Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31294 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Do not list pure header files in CTEST_EXTRA_COVERAGE_GLOB

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31292 0785d39b-7218-0410-832d-ea1e28bc413d

Delete unused variables in matrix_tools.

git-svn-id: https://svn.dealii.org/trunk@31291 0785d39b-7218-0410-832d-ea1e28bc413d

Provide a run_coverage.cmake script

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31290 0785d39b-7218-0410-832d-ea1e28bc413d

Cleanup

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31289 0785d39b-7218-0410-832d-ea1e28bc413d

Fix comments

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31288 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31287 0785d39b-7218-0410-832d-ea1e28bc413d

Use WorkStream in Step-14. Need to update the documentation and to use TBB instead of new_thread.

git-svn-id: https://svn.dealii.org/trunk@31286 0785d39b-7218-0410-832d-ea1e28bc413d

Use WorkStream in Step-13. Need to update the documentation and to use TBB instead of new_thread.

git-svn-id: https://svn.dealii.org/trunk@31285 0785d39b-7218-0410-832d-ea1e28bc413d

Cleanup and provide some more output

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31283 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Correct pickup regex for coverage files

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31280 0785d39b-7218-0410-832d-ea1e28bc413d

Add Coverage support

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31279 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: It is safe to export TBB_IMPLEMENT_CXX1X and the user should do this, too

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31275 0785d39b-7218-0410-832d-ea1e28bc413d

Workaround for a constexpr bug in gcc-4.8* on Windows and Mac

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31274 0785d39b-7218-0410-832d-ea1e28bc413d

Try to fix an issue with MinGW64 4.8.1

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31273 0785d39b-7218-0410-832d-ea1e28bc413d

GridTools::partition_triangulation no longer uses user_index which fixes step-18 in debug mode

git-svn-id: https://svn.dealii.org/trunk@31272 0785d39b-7218-0410-832d-ea1e28bc413d

take over 31267,31269,31270 from the branch

git-svn-id: https://svn.dealii.org/trunk@31271 0785d39b-7218-0410-832d-ea1e28bc413d

mention changes

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31270 0785d39b-7218-0410-832d-ea1e28bc413d

fix how we pick the first cell to output in DataOut when it is filtered (see tests/bits/data_out_08.cc)

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31269 0785d39b-7218-0410-832d-ea1e28bc413d

update test description and output

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31268 0785d39b-7218-0410-832d-ea1e28bc413d

fix index computation in DataOut that was completely broken if the cells are filtered

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31267 0785d39b-7218-0410-832d-ea1e28bc413d

add failing test

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31266 0785d39b-7218-0410-832d-ea1e28bc413d

add assert for a wrong index computation (fix comes soon)

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31265 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31264 0785d39b-7218-0410-832d-ea1e28bc413d

Take over r31262 from branch_port_the_testsuite

Fix opaque type problem in derivative_approximation.h

git-svn-id: https://svn.dealii.org/trunk@31263 0785d39b-7218-0410-832d-ea1e28bc413d

Fix opaque type problem in derivative_approximation.h

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31262 0785d39b-7218-0410-832d-ea1e28bc413d

Unify before sort...

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31261 0785d39b-7218-0410-832d-ea1e28bc413d

Add update_ghost_values and compress to parallel block vector for a consistent interface with the parallel non-block vector.

git-svn-id: https://svn.dealii.org/trunk@31260 0785d39b-7218-0410-832d-ea1e28bc413d

Adjust comments

git-svn-id: https://svn.dealii.org/trunk@31259 0785d39b-7218-0410-832d-ea1e28bc413d

Delete stray 'of'

git-svn-id: https://svn.dealii.org/trunk@31258 0785d39b-7218-0410-832d-ea1e28bc413d

report correct error code

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31257 0785d39b-7218-0410-832d-ea1e28bc413d

group all-headers together

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31256 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Declare LogStream::operator<< as a non member function to get
compatible results under C++11 overload resolution rules

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31255 0785d39b-7218-0410-832d-ea1e28bc413d

Remove DeadlockKiller from tests. The rationale is

 (a) it is no longer necessary with ctest which will take care of killing
     deadlocked tests, too.

 (b) exiting on the main thread without joining the other threads first
     violates current language standard - so a significant rewrite would be
     necessary

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31254 0785d39b-7218-0410-832d-ea1e28bc413d

Print out exception details in a portable manner

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31253 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: remove stale failing_* files, provide some more information in failing RUN and DIFF stages

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31251 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Invoke sort with C locale to make the output locale independent

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31250 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31249 0785d39b-7218-0410-832d-ea1e28bc413d

Avoid 'typename' outside templates.

git-svn-id: https://svn.dealii.org/trunk@31248 0785d39b-7218-0410-832d-ea1e28bc413d

Replace Threads with WorkStream in step-9. Documentation still needs to be updated.

git-svn-id: https://svn.dealii.org/trunk@31247 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Guard correctly

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31246 0785d39b-7218-0410-832d-ea1e28bc413d

Nice try, nice try...

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31245 0785d39b-7218-0410-832d-ea1e28bc413d

Add support for Cygwin64

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31244 0785d39b-7218-0410-832d-ea1e28bc413d

Modify data_out.cc to copy the patches in parrallel.

git-svn-id: https://svn.dealii.org/trunk@31243 0785d39b-7218-0410-832d-ea1e28bc413d

Explicitly state source and result files for failing diffs so that it
is easier to find the right files when trying to update tests.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31242 0785d39b-7218-0410-832d-ea1e28bc413d

Adjust output.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31241 0785d39b-7218-0410-832d-ea1e28bc413d

Replace distance by using SynchronousIterators in derivative_approximation.

git-svn-id: https://svn.dealii.org/trunk@31240 0785d39b-7218-0410-832d-ea1e28bc413d

Increase precision to get under numdiffs limit.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31239 0785d39b-7218-0410-832d-ea1e28bc413d

Guard 'noexcept' with appropriate flag.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31238 0785d39b-7218-0410-832d-ea1e28bc413d

We indeed need to export TBB_IMPLEMENT_CPP0X=1 more freely. TODO: Is it
safe to export TBB_IMPLEMENT_CPP0X for headers used from an external
library?

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31237 0785d39b-7218-0410-832d-ea1e28bc413d

Add noexcept(false) also to ~GrowingVectorMemory (and its base class)

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31236 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Propagate exceptions out of ~Subscriptor in C++11 mode

According to the C++11 standard [class.dtor] 3 in combination with
[except.spec] 14 and [except.spec] 9---as explained in detail in
[1]---we're guilty of just terminating in case of throwing an exception in
a destructor.

[1] http://www.open-std.org/jtc1/sc22/wg21/docs/papers/2010/n3204.htm

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31235 0785d39b-7218-0410-832d-ea1e28bc413d

Rename DEAL_II_CAN_USE_CXX11 to DEAL_II_USE_CXX11 to make the fact clear that we'll use it..
Provide a compatibility definition of DEAL_II_CAN_USE_CXX11 in config.h.in

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31234 0785d39b-7218-0410-832d-ea1e28bc413d

Remove debug output accidentally committed in r31180.

git-svn-id: https://svn.dealii.org/trunk@31233 0785d39b-7218-0410-832d-ea1e28bc413d

Replace the second Threads by WorkStream in matrix_tools.cc

git-svn-id: https://svn.dealii.org/trunk@31232 0785d39b-7218-0410-832d-ea1e28bc413d

Fix typo.

git-svn-id: https://svn.dealii.org/trunk@31231 0785d39b-7218-0410-832d-ea1e28bc413d

Replace the first Threads by WorkStream in matrix_tools.cc

git-svn-id: https://svn.dealii.org/trunk@31230 0785d39b-7218-0410-832d-ea1e28bc413d

Fix an issue with __PRETTY_FUNCTION__ and clang

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31229 0785d39b-7218-0410-832d-ea1e28bc413d

Workaround an issue with clang and enabled C++11 mode

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31228 0785d39b-7218-0410-832d-ea1e28bc413d

Add a comment.

git-svn-id: https://svn.dealii.org/trunk@31227 0785d39b-7218-0410-832d-ea1e28bc413d

Workaround an issue with bundled tbb and clang in C++11 mode

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31226 0785d39b-7218-0410-832d-ea1e28bc413d

Provide at least 7 digits of accuracy so that numdiff with its 6 digits of relative accuracy can work its magic.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31225 0785d39b-7218-0410-832d-ea1e28bc413d

Clarify a couple of items.

git-svn-id: https://svn.dealii.org/trunk@31224 0785d39b-7218-0410-832d-ea1e28bc413d

Disable output to console.

git-svn-id: https://svn.dealii.org/trunk@31223 0785d39b-7218-0410-832d-ea1e28bc413d

Disable warning #135 on intel compilers.

git-svn-id: https://svn.dealii.org/trunk@31222 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31221 0785d39b-7218-0410-832d-ea1e28bc413d

Export ZLIB version as well

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31216 0785d39b-7218-0410-832d-ea1e28bc413d

Finish documentation

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31215 0785d39b-7218-0410-832d-ea1e28bc413d

Delete obsolete files

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31214 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31213 0785d39b-7218-0410-832d-ea1e28bc413d

Announce tutorial program also on news page

git-svn-id: https://svn.dealii.org/trunk@31212 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31211 0785d39b-7218-0410-832d-ea1e28bc413d

Provide MPI version number (and OMPI version number as well)

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31210 0785d39b-7218-0410-832d-ea1e28bc413d

Add version information for mumps, tbb and umfpack

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31209 0785d39b-7218-0410-832d-ea1e28bc413d

Add an instantiation.

git-svn-id: https://svn.dealii.org/trunk@31208 0785d39b-7218-0410-832d-ea1e28bc413d

Rename (setup|clean|prune)_test to (setup|clean|prune)_tests

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31207 0785d39b-7218-0410-832d-ea1e28bc413d

Help some compilers (notably xlC) with name lookup.

git-svn-id: https://svn.dealii.org/trunk@31203 0785d39b-7218-0410-832d-ea1e28bc413d

Rewire the reading of the obstacle: either say 'sphere' or 'read from file'.

git-svn-id: https://svn.dealii.org/trunk@31202 0785d39b-7218-0410-832d-ea1e28bc413d

Minor cleanup of parameter declaration. Remove the option 'refinement strategy = fixed dofs' from the parameters since it wasn't actually implemented.

git-svn-id: https://svn.dealii.org/trunk@31201 0785d39b-7218-0410-832d-ea1e28bc413d

Remove unnecessary template qualifier that icc chokes on

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31200 0785d39b-7218-0410-832d-ea1e28bc413d

Add missing template instantiations

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31199 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31198 0785d39b-7218-0410-832d-ea1e28bc413d

Disable the "fail" and "a-framework" categories for tests

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31197 0785d39b-7218-0410-832d-ea1e28bc413d

Add a Nightly branch

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31196 0785d39b-7218-0410-832d-ea1e28bc413d

Use WorkStream instead of Thread in DerivativeApproximation::approximate_derivative.

git-svn-id: https://svn.dealii.org/trunk@31195 0785d39b-7218-0410-832d-ea1e28bc413d

Refactor test layout: Move all relevant parts of the new testsuite to the source directory so that it can still be run if ./tests is unavailable

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31194 0785d39b-7218-0410-832d-ea1e28bc413d

Reactivate -O2 for icc-14*

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31193 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31192 0785d39b-7218-0410-832d-ea1e28bc413d

Replace Threads by WorkStream in dof_tools_constraints.cc

git-svn-id: https://svn.dealii.org/trunk@31191 0785d39b-7218-0410-832d-ea1e28bc413d

Remove test. The functionality of this test can not be verified if we work in directories other than the source directory since there we don't know anything about the file system layout.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31190 0785d39b-7218-0410-832d-ea1e28bc413d

Make other necessary adjustments.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31189 0785d39b-7218-0410-832d-ea1e28bc413d

Fix search path. again.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31188 0785d39b-7218-0410-832d-ea1e28bc413d

Remove top lines with absolute paths.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31187 0785d39b-7218-0410-832d-ea1e28bc413d

Fix search path.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31186 0785d39b-7218-0410-832d-ea1e28bc413d

Rework.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31185 0785d39b-7218-0410-832d-ea1e28bc413d

Only set TMPDIR if it isn't already set.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31184 0785d39b-7218-0410-832d-ea1e28bc413d

Fix typo.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31183 0785d39b-7218-0410-832d-ea1e28bc413d

Doc: Introduce two more links and regroup "Home" in the navbar

git-svn-id: https://svn.dealii.org/trunk@31182 0785d39b-7218-0410-832d-ea1e28bc413d

Merge from mainline.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31181 0785d39b-7218-0410-832d-ea1e28bc413d

take over r31179 to mainline

git-svn-id: https://svn.dealii.org/trunk@31180 0785d39b-7218-0410-832d-ea1e28bc413d