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https://gitweb.dealii.org/ - dealii-svn.git/log
turcksin [Mon, 3 Jun 2013 14:09:16 +0000 (14:09 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29740
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young [Mon, 3 Jun 2013 11:32:45 +0000 (11:32 +0000)]
Syntax tweak
git-svn-id: https://svn.dealii.org/trunk@29739
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young [Mon, 3 Jun 2013 10:33:47 +0000 (10:33 +0000)]
Deal kindly with PETSC_USE_COMPLEX in SLEPcWrappers.
git-svn-id: https://svn.dealii.org/trunk@29738
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young [Mon, 3 Jun 2013 10:33:11 +0000 (10:33 +0000)]
Deal kindly with PETSC_USE_COMPLEX in PETScWrappers.
git-svn-id: https://svn.dealii.org/trunk@29737
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young [Mon, 3 Jun 2013 10:01:02 +0000 (10:01 +0000)]
Deal with PETSC_USE_COMPLEX in PETScWrappers.
git-svn-id: https://svn.dealii.org/trunk@29736
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bangerth [Mon, 3 Jun 2013 04:41:31 +0000 (04:41 +0000)]
Fix previous change.
git-svn-id: https://svn.dealii.org/trunk@29735
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bangerth [Mon, 3 Jun 2013 04:25:55 +0000 (04:25 +0000)]
Catch exceptions also in WorkStream, similar to the recent change to tasks.
git-svn-id: https://svn.dealii.org/trunk@29734
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heister [Mon, 3 Jun 2013 00:30:01 +0000 (00:30 +0000)]
update test
git-svn-id: https://svn.dealii.org/trunk@29732
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heister [Sun, 2 Jun 2013 23:51:29 +0000 (23:51 +0000)]
step-50: clean up, comparison with AMG
git-svn-id: https://svn.dealii.org/trunk@29731
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heister [Sun, 2 Jun 2013 23:07:17 +0000 (23:07 +0000)]
work on fixing multigrid in parallel
git-svn-id: https://svn.dealii.org/trunk@29730
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heister [Sun, 2 Jun 2013 22:22:01 +0000 (22:22 +0000)]
update test
git-svn-id: https://svn.dealii.org/trunk@29729
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heister [Sun, 2 Jun 2013 21:00:24 +0000 (21:00 +0000)]
disallow get_dof_indices() and a few others for nonactive cells
git-svn-id: https://svn.dealii.org/trunk@29728
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bangerth [Sun, 2 Jun 2013 18:13:30 +0000 (18:13 +0000)]
More gracefully handle the case that an exception is thrown on a task created by Threads::new_task. Unfortunately, I could not come up with a way to write a test for this case :-(
git-svn-id: https://svn.dealii.org/trunk@29727
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heister [Sat, 1 Jun 2013 20:33:00 +0000 (20:33 +0000)]
add some ignores
git-svn-id: https://svn.dealii.org/trunk@29725
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heister [Sat, 1 Jun 2013 20:31:25 +0000 (20:31 +0000)]
fix a bunch of tests
git-svn-id: https://svn.dealii.org/trunk@29724
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heister [Sat, 1 Jun 2013 20:24:19 +0000 (20:24 +0000)]
fix another spot where we ask an inactive cell for the subdomain
git-svn-id: https://svn.dealii.org/trunk@29723
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heister [Sat, 1 Jun 2013 20:23:49 +0000 (20:23 +0000)]
missed one directory with svn:ignores for cmake temp files
git-svn-id: https://svn.dealii.org/trunk@29722
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heister [Sat, 1 Jun 2013 19:53:58 +0000 (19:53 +0000)]
add cmake temp files to the ignores in the example directories, because we often do insource builds of the examples
git-svn-id: https://svn.dealii.org/trunk@29721
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heister [Sat, 1 Jun 2013 19:24:44 +0000 (19:24 +0000)]
make a lot more tests work
git-svn-id: https://svn.dealii.org/trunk@29720
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heister [Sat, 1 Jun 2013 19:10:23 +0000 (19:10 +0000)]
attempt to fix failing multigrid tests (is_locally_owned only works with active cells now)
git-svn-id: https://svn.dealii.org/trunk@29719
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bangerth [Sat, 1 Jun 2013 01:19:31 +0000 (01:19 +0000)]
Move default initialization to a central location.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29718
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bangerth [Sat, 1 Jun 2013 01:15:33 +0000 (01:15 +0000)]
Add some documentation.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29717
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turcksin [Sat, 1 Jun 2013 01:15:06 +0000 (01:15 +0000)]
Timo's fix for cmake output.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29716
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bangerth [Sat, 1 Jun 2013 01:10:38 +0000 (01:10 +0000)]
Add DEAL_II_WITH_64BIT_INDICES to the list of variables that are cached.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29715
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bangerth [Sat, 1 Jun 2013 00:42:54 +0000 (00:42 +0000)]
Update output.
git-svn-id: https://svn.dealii.org/trunk@29713
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turcksin [Sat, 1 Jun 2013 00:38:29 +0000 (00:38 +0000)]
Use an existing macro to set the default indices to 32bit.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29712
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heister [Sat, 1 Jun 2013 00:24:08 +0000 (00:24 +0000)]
also delete mpi OK files in make clean
git-svn-id: https://svn.dealii.org/trunk@29711
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heister [Sat, 1 Jun 2013 00:22:23 +0000 (00:22 +0000)]
fix svg out that with new subdomain changes
git-svn-id: https://svn.dealii.org/trunk@29710
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turcksin [Sat, 1 Jun 2013 00:20:15 +0000 (00:20 +0000)]
By default uses 32bit indices.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29709
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heister [Sat, 1 Jun 2013 00:03:48 +0000 (00:03 +0000)]
update tests to produce output on each cpu
git-svn-id: https://svn.dealii.org/trunk@29708
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heister [Fri, 31 May 2013 23:57:15 +0000 (23:57 +0000)]
fix last commit
git-svn-id: https://svn.dealii.org/trunk@29707
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heister [Fri, 31 May 2013 23:54:31 +0000 (23:54 +0000)]
make sure to close the file
git-svn-id: https://svn.dealii.org/trunk@29706
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turcksin [Fri, 31 May 2013 23:25:45 +0000 (23:25 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29705
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heister [Fri, 31 May 2013 23:08:39 +0000 (23:08 +0000)]
make test work
git-svn-id: https://svn.dealii.org/trunk@29704
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turcksin [Fri, 31 May 2013 23:06:26 +0000 (23:06 +0000)]
Fix a test.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29703
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heister [Fri, 31 May 2013 23:00:36 +0000 (23:00 +0000)]
subdomainids should only work for active cells, enforce this. Also forbid is_artificial(), is_ghost(), and is_locally_owned() if not active.
git-svn-id: https://svn.dealii.org/trunk@29702
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turcksin [Fri, 31 May 2013 22:58:10 +0000 (22:58 +0000)]
Add the preprocessor command to use 64bit global indices to CMake and check that PETSc and Trilinos are compatible with 64bit indices.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29701
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heister [Fri, 31 May 2013 22:34:35 +0000 (22:34 +0000)]
update test
git-svn-id: https://svn.dealii.org/trunk@29700
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heister [Fri, 31 May 2013 22:31:33 +0000 (22:31 +0000)]
tests should not use is_artificial() etc on cells that are not active
git-svn-id: https://svn.dealii.org/trunk@29699
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heister [Fri, 31 May 2013 22:13:52 +0000 (22:13 +0000)]
skip parts of loop in distribute_dofs() that is not necessary
git-svn-id: https://svn.dealii.org/trunk@29698
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bangerth [Fri, 31 May 2013 21:53:39 +0000 (21:53 +0000)]
More doc updates.
git-svn-id: https://svn.dealii.org/trunk@29697
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bangerth [Fri, 31 May 2013 21:46:31 +0000 (21:46 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@29696
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bangerth [Fri, 31 May 2013 20:46:10 +0000 (20:46 +0000)]
Properly format comments.
git-svn-id: https://svn.dealii.org/trunk@29695
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kanschat [Fri, 31 May 2013 20:02:40 +0000 (20:02 +0000)]
yet another successful test
git-svn-id: https://svn.dealii.org/trunk@29694
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kanschat [Fri, 31 May 2013 19:22:50 +0000 (19:22 +0000)]
towards mixed cg/dg mg
git-svn-id: https://svn.dealii.org/trunk@29693
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turcksin [Fri, 31 May 2013 18:08:15 +0000 (18:08 +0000)]
Fix some tests.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29692
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kanschat [Fri, 31 May 2013 16:40:56 +0000 (16:40 +0000)]
remove double loop by two outputs
git-svn-id: https://svn.dealii.org/trunk@29689
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turcksin [Fri, 31 May 2013 16:21:46 +0000 (16:21 +0000)]
Merge from mainline + fix a bug in petsc_vector_base.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29688
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kronbichler [Fri, 31 May 2013 16:01:25 +0000 (16:01 +0000)]
Better way for recording the exception: Only print its name, not the full info in order to avoid differences in encoding anonymous namespaces and future changes in function names
git-svn-id: https://svn.dealii.org/trunk@29687
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turcksin [Fri, 31 May 2013 15:59:41 +0000 (15:59 +0000)]
Fix a bug in trilinos_vector_base.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29686
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kronbichler [Fri, 31 May 2013 15:49:44 +0000 (15:49 +0000)]
Adjust output
git-svn-id: https://svn.dealii.org/trunk@29685
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turcksin [Fri, 31 May 2013 15:43:28 +0000 (15:43 +0000)]
Fix some tests.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29684
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turcksin [Fri, 31 May 2013 14:16:07 +0000 (14:16 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29683
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kronbichler [Fri, 31 May 2013 12:51:37 +0000 (12:51 +0000)]
Remove stray typename
git-svn-id: https://svn.dealii.org/trunk@29682
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kronbichler [Fri, 31 May 2013 12:49:55 +0000 (12:49 +0000)]
Fix test.
git-svn-id: https://svn.dealii.org/trunk@29681
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kronbichler [Fri, 31 May 2013 11:37:50 +0000 (11:37 +0000)]
Fix uninitialized memory.
git-svn-id: https://svn.dealii.org/trunk@29680
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kronbichler [Fri, 31 May 2013 09:48:26 +0000 (09:48 +0000)]
Fix a few bugs with distribute. constraint_matrix_trilinos_bug/ncpu_10 still not working. Try to figure it out.
git-svn-id: https://svn.dealii.org/trunk@29679
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kronbichler [Fri, 31 May 2013 08:14:35 +0000 (08:14 +0000)]
Make distribute() work properly with parallel::distributed::Vector. Also cleanup in extracting locally owned dofs of Trilinos vector. Distributing constraints with parallel::distributed::Vector has become simpler now, so use that in step-48.
git-svn-id: https://svn.dealii.org/trunk@29678
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bangerth [Fri, 31 May 2013 04:53:43 +0000 (04:53 +0000)]
Make ConstraintMatrix::distribute also work for block vectors. Needs a couple extra functions in the PETSc block vectors.
git-svn-id: https://svn.dealii.org/trunk@29677
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bangerth [Fri, 31 May 2013 04:51:41 +0000 (04:51 +0000)]
Remove tests that now no longer make sense.
git-svn-id: https://svn.dealii.org/trunk@29676
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bangerth [Fri, 31 May 2013 04:21:10 +0000 (04:21 +0000)]
Improve documentation slightly.
git-svn-id: https://svn.dealii.org/trunk@29675
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bangerth [Thu, 30 May 2013 22:29:18 +0000 (22:29 +0000)]
Check in a revision of the ConstraintMatrix::distribute patch. I'm not sure it actually works but the network here is going to shut down in a few minutes and I'd like to have it sent to the tester. Will re-evaluate later today.
git-svn-id: https://svn.dealii.org/trunk@29674
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heister [Thu, 30 May 2013 21:47:19 +0000 (21:47 +0000)]
revert accidental change from r29647
git-svn-id: https://svn.dealii.org/trunk@29673
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heister [Thu, 30 May 2013 21:41:20 +0000 (21:41 +0000)]
revert accidental change from r29647
git-svn-id: https://svn.dealii.org/trunk@29672
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bangerth [Thu, 30 May 2013 18:47:53 +0000 (18:47 +0000)]
Add necessary conversion.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29669
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heister [Thu, 30 May 2013 00:38:37 +0000 (00:38 +0000)]
update test output
git-svn-id: https://svn.dealii.org/trunk@29668
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heister [Thu, 30 May 2013 00:36:51 +0000 (00:36 +0000)]
fix test and output
git-svn-id: https://svn.dealii.org/trunk@29667
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heister [Thu, 30 May 2013 00:35:40 +0000 (00:35 +0000)]
add MPILogInitAll helper class for mpi tests
git-svn-id: https://svn.dealii.org/trunk@29666
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turcksin [Wed, 29 May 2013 23:08:52 +0000 (23:08 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29665
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kronbichler [Wed, 29 May 2013 08:09:34 +0000 (08:09 +0000)]
Need to call update_ghost_values with the current scheme of distribute
git-svn-id: https://svn.dealii.org/trunk@29664
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turcksin [Tue, 28 May 2013 20:43:53 +0000 (20:43 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29663
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bangerth [Tue, 28 May 2013 20:00:27 +0000 (20:00 +0000)]
Revert changes to ConstraintMatrix::distribute, see bug #51.
git-svn-id: https://svn.dealii.org/trunk@29662
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kanschat [Tue, 28 May 2013 16:05:02 +0000 (16:05 +0000)]
filter out trilinos and petsc if not configured
git-svn-id: https://svn.dealii.org/trunk@29661
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kronbichler [Tue, 28 May 2013 15:57:13 +0000 (15:57 +0000)]
Adjust test case for new scheme for constraints.
git-svn-id: https://svn.dealii.org/trunk@29660
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bangerth [Tue, 28 May 2013 14:47:25 +0000 (14:47 +0000)]
Minor edits.
git-svn-id: https://svn.dealii.org/trunk@29659
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kronbichler [Tue, 28 May 2013 14:06:58 +0000 (14:06 +0000)]
Need to build constraints between ghost cells also in 2d. Let's see if this fixes the currently failing tests.
git-svn-id: https://svn.dealii.org/trunk@29658
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kanschat [Tue, 28 May 2013 13:36:24 +0000 (13:36 +0000)]
new ouptu format
git-svn-id: https://svn.dealii.org/trunk@29657
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kronbichler [Tue, 28 May 2013 12:05:12 +0000 (12:05 +0000)]
Another minor fix.
git-svn-id: https://svn.dealii.org/trunk@29656
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kronbichler [Tue, 28 May 2013 07:05:33 +0000 (07:05 +0000)]
Zero out ghosts in parallel vector explicitly when setting the constraints to zero as they will be zeroed out anyway.
git-svn-id: https://svn.dealii.org/trunk@29655
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kronbichler [Tue, 28 May 2013 06:26:59 +0000 (06:26 +0000)]
Should not call ConstraintMatrix::distribute on vector with ghost values
git-svn-id: https://svn.dealii.org/trunk@29654
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bangerth [Tue, 28 May 2013 02:57:41 +0000 (02:57 +0000)]
Adjust output to what is presumably the correct one.
git-svn-id: https://svn.dealii.org/trunk@29653
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kanschat [Mon, 27 May 2013 22:35:54 +0000 (22:35 +0000)]
reorder levels and make output more machine readable
git-svn-id: https://svn.dealii.org/trunk@29652
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bangerth [Mon, 27 May 2013 21:47:30 +0000 (21:47 +0000)]
Minor adjustment, but this doesn't fix the problem.
git-svn-id: https://svn.dealii.org/trunk@29651
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bangerth [Mon, 27 May 2013 21:04:54 +0000 (21:04 +0000)]
Avoid some communication by improving on Timo's patch in r29631.
git-svn-id: https://svn.dealii.org/trunk@29650
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kronbichler [Mon, 27 May 2013 15:25:21 +0000 (15:25 +0000)]
Two minor improvements
git-svn-id: https://svn.dealii.org/trunk@29649
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heister [Mon, 27 May 2013 14:10:23 +0000 (14:10 +0000)]
fix mg number cache
git-svn-id: https://svn.dealii.org/trunk@29648
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heister [Mon, 27 May 2013 13:55:05 +0000 (13:55 +0000)]
multigrid copy_indices another try
git-svn-id: https://svn.dealii.org/trunk@29647
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heister [Mon, 27 May 2013 13:47:17 +0000 (13:47 +0000)]
multigrid copy_indices maybe more correct now?
git-svn-id: https://svn.dealii.org/trunk@29646
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kanschat [Mon, 27 May 2013 13:39:23 +0000 (13:39 +0000)]
test copy indices
git-svn-id: https://svn.dealii.org/trunk@29645
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kanschat [Mon, 27 May 2013 13:39:17 +0000 (13:39 +0000)]
reintroduce constraints and add debug function
git-svn-id: https://svn.dealii.org/trunk@29644
0785d39b -7218-0410-832d-
ea1e28bc413d
heister [Mon, 27 May 2013 12:46:51 +0000 (12:46 +0000)]
fill new copy_indices even more correct
git-svn-id: https://svn.dealii.org/trunk@29643
0785d39b -7218-0410-832d-
ea1e28bc413d
heister [Mon, 27 May 2013 12:40:22 +0000 (12:40 +0000)]
fill new copy_indices correctly
git-svn-id: https://svn.dealii.org/trunk@29642
0785d39b -7218-0410-832d-
ea1e28bc413d
heister [Mon, 27 May 2013 12:35:42 +0000 (12:35 +0000)]
step-50: parellel dataout, use IndexSet for ConstraintMatrix
git-svn-id: https://svn.dealii.org/trunk@29641
0785d39b -7218-0410-832d-
ea1e28bc413d
heister [Mon, 27 May 2013 12:34:19 +0000 (12:34 +0000)]
fill new mg copy_indices variables
git-svn-id: https://svn.dealii.org/trunk@29640
0785d39b -7218-0410-832d-
ea1e28bc413d
kanschat [Mon, 27 May 2013 12:21:01 +0000 (12:21 +0000)]
fix distributed functionality in copy to/from mg
git-svn-id: https://svn.dealii.org/trunk@29639
0785d39b -7218-0410-832d-
ea1e28bc413d
kronbichler [Mon, 27 May 2013 12:10:02 +0000 (12:10 +0000)]
Implement TrilinosWrappers::VectorBase::locally_owned_elements for vectors with non-contiguous local range. Fix set_zero for parallel::distributed::Vector
git-svn-id: https://svn.dealii.org/trunk@29638
0785d39b -7218-0410-832d-
ea1e28bc413d
kanschat [Mon, 27 May 2013 11:51:02 +0000 (11:51 +0000)]
two new fields
git-svn-id: https://svn.dealii.org/trunk@29637
0785d39b -7218-0410-832d-
ea1e28bc413d
heister [Mon, 27 May 2013 09:28:30 +0000 (09:28 +0000)]
update test
git-svn-id: https://svn.dealii.org/trunk@29636
0785d39b -7218-0410-832d-
ea1e28bc413d
heister [Mon, 27 May 2013 09:27:45 +0000 (09:27 +0000)]
adding test that shows broken ConstraintMatrix::distribute()
git-svn-id: https://svn.dealii.org/trunk@29635
0785d39b -7218-0410-832d-
ea1e28bc413d
heister [Mon, 27 May 2013 09:24:38 +0000 (09:24 +0000)]
git-svn-id: https://svn.dealii.org/trunk@29634
0785d39b -7218-0410-832d-
ea1e28bc413d
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