:53 +0000 (22:55 +0000)]

Tests for the previous commit.

git-svn-id: https://svn.dealii.org/trunk@33175 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 14 Jul 2014 22:55:47 +0000 (22:55 +0000)]

Also provide GridOut::write_vtu().

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Wolfgang Bangerth [Mon, 14 Jul 2014 22:20:47 +0000 (22:20 +0000)]

Tests for the previous commit.

git-svn-id: https://svn.dealii.org/trunk@33173 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 14 Jul 2014 22:20:35 +0000 (22:20 +0000)]

Provide a function GridOut::write_vtk().

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Wolfgang Bangerth [Mon, 14 Jul 2014 22:08:41 +0000 (22:08 +0000)]

Clarify a piece of documentation that was pretty much unintelligible before.

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Wolfgang Bangerth [Mon, 14 Jul 2014 21:24:59 +0000 (21:24 +0000)]

The GridOut::Svg class does not implement functions to declare and parse parameters. Remove the declarations (currently commented out anyway) to avoid confusion.

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Luca Heltai [Mon, 14 Jul 2014 15:54:06 +0000 (15:54 +0000)]

Added set_manifold with two arguments.

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Wolfgang Bangerth [Mon, 14 Jul 2014 14:38:50 +0000 (14:38 +0000)]

Adjust type.

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Wolfgang Bangerth [Mon, 14 Jul 2014 14:37:56 +0000 (14:37 +0000)]

Start a new tutorial on geometry.

git-svn-id: https://svn.dealii.org/trunk@33165 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 14 Jul 2014 11:08:08 +0000 (11:08 +0000)]

Move entry to the right place.

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Luca Heltai [Mon, 14 Jul 2014 10:25:31 +0000 (10:25 +0000)]

Fixed memory consumption test in realease mode.

git-svn-id: https://svn.dealii.org/trunk@33163 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Mon, 14 Jul 2014 09:10:06 +0000 (09:10 +0000)]

Fix bug

git-svn-id: https://svn.dealii.org/trunk@33162 0785d39b-7218-0410-832d-ea1e28bc413d

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Luca Heltai [Mon, 14 Jul 2014 08:35:14 +0000 (08:35 +0000)]

Integrated branch manifold_id_intermediated into trunk.

git-svn-id: https://svn.dealii.org/trunk@33158 0785d39b-7218-0410-832d-ea1e28bc413d

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Luca Heltai [Mon, 14 Jul 2014 08:03:55 +0000 (08:03 +0000)]

Merged from trunk.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33157 0785d39b-7218-0410-832d-ea1e28bc413d

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Luca Heltai [Mon, 14 Jul 2014 06:52:09 +0000 (06:52 +0000)]

Fixed failing tests due to manifold id being an int.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33156 0785d39b-7218-0410-832d-ea1e28bc413d

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Luca Heltai [Sun, 13 Jul 2014 22:10:51 +0000 (22:10 +0000)]

Fixed get_boundary/manifold_ids. Removed all references to get_boundary in tria.cc

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33155 0785d39b-7218-0410-832d-ea1e28bc413d

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Luca Heltai [Sun, 13 Jul 2014 22:09:46 +0000 (22:09 +0000)]

Merged from trunk.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33154 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Jul 2014 18:54:31 +0000 (18:54 +0000)]

Fix some fallout from changing the size of manifold_id.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33153 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Jul 2014 18:38:58 +0000 (18:38 +0000)]

Arg...

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Wolfgang Bangerth [Sun, 13 Jul 2014 18:34:51 +0000 (18:34 +0000)]

Make it compile.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33151 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Jul 2014 18:14:05 +0000 (18:14 +0000)]

More documentation updates.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33150 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Jul 2014 18:13:43 +0000 (18:13 +0000)]

Enlarge manifold_id to unsigned int, as discussed on the mailing list.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33149 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Jul 2014 17:54:47 +0000 (17:54 +0000)]

Leave a note.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33148 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Jul 2014 14:15:37 +0000 (14:15 +0000)]

Minor comment updates.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33147 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Jul 2014 13:06:00 +0000 (13:06 +0000)]

Indent something.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33146 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Jul 2014 12:21:51 +0000 (12:21 +0000)]

Reshuffle items to have them sorted in alphabetical order.

git-svn-id: https://svn.dealii.org/trunk@33145 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Sat, 12 Jul 2014 20:46:44 +0000 (20:46 +0000)]

update readme.html to refer to muparser

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Wolfgang Bangerth [Sat, 12 Jul 2014 12:58:01 +0000 (12:58 +0000)]

Add test for previous commit.

git-svn-id: https://svn.dealii.org/trunk@33143 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 12 Jul 2014 12:57:51 +0000 (12:57 +0000)]

Work around a bug in PETSc whereby PETSc does not zero-initialize ghost elements of a vector.

git-svn-id: https://svn.dealii.org/trunk@33142 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Jul 2014 22:49:55 +0000 (22:49 +0000)]

Provide more links to video lectures.

git-svn-id: https://svn.dealii.org/trunk@33141 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Jul 2014 22:17:53 +0000 (22:17 +0000)]

Annotate some of the programs with links to the video lectures.

git-svn-id: https://svn.dealii.org/trunk@33140 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Fri, 11 Jul 2014 17:06:38 +0000 (17:06 +0000)]

Fix a bug when using 64bit indices.

git-svn-id: https://svn.dealii.org/trunk@33137 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Jul 2014 02:42:41 +0000 (02:42 +0000)]

Go through the rest of the introduction, the results section and some of the program. Make minor adjustments.

git-svn-id: https://svn.dealii.org/trunk@33135 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Jul 2014 02:42:35 +0000 (02:42 +0000)]

Remove a file we have not needed for a long time.

git-svn-id: https://svn.dealii.org/trunk@33134 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Jul 2014 02:42:30 +0000 (02:42 +0000)]

Group functions for more readable documentation.

git-svn-id: https://svn.dealii.org/trunk@33133 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Jul 2014 02:42:25 +0000 (02:42 +0000)]

Update documentation in a couple of places. Remove some code duplication.

git-svn-id: https://svn.dealii.org/trunk@33132 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Thu, 10 Jul 2014 14:34:02 +0000 (14:34 +0000)]

Reindent script files

git-svn-id: https://svn.dealii.org/trunk@33131 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Jul 2014 19:15:31 +0000 (19:15 +0000)]

Minor edits.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33130 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Jul 2014 18:52:07 +0000 (18:52 +0000)]

"geometrical" does not exist as a word :-)

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Wolfgang Bangerth [Wed, 9 Jul 2014 17:10:47 +0000 (17:10 +0000)]

Minor edits.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33128 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Jul 2014 17:10:31 +0000 (17:10 +0000)]

Minor edits.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33127 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Wed, 9 Jul 2014 14:46:35 +0000 (14:46 +0000)]

Make sure to generate all necessary symbols

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Wolfgang Bangerth [Wed, 9 Jul 2014 13:05:58 +0000 (13:05 +0000)]

Augment documentation.

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Wolfgang Bangerth [Wed, 9 Jul 2014 12:57:33 +0000 (12:57 +0000)]

Reindent.

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Wolfgang Bangerth [Wed, 9 Jul 2014 12:57:07 +0000 (12:57 +0000)]

Add notes for MUMPS.

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Wolfgang Bangerth [Wed, 9 Jul 2014 11:57:03 +0000 (11:57 +0000)]

Document how to compile Trilinos with direct solvers.

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Wolfgang Bangerth [Wed, 9 Jul 2014 11:54:27 +0000 (11:54 +0000)]

Document how to compile Trilinos with direct solvers.

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Martin Kronbichler [Wed, 9 Jul 2014 10:17:13 +0000 (10:17 +0000)]

Extend comment of direct solver class

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Martin Kronbichler [Wed, 9 Jul 2014 08:57:26 +0000 (08:57 +0000)]

Use alias to refer to multithreaded methods.

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Martin Kronbichler [Wed, 9 Jul 2014 08:33:16 +0000 (08:33 +0000)]

Try to avoid differences in roundoff by using weaker tolerance for Bicgstab solver

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Martin Kronbichler [Wed, 9 Jul 2014 08:01:15 +0000 (08:01 +0000)]

Patch by Uwe Koecher: select among Trilinos solvers

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Martin Kronbichler [Tue, 8 Jul 2014 08:19:47 +0000 (08:19 +0000)]

Document which basic linear algebra functions are currently multithreaded.

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Wolfgang Bangerth [Mon, 7 Jul 2014 10:55:27 +0000 (10:55 +0000)]

Move the publications site to the top-level of dealii.org to provide it with a more 'corporate' feel.

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Wolfgang Bangerth [Mon, 7 Jul 2014 10:52:15 +0000 (10:52 +0000)]

Fix markup.

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Wolfgang Bangerth [Mon, 7 Jul 2014 09:11:03 +0000 (09:11 +0000)]

Add one.

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Martin Kronbichler [Mon, 7 Jul 2014 08:33:06 +0000 (08:33 +0000)]

Update comment

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Fahad Alrashed [Sat, 5 Jul 2014 17:57:10 +0000 (17:57 +0000)]

Fixed a couple of call changes for PETSc 3.5.0

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Guido Kanschat [Fri, 4 Jul 2014 22:56:36 +0000 (22:56 +0000)]

write a debug file with the first residual even if we converge in one step

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Martin Kronbichler [Fri, 4 Jul 2014 13:46:44 +0000 (13:46 +0000)]

Implement some new Trilinos preconditioner. Tests.

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Wolfgang Bangerth [Fri, 4 Jul 2014 08:03:36 +0000 (08:03 +0000)]

Provide missing instantiations.

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Wolfgang Bangerth [Thu, 3 Jul 2014 07:52:41 +0000 (07:52 +0000)]

Add two.

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Wolfgang Bangerth [Wed, 2 Jul 2014 08:34:51 +0000 (08:34 +0000)]

Update output.

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Wolfgang Bangerth [Tue, 1 Jul 2014 14:55:26 +0000 (14:55 +0000)]

Fix markup.

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Daniel Arndt [Mon, 30 Jun 2014 23:49:21 +0000 (23:49 +0000)]

Fixed GridGenerator::merge_triangulations, Issue 197

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Martin Kronbichler [Mon, 30 Jun 2014 19:21:56 +0000 (19:21 +0000)]

Fix test

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Martin Kronbichler [Mon, 30 Jun 2014 11:50:56 +0000 (11:50 +0000)]

Avoid Epetra_MultiVector with 0 vectors

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Wolfgang Bangerth [Mon, 30 Jun 2014 11:34:33 +0000 (11:34 +0000)]

Fix markup.

git-svn-id: https://svn.dealii.org/trunk@33101 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 30 Jun 2014 10:23:46 +0000 (10:23 +0000)]

Add another testcase that currently fails, see issue 197 (https://code.google.com/p/dealii/issues/detail?id=197).

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Martin Kronbichler [Mon, 30 Jun 2014 10:23:34 +0000 (10:23 +0000)]

Commit bug in Trilinos precondition

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Luca Heltai [Sun, 29 Jun 2014 19:45:47 +0000 (19:45 +0000)]

Fixed some comments for boundary ids and manifold ids.

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Luca Heltai [Sat, 28 Jun 2014 18:37:07 +0000 (18:37 +0000)]

Fixed serialization issue with manifold ids.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33097 0785d39b-7218-0410-832d-ea1e28bc413d

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Luca Heltai [Sat, 28 Jun 2014 09:21:12 +0000 (09:21 +0000)]

Merged from trunk.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33096 0785d39b-7218-0410-832d-ea1e28bc413d

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Luca Heltai [Sat, 28 Jun 2014 09:12:55 +0000 (09:12 +0000)]

Fixed hp/solution_transfer_05 output to be valid with or without zlib

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33095 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Fri, 27 Jun 2014 20:31:28 +0000 (20:31 +0000)]

Simplify FEEvaluation routines considerably by merging all functionality into FEEvaluation. The internal implementation is done in internal::FEEvaluationImpl that provides the same efficient kernels as before, but frees the user from tedious selection of the appropriate kernel for the element in use.

git-svn-id: https://svn.dealii.org/trunk@33094 0785d39b-7218-0410-832d-ea1e28bc413d

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Luca Heltai [Fri, 27 Jun 2014 17:15:40 +0000 (17:15 +0000)]

Fixed a couple of tests. Still in trouble with serialization.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33093 0785d39b-7218-0410-832d-ea1e28bc413d

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Luca Heltai [Fri, 27 Jun 2014 08:51:13 +0000 (08:51 +0000)]

Merged From trunk.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33092 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 26 Jun 2014 19:30:26 +0000 (19:30 +0000)]

add grad-div residual

git-svn-id: https://svn.dealii.org/trunk@33090 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 26 Jun 2014 19:30:08 +0000 (19:30 +0000)]

add debugging function

git-svn-id: https://svn.dealii.org/trunk@33089 0785d39b-7218-0410-832d-ea1e28bc413d

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Luca Heltai [Thu, 26 Jun 2014 13:55:57 +0000 (13:55 +0000)]

Merged from trunk r33084 through r33087.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33088 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Thu, 26 Jun 2014 12:05:54 +0000 (12:05 +0000)]

Need to keep constrained entries also when giving both row and column indices if so requested.

git-svn-id: https://svn.dealii.org/trunk@33087 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Thu, 26 Jun 2014 08:30:27 +0000 (08:30 +0000)]

Testsuite: Disable tests for Boost's Cuthill-McKee implementation

git-svn-id: https://svn.dealii.org/trunk@33086 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Wed, 25 Jun 2014 20:33:49 +0000 (20:33 +0000)]

CMake: Bugfix: Also add tbb specific include directories to the list of user include dirs

git-svn-id: https://svn.dealii.org/trunk@33085 0785d39b-7218-0410-832d-ea1e28bc413d

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Luca Heltai [Wed, 25 Jun 2014 17:08:06 +0000 (17:08 +0000)]

Merged from trunk.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33084 0785d39b-7218-0410-832d-ea1e28bc413d

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Daniel Arndt [Wed, 25 Jun 2014 11:47:16 +0000 (11:47 +0000)]

Improve readability of version detection for p4est and Trilinos

git-svn-id: https://svn.dealii.org/trunk@33083 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Tue, 24 Jun 2014 07:21:44 +0000 (07:21 +0000)]

Tentatively provide fix that chooses thread-safe assembly code path also in other cases with Trilinos version >= 11.9. However, it requires one more fix in Trilinos.

git-svn-id: https://svn.dealii.org/trunk@33082 0785d39b-7218-0410-832d-ea1e28bc413d

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