https://gitweb.dealii.org/

Joerg Frohne [Sat, 28 Sep 2013 23:20:10 +0000 (23:20 +0000)]

fix sphere obstacle function

git-svn-id: https://svn.dealii.org/trunk@31009 0785d39b-7218-0410-832d-ea1e28bc413d

Wolfgang Bangerth [Sat, 28 Sep 2013 21:55:29 +0000 (21:55 +0000)]

Add a newline to the end of the file, as mandated by the C++ standard.

git-svn-id: https://svn.dealii.org/trunk@31006 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 28 Sep 2013 21:55:12 +0000 (21:55 +0000)]

Add a newline to the end of the file, as mandated by the C++ standard.

git-svn-id: https://svn.dealii.org/trunk@31005 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 28 Sep 2013 21:42:33 +0000 (21:42 +0000)]

Make compile with 64-bit.

git-svn-id: https://svn.dealii.org/trunk@31003 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 28 Sep 2013 11:59:19 +0000 (11:59 +0000)]

More minor changes.

git-svn-id: https://svn.dealii.org/trunk@30999 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 28 Sep 2013 11:40:39 +0000 (11:40 +0000)]

Slightly more cleanup.

git-svn-id: https://svn.dealii.org/trunk@30998 0785d39b-7218-0410-832d-ea1e28bc413d

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Eric Heien [Fri, 27 Sep 2013 23:48:07 +0000 (23:48 +0000)]

Added DataOutFilter class to remove duplicate vertices/values and serialization for XDMFEntry class

git-svn-id: https://svn.dealii.org/trunk@30991 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 20:57:56 +0000 (20:57 +0000)]

Reindent.

git-svn-id: https://svn.dealii.org/trunk@30990 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 20:56:43 +0000 (20:56 +0000)]

Rename a couple of things.

git-svn-id: https://svn.dealii.org/trunk@30989 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 20:54:58 +0000 (20:54 +0000)]

Update.

git-svn-id: https://svn.dealii.org/trunk@30988 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 20:49:39 +0000 (20:49 +0000)]

Move around a bit of stuff. More documentation.

git-svn-id: https://svn.dealii.org/trunk@30987 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 13:10:22 +0000 (13:10 +0000)]

Move initialization of obstacle into constructor of main class.

git-svn-id: https://svn.dealii.org/trunk@30984 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 13:04:43 +0000 (13:04 +0000)]

Let the main class only store a pointer to the obstacle, not the object that reads in the file.

git-svn-id: https://svn.dealii.org/trunk@30981 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 13:02:54 +0000 (13:02 +0000)]

add

git-svn-id: https://svn.dealii.org/trunk@30980 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Fri, 27 Sep 2013 12:49:42 +0000 (12:49 +0000)]

CMake: Bugfix - nice try...

git-svn-id: https://svn.dealii.org/trunk@30978 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 27 Sep 2013 12:48:12 +0000 (12:48 +0000)]

fix crash in ConstraintMatrix constructor taking IndexSet (release mode only)

git-svn-id: https://svn.dealii.org/trunk@30977 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Fri, 27 Sep 2013 12:43:26 +0000 (12:43 +0000)]

CMake: Bugfix: Also include 3rd party include directories in FindPETSC.conf

It is really necessary to use all exported include directories from a PETSc
installation.

git-svn-id: https://svn.dealii.org/trunk@30975 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 12:34:23 +0000 (12:34 +0000)]

Avoid infinite loop.

git-svn-id: https://svn.dealii.org/trunk@30973 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 27 Sep 2013 12:21:55 +0000 (12:21 +0000)]

Make compile again.

git-svn-id: https://svn.dealii.org/trunk@30972 0785d39b-7218-0410-832d-ea1e28bc413d

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Joerg Frohne [Thu, 26 Sep 2013 21:39:35 +0000 (21:39 +0000)]

small change in update_solution_and_constraints

git-svn-id: https://svn.dealii.org/trunk@30971 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Thu, 26 Sep 2013 20:37:50 +0000 (20:37 +0000)]

Use std_cxx1x::function for graph_coloring.

git-svn-id: https://svn.dealii.org/trunk@30970 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 26 Sep 2013 18:42:50 +0000 (18:42 +0000)]

fix elasticity test

git-svn-id: https://svn.dealii.org/trunk@30964 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 26 Sep 2013 18:42:28 +0000 (18:42 +0000)]

new residual Divergence::u_times_n\
fixed elasticity residuals

git-svn-id: https://svn.dealii.org/trunk@30963 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 26 Sep 2013 15:49:18 +0000 (15:49 +0000)]

fix typo

git-svn-id: https://svn.dealii.org/trunk@30961 0785d39b-7218-0410-832d-ea1e28bc413d

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Joerg Frohne [Thu, 26 Sep 2013 15:26:10 +0000 (15:26 +0000)]

splitting obstacle class into two classes

git-svn-id: https://svn.dealii.org/trunk@30959 0785d39b-7218-0410-832d-ea1e28bc413d

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Felix Gruber [Thu, 26 Sep 2013 12:24:50 +0000 (12:24 +0000)]

doc/users: fix some broken links

git-svn-id: https://svn.dealii.org/trunk@30950 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Thu, 26 Sep 2013 09:28:52 +0000 (09:28 +0000)]

Fix a lot of links

git-svn-id: https://svn.dealii.org/trunk@30945 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Thu, 26 Sep 2013 09:18:00 +0000 (09:18 +0000)]

Add a second link for the reports

git-svn-id: https://svn.dealii.org/trunk@30944 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Thu, 26 Sep 2013 09:15:15 +0000 (09:15 +0000)]

Fix typos

git-svn-id: https://svn.dealii.org/trunk@30943 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 26 Sep 2013 08:58:02 +0000 (08:58 +0000)]

advection residuals fixed

git-svn-id: https://svn.dealii.org/trunk@30942 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 26 Sep 2013 08:19:33 +0000 (08:19 +0000)]

weak residuals

git-svn-id: https://svn.dealii.org/trunk@30941 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 26 Sep 2013 01:22:38 +0000 (01:22 +0000)]

Fix name of type...

git-svn-id: https://svn.dealii.org/trunk@30939 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 25 Sep 2013 22:49:59 +0000 (22:49 +0000)]

Use types::global_dof_indices.

git-svn-id: https://svn.dealii.org/trunk@30931 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 25 Sep 2013 22:48:53 +0000 (22:48 +0000)]

Use types::global_dof_indices.

git-svn-id: https://svn.dealii.org/trunk@30930 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Wed, 25 Sep 2013 22:33:26 +0000 (22:33 +0000)]

The big documentation overhaul

git-svn-id: https://svn.dealii.org/trunk@30929 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Wed, 25 Sep 2013 20:30:34 +0000 (20:30 +0000)]

Finish documentation

git-svn-id: https://svn.dealii.org/trunk@30925 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Wed, 25 Sep 2013 17:28:47 +0000 (17:28 +0000)]

Fix a bug in work_stream when using graph_coloring.

git-svn-id: https://svn.dealii.org/trunk@30922 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Wed, 25 Sep 2013 16:12:27 +0000 (16:12 +0000)]

Use graph coloring whith work_stream.

git-svn-id: https://svn.dealii.org/trunk@30921 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 25 Sep 2013 14:57:51 +0000 (14:57 +0000)]

Add note about yesterday's change to PETSc wrappers.

git-svn-id: https://svn.dealii.org/trunk@30920 0785d39b-7218-0410-832d-ea1e28bc413d

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Scott Miller [Wed, 25 Sep 2013 12:44:32 +0000 (12:44 +0000)]

Fix typo in documentation.

git-svn-id: https://svn.dealii.org/trunk@30919 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 24 Sep 2013 18:25:07 +0000 (18:25 +0000)]

Avoid outputting 'number-number' since ./normalize might turn that into numbernumber if the second number just so happens to be zero -- and then consequently completely confuse numdiff.

git-svn-id: https://svn.dealii.org/trunk@30917 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 24 Sep 2013 18:12:47 +0000 (18:12 +0000)]

Work around a change in PETSc 3.4.

git-svn-id: https://svn.dealii.org/trunk@30916 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Tue, 24 Sep 2013 16:12:47 +0000 (16:12 +0000)]

instantiate selectors for const vectors

git-svn-id: https://svn.dealii.org/trunk@30915 0785d39b-7218-0410-832d-ea1e28bc413d

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Daniel Arndt [Tue, 24 Sep 2013 14:37:29 +0000 (14:37 +0000)]

Fixed bug in add_periodicity. There were errors when the mesh is not immediately refined.

git-svn-id: https://svn.dealii.org/trunk@30914 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Tue, 24 Sep 2013 09:04:36 +0000 (09:04 +0000)]

add homogeneous boundary operator

git-svn-id: https://svn.dealii.org/trunk@30907 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 24 Sep 2013 00:35:14 +0000 (00:35 +0000)]

More work.

git-svn-id: https://svn.dealii.org/trunk@30903 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 23 Sep 2013 23:56:21 +0000 (23:56 +0000)]

Some more work.

git-svn-id: https://svn.dealii.org/trunk@30902 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 23 Sep 2013 21:15:23 +0000 (21:15 +0000)]

More small rewrites.

git-svn-id: https://svn.dealii.org/trunk@30901 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 23 Sep 2013 16:11:26 +0000 (16:11 +0000)]

Resize picture.

git-svn-id: https://svn.dealii.org/trunk@30900 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 23 Sep 2013 15:58:51 +0000 (15:58 +0000)]

Use pictures from the central repository.

git-svn-id: https://svn.dealii.org/trunk@30898 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 23 Sep 2013 15:58:27 +0000 (15:58 +0000)]

More editing. Return some values rather than having functions have several output arguments.

git-svn-id: https://svn.dealii.org/trunk@30897 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 23 Sep 2013 15:48:30 +0000 (15:48 +0000)]

Remove the original tex version of the introduction.

git-svn-id: https://svn.dealii.org/trunk@30896 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Mon, 23 Sep 2013 15:23:24 +0000 (15:23 +0000)]

Remove the out-of-source check from DEAL_II_INVOKE_AUTOPILOT

git-svn-id: https://svn.dealii.org/trunk@30895 0785d39b-7218-0410-832d-ea1e28bc413d

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Scott Miller [Mon, 23 Sep 2013 14:02:09 +0000 (14:02 +0000)]

Fix typos and set diffusion in step-51.

git-svn-id: https://svn.dealii.org/trunk@30894 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 23 Sep 2013 13:41:10 +0000 (13:41 +0000)]

Use standard indentation scheme.

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Wolfgang Bangerth [Mon, 23 Sep 2013 13:39:34 +0000 (13:39 +0000)]

Minor edits.

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Wolfgang Bangerth [Mon, 23 Sep 2013 13:39:18 +0000 (13:39 +0000)]

Rename images to standard naming scheme. Add the image that describes the obstacle.

git-svn-id: https://svn.dealii.org/trunk@30891 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 23 Sep 2013 03:18:31 +0000 (03:18 +0000)]

Work on the introduction.

git-svn-id: https://svn.dealii.org/trunk@30890 0785d39b-7218-0410-832d-ea1e28bc413d

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Fahad Alrashed [Sat, 21 Sep 2013 16:23:32 +0000 (16:23 +0000)]

modified dealii/data_out.cc to test both write_visit_record functions

git-svn-id: https://svn.dealii.org/trunk@30888 0785d39b-7218-0410-832d-ea1e28bc413d

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Fahad Alrashed [Sat, 21 Sep 2013 16:05:02 +0000 (16:05 +0000)]

forgot to add a new entry in changes.h

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Fahad Alrashed [Sat, 21 Sep 2013 15:52:05 +0000 (15:52 +0000)]

added write_visit_record that allows for multiple blocks and more than one time step

git-svn-id: https://svn.dealii.org/trunk@30886 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 21 Sep 2013 12:29:40 +0000 (12:29 +0000)]

Fix grammar of message.

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Wolfgang Bangerth [Sat, 21 Sep 2013 12:03:54 +0000 (12:03 +0000)]

Minor markup improvements.

git-svn-id: https://svn.dealii.org/trunk@30884 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 21 Sep 2013 12:03:40 +0000 (12:03 +0000)]

Fix leftover note.

git-svn-id: https://svn.dealii.org/trunk@30883 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 20 Sep 2013 23:12:29 +0000 (23:12 +0000)]

Fix two tests.

git-svn-id: https://svn.dealii.org/trunk@30878 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 20 Sep 2013 23:00:53 +0000 (23:00 +0000)]

Add an instantiation that was previous missing in optimized mode.

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Wolfgang Bangerth [Fri, 20 Sep 2013 22:21:54 +0000 (22:21 +0000)]

Fix typo.

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Wolfgang Bangerth [Fri, 20 Sep 2013 13:06:08 +0000 (13:06 +0000)]

Add two.

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Bruno Turcksin [Thu, 19 Sep 2013 20:39:37 +0000 (20:39 +0000)]

Change graph_coloring to accept an user-defined function to get the conflict_indices.

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Timo Heister [Thu, 19 Sep 2013 18:30:26 +0000 (18:30 +0000)]

fix test

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Daniel Arndt [Thu, 19 Sep 2013 16:45:08 +0000 (16:45 +0000)]

Added new tests for collect_periodic_face_pairs

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Daniel Arndt [Thu, 19 Sep 2013 16:33:50 +0000 (16:33 +0000)]

Added tests for collect_periodic_face_pairs and unified code in make_periodicity_constraints

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Timo Heister [Thu, 19 Sep 2013 14:58:19 +0000 (14:58 +0000)]

add hdf5 test

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Timo Heister [Thu, 19 Sep 2013 14:54:21 +0000 (14:54 +0000)]

tests: move cat_file to other header

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Wolfgang Bangerth [Thu, 19 Sep 2013 14:32:13 +0000 (14:32 +0000)]

Document the exception that is being thrown.

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Scott Miller [Thu, 19 Sep 2013 02:00:54 +0000 (02:00 +0000)]

Step-51 documentation fixes.

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Eric Heien [Wed, 18 Sep 2013 21:31:52 +0000 (21:31 +0000)]

Fixed HDF5 multiprocessor bug

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Bruno Turcksin [Wed, 18 Sep 2013 21:09:09 +0000 (21:09 +0000)]

Add test for graph_coloring.

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Timo Heister [Wed, 18 Sep 2013 16:36:56 +0000 (16:36 +0000)]

add test

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Timo Heister [Wed, 18 Sep 2013 16:36:32 +0000 (16:36 +0000)]

find_active_cell_around_point now throws the exception ExcPointNotFound

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Timo Heister [Wed, 18 Sep 2013 15:39:17 +0000 (15:39 +0000)]

disable checking MPI_init_thread return value because some implementations always return _SINGLE.

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Daniel Arndt [Wed, 18 Sep 2013 15:24:34 +0000 (15:24 +0000)]

Fixed add_periodity

git-svn-id: https://svn.dealii.org/trunk@30798 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Wed, 18 Sep 2013 15:22:33 +0000 (15:22 +0000)]

Add a test for graph_coloring.

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Martin Kronbichler [Wed, 18 Sep 2013 14:48:18 +0000 (14:48 +0000)]

Explain integrals

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Scott Miller [Wed, 18 Sep 2013 14:28:19 +0000 (14:28 +0000)]

Step-51 documentation updates.

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Timo Heister [Wed, 18 Sep 2013 14:00:08 +0000 (14:00 +0000)]

update ignores

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Timo Heister [Wed, 18 Sep 2013 13:31:23 +0000 (13:31 +0000)]

fix asserttion in test

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Timo Heister [Wed, 18 Sep 2013 13:16:32 +0000 (13:16 +0000)]

fix r30770

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Martin Kronbichler [Wed, 18 Sep 2013 12:10:58 +0000 (12:10 +0000)]

Went through the complete tutorial and made the presentation consistent.

git-svn-id: https://svn.dealii.org/trunk@30785 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Wed, 18 Sep 2013 07:07:32 +0000 (07:07 +0000)]

Improve documentation of positive entries for constrained entries.

git-svn-id: https://svn.dealii.org/trunk@30784 0785d39b-7218-0410-832d-ea1e28bc413d

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Scott Miller [Wed, 18 Sep 2013 02:20:23 +0000 (02:20 +0000)]

Fix typos in documentation.

git-svn-id: https://svn.dealii.org/trunk@30783 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Tue, 17 Sep 2013 23:23:55 +0000 (23:23 +0000)]

Start graph coloring abilities for work_stream.

git-svn-id: https://svn.dealii.org/trunk@30781 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Tue, 17 Sep 2013 19:55:00 +0000 (19:55 +0000)]

Write section on results with solution pictures and convergence graphs. Now we only need to upload the images

git-svn-id: https://svn.dealii.org/trunk@30779 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Tue, 17 Sep 2013 18:49:23 +0000 (18:49 +0000)]

replace mpi_init by mpi_init_thread

git-svn-id: https://svn.dealii.org/trunk@30770 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Tue, 17 Sep 2013 14:38:55 +0000 (14:38 +0000)]

More comments. One more test

git-svn-id: https://svn.dealii.org/trunk@30766 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Tue, 17 Sep 2013 14:24:00 +0000 (14:24 +0000)]

Fix subface interpolation.

git-svn-id: https://svn.dealii.org/trunk@30765 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Tue, 17 Sep 2013 13:29:50 +0000 (13:29 +0000)]

Fix a few issues. Still not correct.

git-svn-id: https://svn.dealii.org/trunk@30763 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 17 Sep 2013 12:08:04 +0000 (12:08 +0000)]

Help non-C++11 compilers.

git-svn-id: https://svn.dealii.org/trunk@30761 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Tue, 17 Sep 2013 11:26:58 +0000 (11:26 +0000)]

First step towards implementing FE_FaceP in analogy to FE_FaceQ. Cleanup some code.

git-svn-id: https://svn.dealii.org/trunk@30760 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Tue, 17 Sep 2013 08:03:18 +0000 (08:03 +0000)]

Fix list

git-svn-id: https://svn.dealii.org/trunk@30756 0785d39b-7218-0410-832d-ea1e28bc413d

Mirror of the development repository for deal.II

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