Align comments, add one description comment.

git-svn-id: https://svn.dealii.org/trunk@26066 0785d39b-7218-0410-832d-ea1e28bc413d

Add a comment.

git-svn-id: https://svn.dealii.org/trunk@26064 0785d39b-7218-0410-832d-ea1e28bc413d

Cleaning the code; some documentation

git-svn-id: https://svn.dealii.org/trunk@26059 0785d39b-7218-0410-832d-ea1e28bc413d

Fix a typo.

git-svn-id: https://svn.dealii.org/trunk@26058 0785d39b-7218-0410-832d-ea1e28bc413d

Encode the path to metis with -Wl,-rpath on the command line.

git-svn-id: https://svn.dealii.org/trunk@26057 0785d39b-7218-0410-832d-ea1e28bc413d

Avoid some cruft from PETSc 2.x times.

git-svn-id: https://svn.dealii.org/trunk@26056 0785d39b-7218-0410-832d-ea1e28bc413d

Fix paths to METIS when taking stuff from the environment.

git-svn-id: https://svn.dealii.org/trunk@26049 0785d39b-7218-0410-832d-ea1e28bc413d

Print some text when taking METIS from the envoronment.

git-svn-id: https://svn.dealii.org/trunk@26048 0785d39b-7218-0410-832d-ea1e28bc413d

Put Must Have Trillinos failsafe in Makefile.

git-svn-id: https://svn.dealii.org/trunk@26047 0785d39b-7218-0410-832d-ea1e28bc413d

Fix test for PETSc >= 3.2

git-svn-id: https://svn.dealii.org/trunk@26046 0785d39b-7218-0410-832d-ea1e28bc413d

Revert patch 25771 - norms are required by tests/petsc/full_matrix_0{5,6}.

git-svn-id: https://svn.dealii.org/trunk@26045 0785d39b-7218-0410-832d-ea1e28bc413d

Set properties.

git-svn-id: https://svn.dealii.org/trunk@26043 0785d39b-7218-0410-832d-ea1e28bc413d

Set properties.

git-svn-id: https://svn.dealii.org/trunk@26042 0785d39b-7218-0410-832d-ea1e28bc413d

Get rid of some piece of old code that isn't used any more according to Guido.

git-svn-id: https://svn.dealii.org/trunk@26041 0785d39b-7218-0410-832d-ea1e28bc413d

Fix KSPCHEBYSHEV for PETSc 3.3.

git-svn-id: https://svn.dealii.org/trunk@26040 0785d39b-7218-0410-832d-ea1e28bc413d

Update a couple of comments.

git-svn-id: https://svn.dealii.org/trunk@26038 0785d39b-7218-0410-832d-ea1e28bc413d

Fix katastrophic typo.

git-svn-id: https://svn.dealii.org/trunk@26037 0785d39b-7218-0410-832d-ea1e28bc413d

fix compiler warnings and renaming some classes and functions

git-svn-id: https://svn.dealii.org/trunk@26036 0785d39b-7218-0410-832d-ea1e28bc413d

formulation of the saddle point problem

git-svn-id: https://svn.dealii.org/trunk@26035 0785d39b-7218-0410-832d-ea1e28bc413d

Remove parts of BOOST that we don't use but that take incredibly long to parse in Eclipse.

git-svn-id: https://svn.dealii.org/trunk@26033 0785d39b-7218-0410-832d-ea1e28bc413d

Update.

git-svn-id: https://svn.dealii.org/trunk@26031 0785d39b-7218-0410-832d-ea1e28bc413d

Fix an error in the definition of b(.,.)

git-svn-id: https://svn.dealii.org/trunk@26030 0785d39b-7218-0410-832d-ea1e28bc413d

Third PETSc bundle removing support for PETSc < 3.x.x

git-svn-id: https://svn.dealii.org/trunk@26028 0785d39b-7218-0410-832d-ea1e28bc413d

Simplify. Remove configuration ifeq for PETSc < 3.x.x

git-svn-id: https://svn.dealii.org/trunk@26027 0785d39b-7218-0410-832d-ea1e28bc413d

Take -fast out of the flags when compiling C files with Clang because this flag is apparently not recognized.

git-svn-id: https://svn.dealii.org/trunk@26026 0785d39b-7218-0410-832d-ea1e28bc413d

Avoid a couple of warnings.

git-svn-id: https://svn.dealii.org/trunk@26020 0785d39b-7218-0410-832d-ea1e28bc413d

Set properties.

git-svn-id: https://svn.dealii.org/trunk@26017 0785d39b-7218-0410-832d-ea1e28bc413d

undo r26010

git-svn-id: https://svn.dealii.org/trunk@26014 0785d39b-7218-0410-832d-ea1e28bc413d

change debug check in trilinos vector and add comment

git-svn-id: https://svn.dealii.org/trunk@26010 0785d39b-7218-0410-832d-ea1e28bc413d

Silence MUMPS compiler warning.

git-svn-id: https://svn.dealii.org/trunk@26009 0785d39b-7218-0410-832d-ea1e28bc413d

Second piecewise removal support for PETSc < 3.x. Align comments.

git-svn-id: https://svn.dealii.org/trunk@26006 0785d39b-7218-0410-832d-ea1e28bc413d

First piecewise removal support for PETSc < 3.x.

git-svn-id: https://svn.dealii.org/trunk@26005 0785d39b-7218-0410-832d-ea1e28bc413d

avoid that library functions are replaced instead of creating a brand new library

git-svn-id: https://svn.dealii.org/trunk@26004 0785d39b-7218-0410-832d-ea1e28bc413d

Add accepted publication.

git-svn-id: https://svn.dealii.org/trunk@26002 0785d39b-7218-0410-832d-ea1e28bc413d

changing the reference for saddle point problem; fixed bug in E(u)

git-svn-id: https://svn.dealii.org/trunk@26001 0785d39b-7218-0410-832d-ea1e28bc413d

improve documentation and remove doxygen warnings

git-svn-id: https://svn.dealii.org/trunk@25999 0785d39b-7218-0410-832d-ea1e28bc413d

provide a reference output for comparison

git-svn-id: https://svn.dealii.org/trunk@25998 0785d39b-7218-0410-832d-ea1e28bc413d

Kill configure support for PETSc < 3.0 and update the readmes.

git-svn-id: https://svn.dealii.org/trunk@25997 0785d39b-7218-0410-832d-ea1e28bc413d

merge: unify compress() for linear algebra objects

git-svn-id: https://svn.dealii.org/trunk@25986 0785d39b-7218-0410-832d-ea1e28bc413d

DoFRenumbering::sort_selected_dofs_back(..) on each level for mg
implemented

git-svn-id: https://svn.dealii.org/trunk@25982 0785d39b-7218-0410-832d-ea1e28bc413d

Wrapper to the MUMPS interface of PETSc by Dan Brauss.

git-svn-id: https://svn.dealii.org/trunk@25967 0785d39b-7218-0410-832d-ea1e28bc413d

Let copy constructor from IdentityMatrix to FullMatrix not be explicit any more. There doesn't appear to be a compelling reason for this.

git-svn-id: https://svn.dealii.org/trunk@25961 0785d39b-7218-0410-832d-ea1e28bc413d

Reintroduced dynamic cast bug for 10.8

git-svn-id: https://svn.dealii.org/trunk@25959 0785d39b-7218-0410-832d-ea1e28bc413d

Put minimal information about METIS

git-svn-id: https://svn.dealii.org/trunk@25957 0785d39b-7218-0410-832d-ea1e28bc413d

Fixed OSX Mountain Lion configure bug.

git-svn-id: https://svn.dealii.org/trunk@25948 0785d39b-7218-0410-832d-ea1e28bc413d

Remove the silly typename again...

git-svn-id: https://svn.dealii.org/trunk@25946 0785d39b-7218-0410-832d-ea1e28bc413d

... and web page

git-svn-id: https://svn.dealii.org/trunk@25944 0785d39b-7218-0410-832d-ea1e28bc413d

Affiliation change

git-svn-id: https://svn.dealii.org/trunk@25943 0785d39b-7218-0410-832d-ea1e28bc413d

Put in a missing header change.

git-svn-id: https://svn.dealii.org/trunk@25935 0785d39b-7218-0410-832d-ea1e28bc413d

Actually change the code that handles Metis functions.

git-svn-id: https://svn.dealii.org/trunk@25934 0785d39b-7218-0410-832d-ea1e28bc413d

Work in configuration for Metis 5.x

git-svn-id: https://svn.dealii.org/trunk@25933 0785d39b-7218-0410-832d-ea1e28bc413d

Make METIS configure output more verbose

git-svn-id: https://svn.dealii.org/trunk@25932 0785d39b-7218-0410-832d-ea1e28bc413d

Fix typo.

git-svn-id: https://svn.dealii.org/trunk@25927 0785d39b-7218-0410-832d-ea1e28bc413d

Several more tests.

git-svn-id: https://svn.dealii.org/trunk@25926 0785d39b-7218-0410-832d-ea1e28bc413d

Fix typo.

git-svn-id: https://svn.dealii.org/trunk@25925 0785d39b-7218-0410-832d-ea1e28bc413d

Several new tests.

git-svn-id: https://svn.dealii.org/trunk@25924 0785d39b-7218-0410-832d-ea1e28bc413d

Augment documentation.

git-svn-id: https://svn.dealii.org/trunk@25923 0785d39b-7218-0410-832d-ea1e28bc413d

Fix typo.

git-svn-id: https://svn.dealii.org/trunk@25922 0785d39b-7218-0410-832d-ea1e28bc413d

Add some documentation.

git-svn-id: https://svn.dealii.org/trunk@25921 0785d39b-7218-0410-832d-ea1e28bc413d

Add a presumably missing 'typename'.

git-svn-id: https://svn.dealii.org/trunk@25920 0785d39b-7218-0410-832d-ea1e28bc413d

One more test.

git-svn-id: https://svn.dealii.org/trunk@25919 0785d39b-7218-0410-832d-ea1e28bc413d

cleanup test output

git-svn-id: https://svn.dealii.org/trunk@25917 0785d39b-7218-0410-832d-ea1e28bc413d

Add some comments.

git-svn-id: https://svn.dealii.org/trunk@25901 0785d39b-7218-0410-832d-ea1e28bc413d

Add a reference to the glossary.

git-svn-id: https://svn.dealii.org/trunk@25899 0785d39b-7218-0410-832d-ea1e28bc413d

Replace by less offensive latex

git-svn-id: https://svn.dealii.org/trunk@25877 0785d39b-7218-0410-832d-ea1e28bc413d

Minor edit.

git-svn-id: https://svn.dealii.org/trunk@25876 0785d39b-7218-0410-832d-ea1e28bc413d

Fix link.

git-svn-id: https://svn.dealii.org/trunk@25866 0785d39b-7218-0410-832d-ea1e28bc413d

Part II of: Convert a bunch of bare 'unsigned's into 'unsigned int's to make the replacement by types::global_dof_index simpler.

git-svn-id: https://svn.dealii.org/trunk@25862 0785d39b-7218-0410-832d-ea1e28bc413d

Convert matrices.h and vectors.h into matrix_tools.h/vector_tools.h.

git-svn-id: https://svn.dealii.org/trunk@25861 0785d39b-7218-0410-832d-ea1e28bc413d

Indentation fixes.

git-svn-id: https://svn.dealii.org/trunk@25860 0785d39b-7218-0410-832d-ea1e28bc413d

Convert a bunch of bare 'unsigned's into 'unsigned int's to make the replacement by types::global_dof_index simpler.

git-svn-id: https://svn.dealii.org/trunk@25859 0785d39b-7218-0410-832d-ea1e28bc413d

add missing files

git-svn-id: https://svn.dealii.org/trunk@25856 0785d39b-7218-0410-832d-ea1e28bc413d

Convert an input argument with default value into a const reference.

git-svn-id: https://svn.dealii.org/trunk@25852 0785d39b-7218-0410-832d-ea1e28bc413d

Use the now correct name for a header file.

git-svn-id: https://svn.dealii.org/trunk@25850 0785d39b-7218-0410-832d-ea1e28bc413d

Fix up include files to new format.

git-svn-id: https://svn.dealii.org/trunk@25840 0785d39b-7218-0410-832d-ea1e28bc413d

Add an endline at the end of the file...

git-svn-id: https://svn.dealii.org/trunk@25839 0785d39b-7218-0410-832d-ea1e28bc413d

improve intro

git-svn-id: https://svn.dealii.org/trunk@25835 0785d39b-7218-0410-832d-ea1e28bc413d

doc

git-svn-id: https://svn.dealii.org/trunk@25834 0785d39b-7218-0410-832d-ea1e28bc413d

more tests

git-svn-id: https://svn.dealii.org/trunk@25833 0785d39b-7218-0410-832d-ea1e28bc413d

Add residuals

git-svn-id: https://svn.dealii.org/trunk@25832 0785d39b-7218-0410-832d-ea1e28bc413d

use new include files matrix_tools.h and vector_tools.h

git-svn-id: https://svn.dealii.org/trunk@25831 0785d39b-7218-0410-832d-ea1e28bc413d

Fix input file

git-svn-id: https://svn.dealii.org/trunk@25825 0785d39b-7218-0410-832d-ea1e28bc413d

Fix input file

git-svn-id: https://svn.dealii.org/trunk@25824 0785d39b-7218-0410-832d-ea1e28bc413d

Fix input files

git-svn-id: https://svn.dealii.org/trunk@25823 0785d39b-7218-0410-832d-ea1e28bc413d

Fix input file

git-svn-id: https://svn.dealii.org/trunk@25822 0785d39b-7218-0410-832d-ea1e28bc413d

also rename matrices.* to matrix_tools.*

git-svn-id: https://svn.dealii.org/trunk@25821 0785d39b-7218-0410-832d-ea1e28bc413d

decribtion of the active set method

git-svn-id: https://svn.dealii.org/trunk@25820 0785d39b-7218-0410-832d-ea1e28bc413d

keywords

git-svn-id: https://svn.dealii.org/trunk@25818 0785d39b-7218-0410-832d-ea1e28bc413d

first version of diergence tests

git-svn-id: https://svn.dealii.org/trunk@25810 0785d39b-7218-0410-832d-ea1e28bc413d

additional error check in Trilinos SparseMatrix in debug mode

git-svn-id: https://svn.dealii.org/trunk@25809 0785d39b-7218-0410-832d-ea1e28bc413d

typo in comment

git-svn-id: https://svn.dealii.org/trunk@25808 0785d39b-7218-0410-832d-ea1e28bc413d

Thomas Carraro's publications.

git-svn-id: https://svn.dealii.org/trunk@25807 0785d39b-7218-0410-832d-ea1e28bc413d

rename vectors to vector_tools

git-svn-id: https://svn.dealii.org/trunk@25806 0785d39b-7218-0410-832d-ea1e28bc413d

Fix markup problem.

git-svn-id: https://svn.dealii.org/trunk@25805 0785d39b-7218-0410-832d-ea1e28bc413d

move mpi namespace from trilinos_block_vector.h into new trilinos_parallel_block_vector.h

git-svn-id: https://svn.dealii.org/trunk@25802 0785d39b-7218-0410-832d-ea1e28bc413d

Fix typo.

git-svn-id: https://svn.dealii.org/trunk@25793 0785d39b-7218-0410-832d-ea1e28bc413d

Fix a typo.

git-svn-id: https://svn.dealii.org/trunk@25792 0785d39b-7218-0410-832d-ea1e28bc413d

Update.

git-svn-id: https://svn.dealii.org/trunk@25782 0785d39b-7218-0410-832d-ea1e28bc413d

add ip residuals

git-svn-id: https://svn.dealii.org/trunk@25781 0785d39b-7218-0410-832d-ea1e28bc413d

ip residuals

git-svn-id: https://svn.dealii.org/trunk@25780 0785d39b-7218-0410-832d-ea1e28bc413d