]>
https://gitweb.dealii.org/ - dealii.git/log
Timo Heister [Thu, 16 Feb 2023 14:35:27 +0000 (09:35 -0500)]
CI: Jenkins increase timeout
With all MPI tests we are now often close to the 2 hour mark (depends on
test ordering). Increase the timeout to avoid problems like in #14803.
David Wells [Wed, 15 Feb 2023 15:19:33 +0000 (10:19 -0500)]
Merge pull request #14800 from bangerth/grammar
Fix a grammar mistake.
Daniel Arndt [Wed, 15 Feb 2023 13:19:29 +0000 (08:19 -0500)]
Merge pull request #14797 from tjhei/signed_char
Wolfgang Bangerth [Wed, 15 Feb 2023 04:23:21 +0000 (21:23 -0700)]
Fix a grammar mistake.
While there, also use mark-up that's a bit easier to read.
Peter Munch [Tue, 14 Feb 2023 22:32:10 +0000 (23:32 +0100)]
Merge pull request #14796 from tjhei/remove_comment
remove useless comment
Timo Heister [Tue, 14 Feb 2023 22:03:23 +0000 (17:03 -0500)]
fix wrong sign of char in MF
On ARM char defaults to unsigned char, which will break the matrix free
face loop. Fix this by being explicit.
Fixes:
/home/ubuntu/dealii-9.4.2/include/deal.II/matrix_free/face_setup_internal.h:522:35:
warning: comparison is always false due to limited range of data type
[-Wtype-limits]
Timo Heister [Tue, 14 Feb 2023 22:01:14 +0000 (17:01 -0500)]
remove useless comment
Matthias Maier [Tue, 14 Feb 2023 21:26:17 +0000 (21:26 +0000)]
Merge pull request #14771 from masterleinad/use_try_compile_check_compiler_setup
Use try_compile in macro_check_compiler_setup.cmake
David Wells [Tue, 14 Feb 2023 13:32:27 +0000 (08:32 -0500)]
Merge pull request #14790 from tjhei/doc_grid_gen_simplex
doc: fix GridGenerator::convert_hypercube_to_simplex_mesh
David Wells [Tue, 14 Feb 2023 13:32:02 +0000 (08:32 -0500)]
Merge pull request #14792 from tjhei/doc_simplex2
doc: move simplex function from module
David Wells [Tue, 14 Feb 2023 13:29:52 +0000 (08:29 -0500)]
Merge pull request #14793 from tjhei/doc_fe_dgrt
doc: replace FE_DGRT with correct name
Daniel Arndt [Wed, 8 Feb 2023 21:49:11 +0000 (16:49 -0500)]
Use try_compile in macro_check_compiler_setup.cmake
Martin Kronbichler [Mon, 13 Feb 2023 16:55:04 +0000 (17:55 +0100)]
Merge pull request #14770 from bangerth/undepr
Replace a ReferenceCell function call by a non-deprecated one.
Timo Heister [Mon, 13 Feb 2023 14:56:47 +0000 (09:56 -0500)]
doc: replace FE_DGRT with correct name
Timo Heister [Mon, 13 Feb 2023 14:41:36 +0000 (09:41 -0500)]
doc: move simplex function from module
The function should be in GridGenerator...
Timo Heister [Mon, 13 Feb 2023 14:35:38 +0000 (09:35 -0500)]
doc: fix GridGenerator::convert_hypercube_to_simplex_mesh
Daniel Arndt [Mon, 13 Feb 2023 13:12:34 +0000 (08:12 -0500)]
Merge pull request #14780 from drwells/simplex-volume
Martin Kronbichler [Sun, 12 Feb 2023 11:01:32 +0000 (12:01 +0100)]
Merge pull request #14789 from tjhei/mf_doc_mapping_update_flags
document MatrixFree mapping_update_flags
Timo Heister [Sat, 11 Feb 2023 23:23:37 +0000 (18:23 -0500)]
Merge pull request #14788 from marcfehling/coarsen-bug
Fix hp decision on coarse level cells.
Timo Heister [Sat, 11 Feb 2023 21:14:38 +0000 (16:14 -0500)]
document MatrixFree mapping_update_flags
David Wells [Sat, 11 Feb 2023 20:26:12 +0000 (15:26 -0500)]
Merge pull request #14786 from masterleinad/fix_check_for_always_inline
Fix DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE with -Werror
David Wells [Sat, 11 Feb 2023 20:21:10 +0000 (15:21 -0500)]
Merge pull request #14716 from luca-heltai/stefanozampini/tests
Minor fixes for PETSc testing
Marc Fehling [Sat, 11 Feb 2023 04:01:03 +0000 (21:01 -0700)]
Fix hp decision bug on coarse level cells.
Daniel Arndt [Sat, 11 Feb 2023 04:49:39 +0000 (23:49 -0500)]
Merge pull request #14775 from bangerth/comment-2
Marc Fehling [Sat, 11 Feb 2023 02:42:57 +0000 (19:42 -0700)]
Merge pull request #14787 from dealii/tjhei-patch-1
update CI badges in README
Marc Fehling [Sat, 11 Feb 2023 02:34:57 +0000 (19:34 -0700)]
Merge pull request #14782 from bangerth/step-2
Minor clarification in step-2.
Marc Fehling [Sat, 11 Feb 2023 02:34:29 +0000 (19:34 -0700)]
Merge pull request #14785 from masterleinad/cmake_version_update
Remove checks for CMake versions prior to 3.13.4
Timo Heister [Fri, 10 Feb 2023 22:26:43 +0000 (17:26 -0500)]
update CI badges in README
Wolfgang Bangerth [Fri, 10 Feb 2023 18:01:54 +0000 (11:01 -0700)]
Standardize 2D/3D -> 2d/3d in documentation comments.
Daniel Arndt [Fri, 10 Feb 2023 19:05:18 +0000 (14:05 -0500)]
Merge pull request #14776 from bangerth/comment-3
Daniel Arndt [Fri, 10 Feb 2023 17:57:48 +0000 (12:57 -0500)]
Merge pull request #14777 from bangerth/comment-4
Daniel Arndt [Fri, 10 Feb 2023 14:18:05 +0000 (09:18 -0500)]
Try -diag-disable=16219
David Wells [Thu, 9 Feb 2023 18:21:15 +0000 (13:21 -0500)]
Make GridTools::volume() work with simplices.
David Wells [Fri, 10 Feb 2023 14:23:18 +0000 (09:23 -0500)]
Merge pull request #14774 from bangerth/comment
Standardize 2D/3D -> 2d/3d in comments.
Daniel Arndt [Fri, 10 Feb 2023 04:09:01 +0000 (23:09 -0500)]
Fix DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE with -Werror
Daniel Arndt [Fri, 10 Feb 2023 03:52:38 +0000 (22:52 -0500)]
Remove checks for CMake versions prior to 3.13.4
Daniel Arndt [Thu, 9 Feb 2023 22:22:18 +0000 (17:22 -0500)]
Merge pull request #14754 from bangerth/DerivativeForm
Fixes https://github.com/dealii/dealii/issues/14748
Wolfgang Bangerth [Thu, 9 Feb 2023 22:20:10 +0000 (15:20 -0700)]
Adjust a test output.
Daniel Arndt [Thu, 9 Feb 2023 21:57:18 +0000 (16:57 -0500)]
Merge pull request #14779 from singima/more_kinsol_edits
Wolfgang Bangerth [Thu, 9 Feb 2023 21:55:42 +0000 (14:55 -0700)]
Merge pull request #14773 from masterleinad/fix_clang_15_cuda_warnings
Fix warnings with Clang-15+Cuda
Wolfgang Bangerth [Thu, 9 Feb 2023 21:16:48 +0000 (14:16 -0700)]
Minor clarification.
Timo Heister [Thu, 9 Feb 2023 16:41:19 +0000 (11:41 -0500)]
Merge pull request #14769 from bangerth/fixed-power
Fix an assertion.
Sean Ingimarson [Thu, 9 Feb 2023 13:31:20 +0000 (08:31 -0500)]
doc edits for KINSol
Daniel Arndt [Thu, 9 Feb 2023 12:42:07 +0000 (07:42 -0500)]
Use Utilities::fixed_power in one place.
Co-authored-by: Wolfgang Bangerth <bangerth@colostate.edu>
David Wells [Thu, 9 Feb 2023 12:39:30 +0000 (07:39 -0500)]
Merge pull request #14778 from bangerth/types
Fix a comment for types::boundary_id.
Peter Munch [Thu, 9 Feb 2023 10:13:46 +0000 (11:13 +0100)]
Merge pull request #14766 from mschreter/find_all_active_cells_around_point_2
Extend test `find_all_active_cells_around_point_04`
Wolfgang Bangerth [Thu, 9 Feb 2023 03:46:08 +0000 (20:46 -0700)]
Fix a comment for types::boundary_id.
Wolfgang Bangerth [Thu, 9 Feb 2023 03:23:17 +0000 (20:23 -0700)]
Standardize 2D/3D -> 2d/3d in a few strings.
Wolfgang Bangerth [Thu, 9 Feb 2023 03:19:36 +0000 (20:19 -0700)]
Standardize 2D/3D -> 2d/3d in the tutorials.
Wolfgang Bangerth [Thu, 9 Feb 2023 03:08:07 +0000 (20:08 -0700)]
Standardize 2D/3D -> 2d/3d in comments.
Daniel Arndt [Thu, 9 Feb 2023 02:55:47 +0000 (21:55 -0500)]
Fix warnings with Clang-15+Cuda
Wolfgang Bangerth [Thu, 9 Feb 2023 01:40:42 +0000 (18:40 -0700)]
Merge pull request #14759 from Darth-Veidim/darth-branch
changed std::pow to Utilities::pow in include/ source/
Wolfgang Bangerth [Thu, 9 Feb 2023 01:25:53 +0000 (18:25 -0700)]
Merge pull request #14736 from luca-heltai/stefanozampini/petscsf
Add support for partitioning with PetscSF
Wolfgang Bangerth [Wed, 8 Feb 2023 23:45:57 +0000 (16:45 -0700)]
Merge pull request #14760 from tjhei/diag-ignore-cast-function-type
ignore external cast-function-type warnings
Wolfgang Bangerth [Wed, 8 Feb 2023 22:57:29 +0000 (15:57 -0700)]
Merge pull request #14761 from drwells/fe-dgp-regularity
Fix the support points for FE_SimplexDGP.
Wolfgang Bangerth [Wed, 8 Feb 2023 21:46:58 +0000 (14:46 -0700)]
Replace a function call by a non-deprecated one.
Wolfgang Bangerth [Wed, 8 Feb 2023 20:56:53 +0000 (13:56 -0700)]
Merge pull request #14762 from drwells/qprojector-orientation
QProjector: minor orientation fixes.
Wolfgang Bangerth [Wed, 8 Feb 2023 20:42:37 +0000 (13:42 -0700)]
Fix an assertion.
Vadim Gallyamov [Wed, 8 Feb 2023 20:48:33 +0000 (21:48 +0100)]
changed std::pow to Utilities::fixed_power in include/ source/
Timo Heister [Wed, 8 Feb 2023 11:51:57 +0000 (06:51 -0500)]
Merge pull request #14767 from bangerth/cleanups
Minor cleanups in PETSc interfaces.
Daniel Arndt [Wed, 8 Feb 2023 02:55:49 +0000 (21:55 -0500)]
Merge pull request #14765 from pengfej/fixing_random_number_generator
Wolfgang Bangerth [Wed, 8 Feb 2023 00:30:12 +0000 (17:30 -0700)]
Minor cleanups in PETSc interfaces.
Specifically, silence a warning about an unused variable. While there,
mark a couple more variables as 'const'.
Wolfgang Bangerth [Tue, 7 Feb 2023 16:59:05 +0000 (09:59 -0700)]
Add test.
Magdalena Schreter [Tue, 7 Feb 2023 19:25:34 +0000 (20:25 +0100)]
extend find_all_active_cells_around_point_04.cc
Pengfei Jia [Tue, 7 Feb 2023 18:50:32 +0000 (13:50 -0500)]
Update source/base/mu_parser_internal.cc
Co-authored-by: Timo Heister <timo.heister@gmail.com>
Pengfei Jia [Tue, 7 Feb 2023 18:26:29 +0000 (13:26 -0500)]
indent
Pengfei Jia [Tue, 7 Feb 2023 18:25:32 +0000 (13:25 -0500)]
Adding tests and fixing comments
Pengfei Jia [Tue, 7 Feb 2023 17:17:31 +0000 (12:17 -0500)]
Fixing random number generator function parser
Daniel Arndt [Tue, 7 Feb 2023 13:35:57 +0000 (08:35 -0500)]
Merge pull request #14728 from peterrum/find_all_active_cells_around_point
Peter Munch [Wed, 25 Jan 2023 22:17:53 +0000 (23:17 +0100)]
Fix find_all_active_cells_around_point()
Co-authored-by: Magdalena Schreter <schreter.magdalena@gmail.com>
Marc Fehling [Tue, 7 Feb 2023 07:41:50 +0000 (00:41 -0700)]
Merge pull request #14763 from Rombur/static_tests
Don't use static variables in tests
Bruno Turcksin [Tue, 7 Feb 2023 02:40:44 +0000 (21:40 -0500)]
Don't use static variables in tests
David Wells [Tue, 7 Feb 2023 02:04:05 +0000 (21:04 -0500)]
QProjector: minor orientation fixes.
David Wells [Tue, 7 Feb 2023 02:02:59 +0000 (21:02 -0500)]
Fix the support points for FE_SimplexDGP.
Timo Heister [Tue, 7 Feb 2023 00:19:11 +0000 (19:19 -0500)]
ignore external cast-function-type warnings
When building on Ubuntu 22.04 (gcc 11.3) with OpenMPI I am getting the
following warnings:
```
[ 58%] Building CXX object
source/base/CMakeFiles/obj_base_release.dir/symbolic_function.cc.o
In file included from
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277,
from
/usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2887,
from
/home/runner/dealii-candi/tmp/build/deal.II-master/include/deal.II/base/config.h:576,
from
/home/runner/dealii-candi/tmp/unpack/deal.II-master/include/deal.II/base/symbolic_function.templates.h:19,
from
/home/runner/dealii-candi/tmp/unpack/deal.II-master/source/base/symbolic_function.cc:16:
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:
In member function ‘virtual void MPI::Op::Init(void (*)(const void*,
void*, int, const MPI::Datatype&), bool)’:
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25:
warning: cast between incompatible function types from ‘void (*)(void*,
void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*,
ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*,
ompi_datatype_t**)’ [-Wcast-function-type]
121 | (void)MPI_Op_create((MPI_User_function*)
```
The code in question doesn't look correct, but we are not using the c++
wrappers anyways.
Marc Fehling [Mon, 6 Feb 2023 18:32:46 +0000 (11:32 -0700)]
Merge pull request #14756 from dealii/dependabot/github_actions/docker/build-push-action-4
Bump docker/build-push-action from 3 to 4
dependabot[bot] [Mon, 6 Feb 2023 02:24:41 +0000 (02:24 +0000)]
Bump docker/build-push-action from 3 to 4
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 3 to 4.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](https://github.com/docker/build-push-action/compare/v3...v4)
---
updated-dependencies:
- dependency-name: docker/build-push-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Timo Heister [Sun, 5 Feb 2023 22:21:28 +0000 (17:21 -0500)]
Merge pull request #14755 from Rombur/kokko_mpi
Add Kokkos::initialize and finalize to MPI_InitFinalize
Bruno Turcksin [Fri, 3 Feb 2023 15:03:54 +0000 (10:03 -0500)]
Add Kokkos::initalize and finalize to MPI_InitFinalize
Bruno Turcksin [Fri, 3 Feb 2023 14:58:55 +0000 (09:58 -0500)]
Remove Kokkos::initialize and finalize
Matthias Maier [Fri, 3 Feb 2023 16:03:25 +0000 (16:03 +0000)]
Merge pull request #14753 from masterleinad/kokkos_clean_up
Avoid __CUDA_ARCH__ in source code
Daniel Arndt [Thu, 2 Feb 2023 20:57:44 +0000 (15:57 -0500)]
Wrap Kokkos::abort
Daniel Arndt [Thu, 2 Feb 2023 15:50:39 +0000 (15:50 +0000)]
Fix nvcc
Daniel Arndt [Thu, 2 Feb 2023 13:16:39 +0000 (08:16 -0500)]
ifdef KOKKOS_VERSION -> if KOKKOS_VERSION
Marc Fehling [Thu, 2 Feb 2023 06:44:47 +0000 (23:44 -0700)]
Merge pull request #14752 from simonsticko/fix_missing_kokkos_header
Make sure all Kokkos headers are installed
Daniel Arndt [Thu, 2 Feb 2023 03:32:32 +0000 (22:32 -0500)]
Disable warnings in Kokkos headers
Wolfgang Bangerth [Thu, 2 Feb 2023 02:42:23 +0000 (19:42 -0700)]
Add a changelog entry.
Wolfgang Bangerth [Thu, 2 Feb 2023 02:38:18 +0000 (19:38 -0700)]
Fix the type used to initialize a DerivativeForm from a tensor.
Daniel Arndt [Wed, 1 Feb 2023 22:02:19 +0000 (17:02 -0500)]
Avoid __CUDA_ARCH__ in source code
Simon Sticko [Wed, 1 Feb 2023 18:30:24 +0000 (19:30 +0100)]
Make sure all Kokkos headers are installed
One of the Kokkos headers has a .h extension and not .hpp as the
others. Add *.h to the the pattern of headers we copy over when we
install the library.
Daniel Arndt [Wed, 1 Feb 2023 14:39:42 +0000 (09:39 -0500)]
Merge pull request #14726 from tamiko/silence_warnings
Daniel Arndt [Wed, 1 Feb 2023 14:38:07 +0000 (09:38 -0500)]
Merge pull request #14746 from bangerth/thread
Daniel Arndt [Wed, 1 Feb 2023 14:37:18 +0000 (09:37 -0500)]
Merge pull request #14744 from singima/kinsol_edits
Sean Ingimarson [Fri, 27 Jan 2023 17:45:20 +0000 (12:45 -0500)]
Some edits of the KINSol documentation.
David Wells [Tue, 31 Jan 2023 13:31:22 +0000 (08:31 -0500)]
Merge pull request #14747 from marcfehling/doc-setactivefe
Doc: Inform user how to exchange active FE indices on ghost cells.
Marc Fehling [Tue, 31 Jan 2023 05:54:50 +0000 (22:54 -0700)]
Doc: Inform user how to exchange active FE indices on ghost cells.
Wolfgang Bangerth [Tue, 31 Jan 2023 02:00:36 +0000 (19:00 -0700)]
Merge pull request #14745 from drwells/exodus-lines
Make the ExodusII reader work with line types.
David Wells [Mon, 30 Jan 2023 20:25:23 +0000 (15:25 -0500)]
Merge pull request #14740 from bangerth/doc-12
Better document CommunicationPatternBase and derived classes.
Wolfgang Bangerth [Mon, 30 Jan 2023 19:51:22 +0000 (12:51 -0700)]
Remove a BOOST src directory we don't use.
David Wells [Fri, 27 Jan 2023 22:28:09 +0000 (17:28 -0500)]
Make ExodusII work with line types.
This is useful for loading codim 1 and codim 2 meshes.
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