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https://gitweb.dealii.org/ - dealii-svn.git/log
turcksin [Mon, 3 Feb 2014 15:24:56 +0000 (15:24 +0000)]
Merge from trunk.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@32390
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bangerth [Mon, 3 Feb 2014 14:58:05 +0000 (14:58 +0000)]
Avoid what I believe is an unnecessary '::template ' in hopes that it makes MS VC++ happier.
git-svn-id: https://svn.dealii.org/trunk@32389
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heister [Mon, 3 Feb 2014 14:50:28 +0000 (14:50 +0000)]
formatting
git-svn-id: https://svn.dealii.org/trunk@32388
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heister [Mon, 3 Feb 2014 14:49:44 +0000 (14:49 +0000)]
add publication
git-svn-id: https://svn.dealii.org/trunk@32387
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kronbichler [Mon, 3 Feb 2014 14:41:54 +0000 (14:41 +0000)]
Refill comments
git-svn-id: https://svn.dealii.org/trunk@32386
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kronbichler [Mon, 3 Feb 2014 14:32:10 +0000 (14:32 +0000)]
Introduce mmult and second factorization routine.
git-svn-id: https://svn.dealii.org/trunk@32385
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bangerth [Mon, 3 Feb 2014 14:24:09 +0000 (14:24 +0000)]
DataOutBase no longer is a class.
git-svn-id: https://svn.dealii.org/trunk@32384
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kanschat [Sun, 2 Feb 2014 22:41:39 +0000 (22:41 +0000)]
add weighted mass matrix
git-svn-id: https://svn.dealii.org/trunk@32381
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kanschat [Sun, 2 Feb 2014 22:41:20 +0000 (22:41 +0000)]
add functions for clearing and initializing an MGTransferPrebuilt object
git-svn-id: https://svn.dealii.org/trunk@32380
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kanschat [Sun, 2 Feb 2014 22:40:45 +0000 (22:40 +0000)]
Newton::threshold() was missing
git-svn-id: https://svn.dealii.org/trunk@32379
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bangerth [Sun, 2 Feb 2014 21:53:39 +0000 (21:53 +0000)]
Help MS VC++ recognize which template function to take.
git-svn-id: https://svn.dealii.org/trunk@32378
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bangerth [Sun, 2 Feb 2014 20:53:38 +0000 (20:53 +0000)]
Complete specify namespace for a symbol to help MS VC++.
git-svn-id: https://svn.dealii.org/trunk@32377
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bangerth [Sun, 2 Feb 2014 19:37:02 +0000 (19:37 +0000)]
Address a few follow-up issues with the previous patches.
git-svn-id: https://svn.dealii.org/trunk@32376
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bangerth [Sun, 2 Feb 2014 19:05:08 +0000 (19:05 +0000)]
More conversions from class to namespace DataOutBase. Reindent these files.
git-svn-id: https://svn.dealii.org/trunk@32375
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maier [Sun, 2 Feb 2014 11:39:36 +0000 (11:39 +0000)]
Bugfixes: Make compilation of bundled libraries work again
git-svn-id: https://svn.dealii.org/trunk@32374
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maier [Sun, 2 Feb 2014 00:31:01 +0000 (00:31 +0000)]
I have no idea where this cache invalidation comes from - disable for now
git-svn-id: https://svn.dealii.org/trunk@32373
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maier [Sun, 2 Feb 2014 00:10:11 +0000 (00:10 +0000)]
CMake: Bugfix: Get the caching right in FindPETSC.cmake and
FindTRILINOS.cmake
git-svn-id: https://svn.dealii.org/trunk@32372
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maier [Sat, 1 Feb 2014 21:58:11 +0000 (21:58 +0000)]
Well, well. Also adjust the project configuration...
git-svn-id: https://svn.dealii.org/trunk@32371
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maier [Sat, 1 Feb 2014 21:53:31 +0000 (21:53 +0000)]
CMake: Break everything (tm)
- Provide a quick sanity check to test the final link interface.
git-svn-id: https://svn.dealii.org/trunk@32370
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maier [Sat, 1 Feb 2014 21:53:29 +0000 (21:53 +0000)]
CMake: Break everything (tm)
- Do not record full path of system libraries and use reduced link line
instead.
git-svn-id: https://svn.dealii.org/trunk@32369
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maier [Sat, 1 Feb 2014 21:53:24 +0000 (21:53 +0000)]
CMake: Break everything (tm).
- Redesign complete feature configuration process
git-svn-id: https://svn.dealii.org/trunk@32368
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bangerth [Sat, 1 Feb 2014 13:18:44 +0000 (13:18 +0000)]
Remove the awkward private inheritance from DataOutBase to DataOutInterface that has tripped up virtually every compiler we have ever tried. Instead, make DataOutBase a namespace.
git-svn-id: https://svn.dealii.org/trunk@32367
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kronbichler [Sat, 1 Feb 2014 08:16:52 +0000 (08:16 +0000)]
Mark new functions in header file as inline
git-svn-id: https://svn.dealii.org/trunk@32365
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steigemann [Sat, 1 Feb 2014 08:04:39 +0000 (08:04 +0000)]
new tests for ParameterHandler print_parameters_section
git-svn-id: https://svn.dealii.org/trunk@32364
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steigemann [Sat, 1 Feb 2014 07:57:30 +0000 (07:57 +0000)]
added a new flag to ParameterHandler::print_parameters_section for printing all higher subsection elements needed for XML output
git-svn-id: https://svn.dealii.org/trunk@32363
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kronbichler [Fri, 31 Jan 2014 20:07:22 +0000 (20:07 +0000)]
Make compile again
git-svn-id: https://svn.dealii.org/trunk@32362
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kronbichler [Fri, 31 Jan 2014 20:03:54 +0000 (20:03 +0000)]
Add tests
git-svn-id: https://svn.dealii.org/trunk@32361
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bangerth [Fri, 31 Jan 2014 19:44:13 +0000 (19:44 +0000)]
Make all instances of a template a friend function, in hopes to make
MS VC++ happy.
git-svn-id: https://svn.dealii.org/trunk@32360
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kronbichler [Fri, 31 Jan 2014 19:05:03 +0000 (19:05 +0000)]
Better way for specifying deal.II namespace.
git-svn-id: https://svn.dealii.org/trunk@32359
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kronbichler [Fri, 31 Jan 2014 19:03:37 +0000 (19:03 +0000)]
Add similar interface for copying from a Trilinos MPI vector as for Petsc.
git-svn-id: https://svn.dealii.org/trunk@32358
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kronbichler [Fri, 31 Jan 2014 14:11:14 +0000 (14:11 +0000)]
Add test
git-svn-id: https://svn.dealii.org/trunk@32357
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heister [Fri, 31 Jan 2014 14:05:39 +0000 (14:05 +0000)]
avoid fmin with unsigned int because it is not defined for ints before c++11
git-svn-id: https://svn.dealii.org/trunk@32356
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kronbichler [Fri, 31 Jan 2014 13:24:30 +0000 (13:24 +0000)]
Patch by Ben Thompson: copy petsc vector to deal.II parallel distributed vector
git-svn-id: https://svn.dealii.org/trunk@32355
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kronbichler [Fri, 31 Jan 2014 07:33:59 +0000 (07:33 +0000)]
Prior to C++11, fmax is a C99 function and not in namespace std
git-svn-id: https://svn.dealii.org/trunk@32354
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kronbichler [Fri, 31 Jan 2014 07:20:16 +0000 (07:20 +0000)]
Prior to C++11, fmin is a C99 function and not in namespace std
git-svn-id: https://svn.dealii.org/trunk@32353
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bangerth [Fri, 31 Jan 2014 03:34:47 +0000 (03:34 +0000)]
Add tests for bug report #182. At least the _28 test doesn't currently work and I will get to it over the weekend at the latest.
git-svn-id: https://svn.dealii.org/trunk@32352
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turcksin [Fri, 31 Jan 2014 01:32:15 +0000 (01:32 +0000)]
Add a const in sparse_matrix.h and an include in sparsity_tools.cc to help Visual Studio.
git-svn-id: https://svn.dealii.org/trunk@32351
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turcksin [Fri, 31 Jan 2014 00:04:32 +0000 (00:04 +0000)]
Add several typenames and change min to fmin, max to fmax to help Visual Studio.
git-svn-id: https://svn.dealii.org/trunk@32350
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bangerth [Thu, 30 Jan 2014 23:08:09 +0000 (23:08 +0000)]
Look through the documentation at a couple of places.
git-svn-id: https://svn.dealii.org/trunk@32349
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bangerth [Thu, 30 Jan 2014 21:53:29 +0000 (21:53 +0000)]
Link to another paper on best practices, as well as the video lectures.
git-svn-id: https://svn.dealii.org/trunk@32348
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bangerth [Thu, 30 Jan 2014 17:23:49 +0000 (17:23 +0000)]
Add a few statements on running stuff in parallel with MPI.
git-svn-id: https://svn.dealii.org/trunk@32347
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bangerth [Wed, 29 Jan 2014 16:38:51 +0000 (16:38 +0000)]
Initialize a variable and explain it.
git-svn-id: https://svn.dealii.org/trunk@32345
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bangerth [Wed, 29 Jan 2014 12:53:51 +0000 (12:53 +0000)]
Add last name of contributor Mihai.
git-svn-id: https://svn.dealii.org/trunk@32344
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maier [Tue, 28 Jan 2014 19:01:32 +0000 (19:01 +0000)]
CMake: Start refactoring of REGISTER_FEATURE
git-svn-id: https://svn.dealii.org/trunk@32339
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maier [Tue, 28 Jan 2014 19:01:29 +0000 (19:01 +0000)]
CMake: Refactor detailed and summary log creation
git-svn-id: https://svn.dealii.org/trunk@32338
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heister [Tue, 28 Jan 2014 19:00:20 +0000 (19:00 +0000)]
step-1: add some text output to the screen
git-svn-id: https://svn.dealii.org/trunk@32337
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maier [Tue, 28 Jan 2014 18:58:22 +0000 (18:58 +0000)]
CMake: Refactor list deduplication into a macro
git-svn-id: https://svn.dealii.org/trunk@32336
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maier [Tue, 28 Jan 2014 13:29:02 +0000 (13:29 +0000)]
Testsuite: Bugfix: Do not copy CMakeCache.txt and CMakeFiles for build tests
git-svn-id: https://svn.dealii.org/trunk@32332
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felix.gruber [Tue, 28 Jan 2014 09:35:21 +0000 (09:35 +0000)]
fix indentation
git-svn-id: https://svn.dealii.org/trunk@32330
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heister [Mon, 27 Jan 2014 20:16:24 +0000 (20:16 +0000)]
fix typo
git-svn-id: https://svn.dealii.org/trunk@32328
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bangerth [Mon, 27 Jan 2014 16:42:35 +0000 (16:42 +0000)]
Avoid an if() in optimized mode by writing the Assert in a more clever way.
git-svn-id: https://svn.dealii.org/trunk@32327
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bangerth [Mon, 27 Jan 2014 03:15:11 +0000 (03:15 +0000)]
Also list where results show up.
git-svn-id: https://svn.dealii.org/trunk@32324
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bangerth [Mon, 27 Jan 2014 02:53:03 +0000 (02:53 +0000)]
Fix obvious oversights in the previous commit...
git-svn-id: https://svn.dealii.org/trunk@32323
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bangerth [Mon, 27 Jan 2014 00:11:56 +0000 (00:11 +0000)]
Document running the testsuite for coverage information.
git-svn-id: https://svn.dealii.org/trunk@32322
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bangerth [Sun, 26 Jan 2014 23:58:30 +0000 (23:58 +0000)]
Provide a couple of constructors that are never called but for which
we apparently need definitions when running the testsuite for
coverage.
git-svn-id: https://svn.dealii.org/trunk@32321
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heister [Sun, 26 Jan 2014 23:41:36 +0000 (23:41 +0000)]
leave a note on how to start step-32
git-svn-id: https://svn.dealii.org/trunk@32320
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turcksin [Sun, 26 Jan 2014 20:22:13 +0000 (20:22 +0000)]
Merge from trunk.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@32319
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bangerth [Sun, 26 Jan 2014 19:36:28 +0000 (19:36 +0000)]
Disallow calling certain functions that have to do with active_fe_index on cells that are not in fact active. Fix the various places where we used to do so (and which probably produced something that made not much sense).
git-svn-id: https://svn.dealii.org/trunk@32318
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bangerth [Sun, 26 Jan 2014 19:36:10 +0000 (19:36 +0000)]
Disallow calling certain functions that have to do with active_fe_index on cells that are not in fact active. Fix the various places where we used to do so (and which probably produced something that made not much sense).
git-svn-id: https://svn.dealii.org/trunk@32317
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bangerth [Sun, 26 Jan 2014 18:47:48 +0000 (18:47 +0000)]
Fix a forgotten case with FENothing (thanks to a testcase by Krzysztof Bzowski).
git-svn-id: https://svn.dealii.org/trunk@32316
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maier [Sun, 26 Jan 2014 14:55:30 +0000 (14:55 +0000)]
CMake: Bugfix: Strip leading and trailing whitespace from linker flags in
order to not confuse cmake-2.8.8
git-svn-id: https://svn.dealii.org/trunk@32315
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maier [Sun, 26 Jan 2014 11:44:31 +0000 (11:44 +0000)]
CMake: Improve error message for invalid user provided CXX and LD flags
git-svn-id: https://svn.dealii.org/trunk@32314
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bangerth [Sat, 25 Jan 2014 14:43:00 +0000 (14:43 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@32313
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bangerth [Sat, 25 Jan 2014 13:20:09 +0000 (13:20 +0000)]
More cleanups in SolutionTransfer.
git-svn-id: https://svn.dealii.org/trunk@32312
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maier [Sat, 25 Jan 2014 09:53:35 +0000 (09:53 +0000)]
CMake: Bugfix: Set a compiler option for the correct build type
git-svn-id: https://svn.dealii.org/trunk@32311
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bangerth [Sat, 25 Jan 2014 04:11:46 +0000 (04:11 +0000)]
Clean up a good amount of code. In particular, do not try to access fe_indices of cells that are not active, since no finite element space is associated with them.
git-svn-id: https://svn.dealii.org/trunk@32310
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bangerth [Sat, 25 Jan 2014 04:09:13 +0000 (04:09 +0000)]
Avoid directly accessing the active_fe_index of a cell that is at this
point no longer active.
git-svn-id: https://svn.dealii.org/trunk@32309
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bangerth [Sat, 25 Jan 2014 02:08:49 +0000 (02:08 +0000)]
Remove a hunk of code that was forgotten in r32297.
git-svn-id: https://svn.dealii.org/trunk@32308
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heister [Fri, 24 Jan 2014 23:18:58 +0000 (23:18 +0000)]
add script to check doxygen formatting
git-svn-id: https://svn.dealii.org/trunk@32307
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heister [Fri, 24 Jan 2014 21:06:34 +0000 (21:06 +0000)]
put deprecated functions into own doxygen group, fix doxygen formatting
git-svn-id: https://svn.dealii.org/trunk@32306
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heister [Fri, 24 Jan 2014 21:05:43 +0000 (21:05 +0000)]
fix doxygen grouping tags
git-svn-id: https://svn.dealii.org/trunk@32305
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heister [Fri, 24 Jan 2014 21:01:03 +0000 (21:01 +0000)]
remove unused variable in quicktest
git-svn-id: https://svn.dealii.org/trunk@32304
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heister [Fri, 24 Jan 2014 21:00:30 +0000 (21:00 +0000)]
fix quick_test
git-svn-id: https://svn.dealii.org/trunk@32303
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kronbichler [Fri, 24 Jan 2014 16:52:51 +0000 (16:52 +0000)]
Fix use of freed memory: Change when to reset the vector
git-svn-id: https://svn.dealii.org/trunk@32300
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heister [Fri, 24 Jan 2014 16:05:50 +0000 (16:05 +0000)]
fix invalid memory access in gridin::read_vtk
git-svn-id: https://svn.dealii.org/trunk@32299
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heister [Fri, 24 Jan 2014 15:47:40 +0000 (15:47 +0000)]
improve error checks and comments for parallel::distributed::Triangulation::load/save
git-svn-id: https://svn.dealii.org/trunk@32298
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bangerth [Fri, 24 Jan 2014 15:33:23 +0000 (15:33 +0000)]
Disallow calling DoFAccessor::set_active_fe_index on non-active cells.
git-svn-id: https://svn.dealii.org/trunk@32297
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bangerth [Fri, 24 Jan 2014 15:33:11 +0000 (15:33 +0000)]
Adjust a few tests to not call set_active_fe_index() on non-active cells.
git-svn-id: https://svn.dealii.org/trunk@32296
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bangerth [Fri, 24 Jan 2014 13:00:43 +0000 (13:00 +0000)]
Mention Martin's change from a couple of days ago.
git-svn-id: https://svn.dealii.org/trunk@32295
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maier [Fri, 24 Jan 2014 11:25:42 +0000 (11:25 +0000)]
CMake: Cleanup: Remove obsolete macro, unify naming of internal macros
git-svn-id: https://svn.dealii.org/trunk@32294
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kronbichler [Fri, 24 Jan 2014 08:11:33 +0000 (08:11 +0000)]
Adjust test output
git-svn-id: https://svn.dealii.org/trunk@32293
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kronbichler [Thu, 23 Jan 2014 21:22:40 +0000 (21:22 +0000)]
Fix test case with 64 bits
git-svn-id: https://svn.dealii.org/trunk@32292
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ryan.grove [Thu, 23 Jan 2014 19:18:05 +0000 (19:18 +0000)]
Fixed typo in step-2 tutorial program.
git-svn-id: https://svn.dealii.org/trunk@32291
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maier [Thu, 23 Jan 2014 18:01:47 +0000 (18:01 +0000)]
CMake: Bugfix: Clear compile variables prior to populating
git-svn-id: https://svn.dealii.org/trunk@32290
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heister [Thu, 23 Jan 2014 17:26:42 +0000 (17:26 +0000)]
fix invalid memory access caused by undefined order of construction of static members (found with ASAN)
git-svn-id: https://svn.dealii.org/trunk@32289
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bangerth [Wed, 22 Jan 2014 21:48:05 +0000 (21:48 +0000)]
Some more from Winnifred.
git-svn-id: https://svn.dealii.org/trunk@32287
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bangerth [Wed, 22 Jan 2014 19:13:57 +0000 (19:13 +0000)]
Patch by Martin Steigemann: Handle the case of zero error indicators better when finding the threshold for mesh refinement.
git-svn-id: https://svn.dealii.org/trunk@32286
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heister [Wed, 22 Jan 2014 15:51:32 +0000 (15:51 +0000)]
step-4: write constants as doubles
git-svn-id: https://svn.dealii.org/trunk@32285
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maier [Wed, 22 Jan 2014 12:16:50 +0000 (12:16 +0000)]
Remove obsolete scripts
git-svn-id: https://svn.dealii.org/trunk@32284
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heister [Tue, 21 Jan 2014 22:10:31 +0000 (22:10 +0000)]
update p4est instructions, remove some outdated stuff
git-svn-id: https://svn.dealii.org/trunk@32283
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kronbichler [Tue, 21 Jan 2014 21:08:38 +0000 (21:08 +0000)]
Adjust test output
git-svn-id: https://svn.dealii.org/trunk@32282
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bangerth [Tue, 21 Jan 2014 17:24:10 +0000 (17:24 +0000)]
Do not set active_fe_index values on non-active cells.
git-svn-id: https://svn.dealii.org/trunk@32281
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heister [Tue, 21 Jan 2014 15:44:16 +0000 (15:44 +0000)]
fix broken PETScWrappers::MPI::Vector::print() in parallel
git-svn-id: https://svn.dealii.org/trunk@32280
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heister [Tue, 21 Jan 2014 14:44:40 +0000 (14:44 +0000)]
fix another place where we should use MPI_Allreduce instead of MPI_Reduce
git-svn-id: https://svn.dealii.org/trunk@32279
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kronbichler [Tue, 21 Jan 2014 08:30:25 +0000 (08:30 +0000)]
Test extract_row_copy, fix two bugs
git-svn-id: https://svn.dealii.org/trunk@32276
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kronbichler [Tue, 21 Jan 2014 07:38:45 +0000 (07:38 +0000)]
Fix test
git-svn-id: https://svn.dealii.org/trunk@32275
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bangerth [Tue, 21 Jan 2014 07:34:12 +0000 (07:34 +0000)]
Improve error message.
git-svn-id: https://svn.dealii.org/trunk@32274
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bangerth [Tue, 21 Jan 2014 06:49:27 +0000 (06:49 +0000)]
Clear active_fe_index flags on non-active cells since they have no meaning.
git-svn-id: https://svn.dealii.org/trunk@32273
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bangerth [Tue, 21 Jan 2014 06:44:34 +0000 (06:44 +0000)]
Another test.
git-svn-id: https://svn.dealii.org/trunk@32272
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bangerth [Tue, 21 Jan 2014 06:39:18 +0000 (06:39 +0000)]
Leave a comment to clarify things.
git-svn-id: https://svn.dealii.org/trunk@32271
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