]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
4 years agoFix a formatting problem with step-60.
Wolfgang Bangerth [Fri, 15 May 2020 16:23:36 +0000 (10:23 -0600)]
Fix a formatting problem with step-60.

Specifically, if doxygen sees the end of a list, it sometimes gets confused and indents
the next line of text as well. That's annoying if the next line of text is the first line
of the commented program (or, more specifically, the heading for the commented program).

4 years agoImprove spelling in step-70.
David Wells [Fri, 15 May 2020 17:47:50 +0000 (13:47 -0400)]
Improve spelling in step-70.

4 years agoMerge pull request #10248 from masterleinad/takeover10228
David Wells [Sat, 16 May 2020 16:18:37 +0000 (12:18 -0400)]
Merge pull request #10248 from masterleinad/takeover10228

[9.2] Take over 10228: Fix warning in step70

4 years agoMerge pull request #10247 from masterleinad/takeover10235
David Wells [Sat, 16 May 2020 16:11:36 +0000 (12:11 -0400)]
Merge pull request #10247 from masterleinad/takeover10235

[9.2] Take over #10235: Specialize BoundingBox<0> to prevent instantiating BoundingBox<-1>.

4 years agoFix warning in step70 10248/head
Peter Munch [Fri, 15 May 2020 14:11:41 +0000 (16:11 +0200)]
Fix warning in step70

4 years agoSpecialize BoundingBox<0> to prevent instantiating BoundingBox<-1>. 10247/head
David Wells [Fri, 15 May 2020 21:11:33 +0000 (17:11 -0400)]
Specialize BoundingBox<0> to prevent instantiating BoundingBox<-1>.

A zero-dimensional bounding box doesn't make sense and causes weird problems
with intel's compiler when the compiler tries to instantiate
BoundingBox::cross_section().

We have to use this workaround and not something like

    BoundingBox<spacedim != 1 ? spacedim - 1 : 1, Number>
    cross_section(const unsigned int direction) const;

to make MSVC happy.

4 years agoMerge pull request #10238 from drwells/step-70-make-unique-9.2
Timo Heister [Fri, 15 May 2020 22:11:19 +0000 (18:11 -0400)]
Merge pull request #10238 from drwells/step-70-make-unique-9.2

[9.2] takeover #10236

4 years agoMerge pull request #10231 from tamiko/pr_10230
Daniel Arndt [Fri, 15 May 2020 21:30:12 +0000 (17:30 -0400)]
Merge pull request #10231 from tamiko/pr_10230

4 years agoUse std_cxx14::make_unique in step-70. 10238/head
David Wells [Fri, 15 May 2020 17:38:40 +0000 (13:38 -0400)]
Use std_cxx14::make_unique in step-70.

4 years agoMerge pull request #10229 from tamiko/pr_10227
Matthias Maier [Fri, 15 May 2020 15:06:54 +0000 (10:06 -0500)]
Merge pull request #10229 from tamiko/pr_10227

[9.2] Take over #10227

4 years agoTest boost/extract_rep*_02: adjust test output for libc++ 10231/head
Matthias Maier [Fri, 15 May 2020 14:59:39 +0000 (09:59 -0500)]
Test boost/extract_rep*_02: adjust test output for libc++

We have to adjust the output after
bfe81e2b89a39792ee48dd7d028e8860cc44551e also for the libc++ variant.

See 9038e6000b681910227e24302e964835a344ddf8

For reference, the difference between libstdc++ and libc++ output is as
follows:
```
--- extract_representative_set_02.with_p4est=true.mpirun=3.output       2020-05-15 09:27:53.256578723 -0500
+++ extract_representative_set_02.with_p4est=true.mpirun=3.output.libstdc++     2020-05-15 09:58:47.149994734 -0500
@@ -137,16 +137,16 @@
 0.5 -0.707107

 DEAL:1::-0.0732233 -0.0732233
-0.21967 -0.0732233
-0.21967 0.292893
+0.292893 -0.0732233
+0.292893 0.292893
 -0.0732233 0.292893
 -0.0732233 -0.0732233

-DEAL:1::0.21967 -1.11022e-16
-1 -1.11022e-16
+DEAL:1::0.21967 -0.0732233
+1 -0.0732233
 1 0.382683
 0.21967 0.382683
-0.21967 -1.11022e-16
+0.21967 -0.0732233
```

4 years agoFix warning in step-70 10229/head
Martin Kronbichler [Fri, 15 May 2020 10:32:16 +0000 (12:32 +0200)]
Fix warning in step-70

4 years agoupdate VERSION for release v9.2.0-rc2
Matthias Maier [Fri, 15 May 2020 06:23:50 +0000 (01:23 -0500)]
update VERSION for release

4 years agoMerge pull request #10226 from tamiko/pr_10225
Martin Kronbichler [Fri, 15 May 2020 06:19:03 +0000 (08:19 +0200)]
Merge pull request #10226 from tamiko/pr_10225

[9.2] Take over #10225

4 years agoFix test output forgotten in #9969 10226/head
Martin Kronbichler [Fri, 15 May 2020 06:12:34 +0000 (08:12 +0200)]
Fix test output forgotten in #9969

4 years agoMerge pull request #10224 from tamiko/pr_10220
Martin Kronbichler [Fri, 15 May 2020 06:00:00 +0000 (08:00 +0200)]
Merge pull request #10224 from tamiko/pr_10220

[9.2] Take over #10220

4 years agoMerge pull request #10223 from tamiko/pr_9078
Martin Kronbichler [Fri, 15 May 2020 05:59:00 +0000 (07:59 +0200)]
Merge pull request #10223 from tamiko/pr_9078

[9.2] Take over #9078

4 years agoMerge pull request #10218 from tamiko/pr_10174
Martin Kronbichler [Fri, 15 May 2020 05:58:09 +0000 (07:58 +0200)]
Merge pull request #10218 from tamiko/pr_10174

[9.2.] Take over #10174

4 years agotests: add additional output file for intel 10224/head
Timo Heister [Fri, 15 May 2020 02:03:25 +0000 (22:03 -0400)]
tests: add additional output file for intel

4 years agoMerge pull request #10216 from marcfehling/take_over10215
Martin Kronbichler [Fri, 15 May 2020 04:59:43 +0000 (06:59 +0200)]
Merge pull request #10216 from marcfehling/take_over10215

[9.2] Take over #10215: Bugfix: Cells may not receive any variable size data.

4 years agoReview by Marc. 10223/head
Luca Heltai [Thu, 14 May 2020 23:45:24 +0000 (01:45 +0200)]
Review by Marc.

4 years agoFixed parameters_23.prm
Luca Heltai [Thu, 14 May 2020 23:12:47 +0000 (01:12 +0200)]
Fixed parameters_23.prm

4 years agoFixed indent.
Luca Heltai [Thu, 14 May 2020 22:28:21 +0000 (00:28 +0200)]
Fixed indent.

4 years agoSome minor changes. Add support for output directory.
Luca Heltai [Tue, 12 May 2020 22:31:42 +0000 (00:31 +0200)]
Some minor changes. Add support for output directory.

4 years ago- Changed the default values for the parameters for the 2D case. The default case...
blaisb [Tue, 12 May 2020 02:55:50 +0000 (22:55 -0400)]
- Changed the default values for the parameters for the 2D case. The default case should run easily and produce better results
- Finalized resulted for the 2D case
- Minor modifications to introduction

4 years ago- Fixed indentation
blaisb [Mon, 11 May 2020 15:58:59 +0000 (11:58 -0400)]
- Fixed indentation
- Corrected small typos /sentences in introduction
- Removed the automatic deletion of .vtk files for step-70

4 years agoFirst draft of results
Luca Heltai [Mon, 11 May 2020 10:55:42 +0000 (12:55 +0200)]
First draft of results

4 years agoFixed indent.
Luca Heltai [Mon, 11 May 2020 00:30:42 +0000 (02:30 +0200)]
Fixed indent.

4 years agoWorking 3d.
Luca Heltai [Sun, 10 May 2020 23:54:35 +0000 (01:54 +0200)]
Working 3d.

4 years agoSwitched to FGMRES.
Luca Heltai [Sun, 10 May 2020 12:04:08 +0000 (14:04 +0200)]
Switched to FGMRES.

4 years agoFixed small issues.
Luca Heltai [Sun, 10 May 2020 10:48:46 +0000 (12:48 +0200)]
Fixed small issues.

4 years agoFix more typos and add a paragraph about particles
Rene Gassmoeller [Sun, 10 May 2020 00:02:17 +0000 (17:02 -0700)]
Fix more typos and add a paragraph about particles

4 years agoFix some typos
Rene Gassmoeller [Sat, 9 May 2020 23:14:21 +0000 (16:14 -0700)]
Fix some typos

4 years agoAddresses all of the corrections and comments of @peterrum
blaisb [Thu, 7 May 2020 02:16:00 +0000 (22:16 -0400)]
Addresses all of the corrections and comments of @peterrum
Introduction and documentation can still be improved.

4 years agoFixed codimension one build.
Luca Heltai [Sat, 2 May 2020 21:31:06 +0000 (23:31 +0200)]
Fixed codimension one build.

4 years agoShort fix to documentation
blaisb [Sat, 2 May 2020 06:07:31 +0000 (02:07 -0400)]
Short fix to documentation

4 years ago- Corrected typos and mistakes
blaisb [Sat, 2 May 2020 05:58:26 +0000 (01:58 -0400)]
- Corrected typos and mistakes
- Finished first pass at documenting step-70
- Changed the default parameter of nitsche penalization to ensure convergence of iterative solver in parallel
- Changed the function driving the motion of the impeller to ensure it comes back at it's original place in then end

4 years agoSome more docs.
Luca Heltai [Fri, 1 May 2020 23:03:03 +0000 (01:03 +0200)]
Some more docs.

4 years agoAllow filenames and cad files.
Luca Heltai [Fri, 1 May 2020 14:58:48 +0000 (16:58 +0200)]
Allow filenames and cad files.

4 years agoTrailing space.
Luca Heltai [Fri, 1 May 2020 13:12:33 +0000 (15:12 +0200)]
Trailing space.

4 years agoMore docs.
Luca Heltai [Fri, 1 May 2020 10:47:20 +0000 (12:47 +0200)]
More docs.

4 years agoFixed typos and small formulas error in the introduction
blaisb [Fri, 1 May 2020 03:05:55 +0000 (23:05 -0400)]
Fixed typos and small formulas error in the introduction

4 years agoRevised and corrected intro.dox
Luca Heltai [Thu, 30 Apr 2020 21:48:33 +0000 (23:48 +0200)]
Revised and corrected intro.dox

4 years agoAdded description of step-70 in top level directory.
Luca Heltai [Thu, 30 Apr 2020 19:33:11 +0000 (21:33 +0200)]
Added description of step-70 in top level directory.

4 years agoAdd implementation of Nitsche for co-dim one
Luca Heltai [Thu, 30 Apr 2020 18:03:55 +0000 (20:03 +0200)]
Add implementation of Nitsche for co-dim one

4 years ago- Fixed a lot of mistakes in equations that prevented rendering
blaisb [Thu, 30 Apr 2020 17:11:06 +0000 (13:11 -0400)]
- Fixed a lot of mistakes in equations that prevented rendering
- Fixed a few spelling mistakes
- Fixed formulation of the weak form for the Nitsche method

4 years agoIndentation fix
blaisb [Thu, 30 Apr 2020 13:05:30 +0000 (09:05 -0400)]
Indentation fix

4 years agoTry to fix doxygen.
Luca Heltai [Thu, 30 Apr 2020 12:09:08 +0000 (14:09 +0200)]
Try to fix doxygen.

4 years agoFinished a first complete draft of the introduction
blaisb [Thu, 30 Apr 2020 04:40:15 +0000 (00:40 -0400)]
Finished a first complete draft of the introduction

4 years agoSome documentation.
Luca Heltai [Tue, 28 Apr 2020 21:36:19 +0000 (23:36 +0200)]
Some documentation.

4 years agoProgress on documentation
blaisb [Mon, 20 Apr 2020 02:19:35 +0000 (22:19 -0400)]
Progress on documentation

4 years agoBegun work on the introduction of the documentation of step-70
blaisb [Sat, 18 Apr 2020 05:39:27 +0000 (01:39 -0400)]
Begun work on the introduction of the documentation of step-70

4 years agoLocal refinement, and output to single vtu + global pvd.
Luca Heltai [Fri, 17 Apr 2020 00:41:45 +0000 (02:41 +0200)]
Local refinement, and output to single vtu + global pvd.

4 years agoCopy doc from step-60.
Luca Heltai [Tue, 14 Apr 2020 23:09:21 +0000 (01:09 +0200)]
Copy doc from step-60.

4 years agoAdded example parameter file.
Luca Heltai [Tue, 14 Apr 2020 23:00:20 +0000 (01:00 +0200)]
Added example parameter file.

4 years agoStep-70
Luca Heltai [Thu, 21 Nov 2019 19:28:22 +0000 (20:28 +0100)]
Step-70

Work in progress for step-70.

Co-authored-by: Bruno Blais <blais.bruno@gmail.com>
4 years agoMerge pull request #10210 from marcfehling/take_over9969
Matthias Maier [Fri, 15 May 2020 03:11:00 +0000 (22:11 -0500)]
Merge pull request #10210 from marcfehling/take_over9969

[9.2] Take over #9969: Revisited binary search for parallel::distributed::GridRefinement.

4 years agoMerge pull request #10217 from tamiko/pr_10198
Timo Heister [Fri, 15 May 2020 01:43:18 +0000 (21:43 -0400)]
Merge pull request #10217 from tamiko/pr_10198

[9.2] Take over #10198

4 years agoMerge pull request #10213 from tamiko/pr_10207
Timo Heister [Fri, 15 May 2020 01:41:50 +0000 (21:41 -0400)]
Merge pull request #10213 from tamiko/pr_10207

[9.2] Take over #10207

4 years agoDirty fix. 10218/head
Luca Heltai [Thu, 14 May 2020 20:57:21 +0000 (22:57 +0200)]
Dirty fix.

4 years agoFailing test on find active cell around point.
Luca Heltai [Wed, 13 May 2020 00:59:32 +0000 (02:59 +0200)]
Failing test on find active cell around point.

4 years agoMake further edits to step-50.cc. 10217/head
Wolfgang Bangerth [Thu, 14 May 2020 16:22:09 +0000 (10:22 -0600)]
Make further edits to step-50.cc.

4 years agoAvoid a statement that appears to confuse doxygen.
Wolfgang Bangerth [Wed, 13 May 2020 22:52:45 +0000 (16:52 -0600)]
Avoid a statement that appears to confuse doxygen.

4 years agoPrint an error message if no input is given.
Wolfgang Bangerth [Wed, 13 May 2020 22:03:22 +0000 (16:03 -0600)]
Print an error message if no input is given.

4 years agoRename variables to their standard names.
Wolfgang Bangerth [Wed, 13 May 2020 21:41:24 +0000 (15:41 -0600)]
Rename variables to their standard names.

4 years agoUse the name make_coefficient_table() in analogy to make_shared() etc.
Wolfgang Bangerth [Wed, 13 May 2020 21:39:48 +0000 (15:39 -0600)]
Use the name make_coefficient_table() in analogy to make_shared() etc.

4 years agoUse switch statements for finite enumerations.
Wolfgang Bangerth [Wed, 13 May 2020 21:39:04 +0000 (15:39 -0600)]
Use switch statements for finite enumerations.

4 years agoMinor code improvements to step-50.
Wolfgang Bangerth [Wed, 13 May 2020 21:36:34 +0000 (15:36 -0600)]
Minor code improvements to step-50.

4 years agoUse better variable names when computing the error estimator.
Wolfgang Bangerth [Wed, 13 May 2020 21:34:30 +0000 (15:34 -0600)]
Use better variable names when computing the error estimator.

4 years agoSimplify creation of a std::set.
Wolfgang Bangerth [Wed, 13 May 2020 21:32:27 +0000 (15:32 -0600)]
Simplify creation of a std::set.

4 years agoBreak a long string to lead to a better line break.
Wolfgang Bangerth [Wed, 13 May 2020 21:30:02 +0000 (15:30 -0600)]
Break a long string to lead to a better line break.

4 years agoRename a variable in step-50.
Wolfgang Bangerth [Wed, 13 May 2020 21:26:53 +0000 (15:26 -0600)]
Rename a variable in step-50.

4 years agoUse a better description of the error estimator vector in the output.
Wolfgang Bangerth [Wed, 13 May 2020 21:24:16 +0000 (15:24 -0600)]
Use a better description of the error estimator vector in the output.

4 years agoMake the logic in step-50's main() function simpler.
Wolfgang Bangerth [Wed, 13 May 2020 21:23:00 +0000 (15:23 -0600)]
Make the logic in step-50's main() function simpler.

4 years agoUpdate the commentary of step-50.
Wolfgang Bangerth [Wed, 13 May 2020 21:22:34 +0000 (15:22 -0600)]
Update the commentary of step-50.

4 years agoUpdates to the results section of step-50.
Wolfgang Bangerth [Wed, 13 May 2020 21:18:12 +0000 (15:18 -0600)]
Updates to the results section of step-50.

4 years agoUpdates to the introduction of step-50.
Wolfgang Bangerth [Wed, 13 May 2020 21:18:02 +0000 (15:18 -0600)]
Updates to the introduction of step-50.

4 years agoBugfix: Cells may not receive any variable size data. 10216/head
Marc Fehling [Thu, 14 May 2020 22:25:31 +0000 (00:25 +0200)]
Bugfix: Cells may not receive any variable size data.

4 years agoMerge pull request #10209 from masterleinad/take_over10013
Matthias Maier [Thu, 14 May 2020 20:54:10 +0000 (15:54 -0500)]
Merge pull request #10209 from masterleinad/take_over10013

[9.2] Take over #10013: Introduced p::d::ErrorPredictor.

4 years agoFix extract_rtree_level for small problem sizes 10213/head
Peter Munch [Thu, 14 May 2020 08:32:50 +0000 (10:32 +0200)]
Fix extract_rtree_level for small problem sizes

4 years agoAdded tests with different compositions of criteria vectors for fixed number refinement. 10210/head
Marc Fehling [Thu, 14 May 2020 18:44:41 +0000 (20:44 +0200)]
Added tests with different compositions of criteria vectors for fixed number refinement.

4 years agoMerge pull request #10212 from masterleinad/takeover10208
Martin Kronbichler [Thu, 14 May 2020 20:18:30 +0000 (22:18 +0200)]
Merge pull request #10212 from masterleinad/takeover10208

[9.2] Take over #10208: Fix python FunctionManifold

4 years agoFix python FunctionManifold 10212/head
Alexander Grayver [Thu, 14 May 2020 09:25:39 +0000 (11:25 +0200)]
Fix python FunctionManifold

4 years agoRevisited adjust_interesting_range for parallel::distributed::GridRefinement.
Marc Fehling [Tue, 28 Apr 2020 13:41:32 +0000 (15:41 +0200)]
Revisited adjust_interesting_range for parallel::distributed::GridRefinement.

4 years agoIntroduced p::d::ErrorPredictor. 10209/head
Marc Fehling [Fri, 22 Nov 2019 17:06:14 +0000 (18:06 +0100)]
Introduced p::d::ErrorPredictor.

Predicts error after adaptation based on future_fe_indices and CellStatus.

4 years agoMerge pull request #10203 from tamiko/pr_10201
Timo Heister [Thu, 14 May 2020 11:56:13 +0000 (07:56 -0400)]
Merge pull request #10203 from tamiko/pr_10201

[9.2.] Take over #10201

4 years agoMerge pull request #10200 from masterleinad/fix_mpi_condense_petsc_complex_9_2
Timo Heister [Thu, 14 May 2020 00:29:47 +0000 (20:29 -0400)]
Merge pull request #10200 from masterleinad/fix_mpi_condense_petsc_complex_9_2

[9.2] Take over #10199:  Choose output files for mpi/condense_01 correctly

4 years agoMerge pull request #10204 from tamiko/pr_10202
Wolfgang Bangerth [Wed, 13 May 2020 23:43:42 +0000 (01:43 +0200)]
Merge pull request #10204 from tamiko/pr_10202

[9.2] Take over #10202 #10202 Update an entry in the changelog. See #10072

4 years agoUpdate an entry in the changelog. 10204/head
Wolfgang Bangerth [Wed, 13 May 2020 23:05:53 +0000 (17:05 -0600)]
Update an entry in the changelog.

4 years agoCMake: relax arpack and parpack library directory requirements 10203/head
Matthias Maier [Wed, 13 May 2020 22:54:10 +0000 (17:54 -0500)]
CMake: relax arpack and parpack library directory requirements

Some Linux distributions install the parallel libparpack.so* component
in an MPI vendor specific directory different from the location of the
serial libarpack.so* library. We can thus not assume that both are
located in the same directory.

Closes: #10197
4 years agoChoose output files for mpi/condense_01 correctly 10200/head
Daniel Arndt [Wed, 13 May 2020 22:09:46 +0000 (18:09 -0400)]
Choose output files for mpi/condense_01 correctly

4 years agoMerge pull request #10196 from tamiko/pr_10195
Wolfgang Bangerth [Wed, 13 May 2020 20:54:35 +0000 (22:54 +0200)]
Merge pull request #10196 from tamiko/pr_10195

[9.2] Take over #10195

4 years agoDoxygen: Fix include strip 10196/head
Matthias Maier [Wed, 13 May 2020 19:19:18 +0000 (14:19 -0500)]
Doxygen: Fix include strip

This fixes a bug introduced in #10187

4 years agoMerge pull request #10192 from tamiko/pr_10189
Timo Heister [Wed, 13 May 2020 18:38:07 +0000 (14:38 -0400)]
Merge pull request #10192 from tamiko/pr_10189

Take over #10189 and #10191

4 years agoMerge pull request #10193 from masterleinad/take_10190
David Wells [Wed, 13 May 2020 17:32:21 +0000 (13:32 -0400)]
Merge pull request #10193 from masterleinad/take_10190

[9.2] Take over #10190: Run Travis on all branches

4 years agoRun Travis on all branches 10193/head
Daniel Arndt [Wed, 13 May 2020 16:41:20 +0000 (12:41 -0400)]
Run Travis on all branches

4 years agoDocumentation: Treat code gallery projects as examples 10192/head
Matthias Maier [Wed, 13 May 2020 16:02:38 +0000 (11:02 -0500)]
Documentation: Treat code gallery projects as examples

Installing the code gallery projects as part of the html documentation
is not ideal. Let us install the code gallery projects as a sub
directory under the EXAMPLES_RELDIR instead:

  examples/code-gallery/*
  examples/step-*

4 years agoDocumentation: fix make_gallery.pl
Matthias Maier [Wed, 13 May 2020 16:46:31 +0000 (11:46 -0500)]
Documentation: fix make_gallery.pl

Otherwise newer doxygen does not parse the generated *.h files...
See #8972

4 years agoMerge pull request #10187 from tamiko/pr_10178
Matthias Maier [Wed, 13 May 2020 16:48:22 +0000 (11:48 -0500)]
Merge pull request #10187 from tamiko/pr_10178

[9.2] Take over #10178

4 years agoMerge pull request #10186 from tamiko/pr_10176
David Wells [Wed, 13 May 2020 16:01:08 +0000 (12:01 -0400)]
Merge pull request #10186 from tamiko/pr_10176

[9.2] Take over #10176


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