]>
https://gitweb.dealii.org/ - dealii.git/log
David Wells [Thu, 10 Aug 2017 18:10:35 +0000 (14:10 -0400)]
Fix a wrong comment.
we can still do things if we are on the boundary.
David Wells [Sat, 12 Aug 2017 00:13:32 +0000 (20:13 -0400)]
Overhaul GridTools::internal::fix_up_object.
The primary issue with excising Boundary from the library is the lack of
an equivalent project_to_surface function in the Manifold code (since
Manifolds don't know anything about faces or lines, just points and
geodesics). Fortunately, this function is only called in one place, and
the default implementation in StraightManifold is the only
implementation in the library: hence, we get around this issue by
copying and pasting StraightManifold::project_to_surface into the new
internal project_to_object function and marking this change as
incompatible.
To the best of the author's knowledge, no users have implemented their
own custom project_to_surface nor are they using the one function that
calls this (GridTools::fix_up_distorted_child_cells) so this small
incompatibility is acceptable.
David Wells [Sat, 12 Aug 2017 00:07:52 +0000 (20:07 -0400)]
Add a clarifying assertion.
Luca Heltai [Wed, 23 Mar 2016 15:26:07 +0000 (16:26 +0100)]
Use Manifold, not boundary, functionality.
Daniel Arndt [Sun, 8 Oct 2017 20:45:19 +0000 (22:45 +0200)]
Merge pull request #5199 from drwells/extra-assimp-hint
Add an extra hint for assimp.
David Wells [Sun, 8 Oct 2017 17:38:53 +0000 (13:38 -0400)]
Merge pull request #5204 from davydden/mg_interface_size_type
add size_type to MGInterfaceOperator
Daniel Arndt [Sun, 8 Oct 2017 10:39:10 +0000 (12:39 +0200)]
Merge pull request #5206 from bangerth/simplify
Use std::unique_ptr instead of std::shared_ptr.
Wolfgang Bangerth [Sat, 7 Oct 2017 03:33:31 +0000 (21:33 -0600)]
Use std::unique_ptr instead of std::shared_ptr.
Wolfgang Bangerth [Sat, 7 Oct 2017 03:30:34 +0000 (21:30 -0600)]
Merge pull request #5160 from danshapero/bbox
bounding box for triangulation and cell iterators [WIP]
danshapero [Tue, 26 Sep 2017 21:49:06 +0000 (14:49 -0700)]
Added functions to compute bounding box for triangulation, accessors
Denis Davydov [Fri, 6 Oct 2017 16:55:45 +0000 (18:55 +0200)]
add size_type to MGInterfaceOperator
This might be needed when one uses a single wrapper class
to define level block operators based on non-block versions.
Martin Kronbichler [Fri, 6 Oct 2017 15:35:59 +0000 (17:35 +0200)]
Merge pull request #5189 from bangerth/aligned-vector
Allow using objects in Table and AlignedVector that are not copyable.
Wolfgang Bangerth [Fri, 6 Oct 2017 13:56:04 +0000 (07:56 -0600)]
Simplify code.
Luca Heltai [Fri, 6 Oct 2017 12:59:25 +0000 (14:59 +0200)]
Merge pull request #5196 from asartori86/fix_sundials
fix sundials interface for NON-MPI installations
Daniel Arndt [Fri, 6 Oct 2017 08:26:34 +0000 (10:26 +0200)]
Merge pull request #5202 from tcclevenger/mesh_loop
Removing an unused variable in mesh_loop.h
Martin Kronbichler [Fri, 6 Oct 2017 07:17:29 +0000 (09:17 +0200)]
Merge pull request #5200 from drwells/constraintmatrix-improvements
ConstraintMatrix improvements
David Wells [Thu, 5 Oct 2017 19:54:30 +0000 (15:54 -0400)]
Add an extra hint for assimp.
If assimp has its own directory, e.g., ASSIMP_DIR=/opt/assimp/, then
this hint is needed.
David Wells [Thu, 5 Oct 2017 20:32:48 +0000 (16:32 -0400)]
Add a finite-ness assertion.
David Wells [Thu, 5 Oct 2017 20:32:30 +0000 (16:32 -0400)]
Realign some arguments.
David Wells [Thu, 5 Oct 2017 20:32:09 +0000 (16:32 -0400)]
Prefer VectorType to VEC.
David Wells [Thu, 5 Oct 2017 20:26:00 +0000 (16:26 -0400)]
Update some comments for ConstraintMatrixData.
We no longer use shared pointers here.
Wolfgang Bangerth [Fri, 6 Oct 2017 03:44:59 +0000 (21:44 -0600)]
Adjust tests.
tcclevenger [Fri, 6 Oct 2017 01:36:11 +0000 (21:36 -0400)]
remove unused variable
Matthias Maier [Fri, 6 Oct 2017 01:14:05 +0000 (20:14 -0500)]
Merge pull request #5169 from tamiko/generalized_interpolation_3
Reimplement VectorTools::interpolate_based_on_material_id
Matthias Maier [Thu, 5 Oct 2017 19:54:37 +0000 (14:54 -0500)]
simplify code
Wolfgang Bangerth [Thu, 5 Oct 2017 20:34:31 +0000 (14:34 -0600)]
Merge pull request #5167 from luca-heltai/kinsol
KINSOL support.
Matthias Maier [Wed, 27 Sep 2017 21:00:01 +0000 (16:00 -0500)]
Reimplement VectorTools::interpolate_based_on_material_id
Matthias Maier [Thu, 5 Oct 2017 19:35:42 +0000 (14:35 -0500)]
Merge pull request #5198 from bangerth/update
Update to VectorTools::interpolate
Wolfgang Bangerth [Thu, 5 Oct 2017 19:17:11 +0000 (13:17 -0600)]
Entirely avoid memory allocation in two places.
Wolfgang Bangerth [Wed, 4 Oct 2017 14:41:32 +0000 (08:41 -0600)]
Use only one FEValues object.
>
> Currently, there is one FEValues object that is reinit'd in the innermost
> function, but that function may be called multiple times for the same
> cell for different base elements. That is wasteful, so avoid it.
>
The solution is to reinit it at the outermost place.
Wolfgang Bangerth [Tue, 3 Oct 2017 21:42:02 +0000 (15:42 -0600)]
Avoid passing around ints by reference.
Wolfgang Bangerth [Tue, 3 Oct 2017 21:39:39 +0000 (15:39 -0600)]
Minor optimization of some memory allocation.
Luca Heltai [Thu, 5 Oct 2017 10:25:44 +0000 (12:25 +0200)]
Fixed AS comments.
Wolfgang Bangerth [Thu, 5 Oct 2017 03:48:35 +0000 (21:48 -0600)]
Simplify code by omitting members that are now always either trueor false.
Daniel Arndt [Wed, 4 Oct 2017 23:02:35 +0000 (01:02 +0200)]
Merge pull request #5195 from masterleinad/reduce_all_reduce
Reduce number of internal::all_reduce versions
Daniel Arndt [Tue, 3 Oct 2017 22:53:21 +0000 (00:53 +0200)]
Reduce number of versions of internal::all_reduce
Daniel Arndt [Wed, 4 Oct 2017 08:29:09 +0000 (10:29 +0200)]
Add test for operator== and operator!= for ArrayView
Daniel Arndt [Tue, 3 Oct 2017 22:53:11 +0000 (00:53 +0200)]
Introduce operator== and operator!= for ArrayView
Martin Kronbichler [Wed, 4 Oct 2017 21:01:27 +0000 (23:01 +0200)]
Merge pull request #5175 from masterleinad/mg_transfer_block
MGTransferBlockMatrixFree with a separate DoFHandler for each block
David Wells [Wed, 4 Oct 2017 19:08:10 +0000 (15:08 -0400)]
Merge pull request #5193 from bangerth/bb-update
Doc update for GridTools::compute_bounding_box().
Daniel Arndt [Wed, 4 Oct 2017 18:03:45 +0000 (20:03 +0200)]
Merge pull request #5192 from masterleinad/fix_slepc_test
Use MUMPS in SLEPcWrappers test
Daniel Arndt [Tue, 3 Oct 2017 20:04:05 +0000 (22:04 +0200)]
Remove extra ';'
Timo Heister [Wed, 4 Oct 2017 17:47:09 +0000 (13:47 -0400)]
Merge pull request #5176 from bangerth/simplify-code
Simplify logic in p::d::Triangulation.
Alberto Sartori [Wed, 4 Oct 2017 10:04:57 +0000 (12:04 +0200)]
fix sundials interface for NON-MPI installations
Wolfgang Bangerth [Tue, 3 Oct 2017 01:03:47 +0000 (19:03 -0600)]
Add changelog entry.
Wolfgang Bangerth [Tue, 3 Oct 2017 01:02:34 +0000 (19:02 -0600)]
Add a test.
Wolfgang Bangerth [Wed, 4 Oct 2017 15:28:37 +0000 (09:28 -0600)]
Use the correct move semantics in the correct places.
Wolfgang Bangerth [Sun, 1 Oct 2017 22:58:41 +0000 (16:58 -0600)]
Simplify code.
The previous patch made 'refinement_in_progress' obsolete. Remove it.
Wolfgang Bangerth [Tue, 3 Oct 2017 01:02:21 +0000 (19:02 -0600)]
Allow using objects in Table and AlignedVector that are not copyable.
Wolfgang Bangerth [Tue, 3 Oct 2017 21:08:12 +0000 (15:08 -0600)]
Merge pull request #5194 from masterleinad/rempve_semicolon
Remove extra ';'
Daniel Arndt [Tue, 3 Oct 2017 16:46:04 +0000 (18:46 +0200)]
Use MUMPS in PETScWrappers::Jacobi and PETScWrappers::BlockJacobi if available
Denis Davydov [Tue, 3 Oct 2017 20:07:05 +0000 (22:07 +0200)]
Merge pull request #5174 from davydden/la_p_block_scalar_product
add LA::d::BlockVector:: multivector_inner_product()
Daniel Arndt [Tue, 3 Oct 2017 20:04:05 +0000 (22:04 +0200)]
Remove extra ';'
Wolfgang Bangerth [Tue, 3 Oct 2017 19:27:55 +0000 (13:27 -0600)]
Add a test.
Wolfgang Bangerth [Tue, 3 Oct 2017 19:27:46 +0000 (13:27 -0600)]
Doc update for GridTools::compute_bounding_box().
danshapero [Wed, 27 Sep 2017 00:45:02 +0000 (17:45 -0700)]
Changed constructor for bounding box to accept mildly degenerate input
Denis Davydov [Tue, 3 Oct 2017 17:54:16 +0000 (19:54 +0200)]
minor doxygen fixes
Daniel Arndt [Tue, 3 Oct 2017 14:35:48 +0000 (16:35 +0200)]
Merge pull request #5182 from bangerth/update-test
Update a test.
Luca Heltai [Tue, 3 Oct 2017 12:54:33 +0000 (14:54 +0200)]
Merge pull request #5151 from tamiko/generalized_interpolation_2
Improve VectorTools::interpolate: Transformation for systems
Luca Heltai [Tue, 3 Oct 2017 12:53:32 +0000 (14:53 +0200)]
Merge pull request #5183 from bangerth/doc-update
A minor doc update to class CellID.
Wolfgang Bangerth [Tue, 3 Oct 2017 12:45:20 +0000 (06:45 -0600)]
Merge pull request #5178 from masterleinad/fix_compile_petsc_complex
Fix compilation with complex-valued PETSc
Luca Heltai [Tue, 3 Oct 2017 12:33:09 +0000 (14:33 +0200)]
Merge pull request #5172 from davydden/parpack_pointers
parpack: add additional solve() which takes eigenvectors as pointers
Daniel Arndt [Tue, 3 Oct 2017 11:00:42 +0000 (13:00 +0200)]
static_asserts for SUNDIALS solvers
Denis Davydov [Mon, 2 Oct 2017 18:00:26 +0000 (20:00 +0200)]
make sure multivector_inner_product() updates Property of LAPACKFullMatrix accordingly
Denis Davydov [Sat, 30 Sep 2017 21:36:42 +0000 (23:36 +0200)]
add LA::d::BlockVector::multivector_inner_product()
Denis Davydov [Sat, 30 Sep 2017 21:34:17 +0000 (23:34 +0200)]
add Utilities::MPI::sum() for LAPACKFullMatrix objects
Wolfgang Bangerth [Tue, 3 Oct 2017 03:02:52 +0000 (21:02 -0600)]
Merge pull request #5190 from drwells/add-lapacksupport-docs
Enable doxygen for the LAPACKSupport namespace.
David Wells [Tue, 3 Oct 2017 02:11:26 +0000 (22:11 -0400)]
Enable doxygen for the LAPACKSupport namespace.
Doxygen does not pick up undocumented namespaces
David Wells [Tue, 3 Oct 2017 00:46:42 +0000 (20:46 -0400)]
Merge pull request #5186 from bangerth/doc-update-2
Update documentation of SparseMatrixEZ.
David Wells [Tue, 3 Oct 2017 00:28:04 +0000 (20:28 -0400)]
Merge pull request #5181 from bangerth/fix-exception-2
Make sure a destructor does not throw any exceptions.
David Wells [Tue, 3 Oct 2017 00:16:54 +0000 (20:16 -0400)]
Merge pull request #5187 from bangerth/empty-constructor
Use =default for an empty constructor.
Wolfgang Bangerth [Mon, 2 Oct 2017 22:21:14 +0000 (16:21 -0600)]
Use =default for an empty constructor.
Wolfgang Bangerth [Mon, 2 Oct 2017 22:16:50 +0000 (16:16 -0600)]
Update documentation of SparseMatrixEZ.
David Wells [Mon, 2 Oct 2017 18:52:51 +0000 (14:52 -0400)]
Merge pull request #5180 from bangerth/fix-exception
Catch exception by reference.
Wolfgang Bangerth [Mon, 2 Oct 2017 16:47:49 +0000 (10:47 -0600)]
A minor doc update to class CellID.
Wolfgang Bangerth [Mon, 2 Oct 2017 16:42:51 +0000 (10:42 -0600)]
Update a test.
Let the test produce more output to make debugging easier if something goes wrong.
Wolfgang Bangerth [Mon, 2 Oct 2017 16:33:57 +0000 (10:33 -0600)]
Make sure a destructor does not throw any exceptions.
Wolfgang Bangerth [Mon, 2 Oct 2017 16:28:21 +0000 (10:28 -0600)]
Catch exception by reference.
Copying is inefficient and, in this case, clearly unnecessary.
Wolfgang Bangerth [Mon, 2 Oct 2017 14:18:35 +0000 (08:18 -0600)]
Merge pull request #5177 from masterleinad/unused_vars
Silence warnings for unused parameters without LAPACK
Daniel Arndt [Mon, 2 Oct 2017 14:12:44 +0000 (16:12 +0200)]
Extend convert_generalized_support_point_values_to_dof_values for complex-valued types
Daniel Arndt [Mon, 2 Oct 2017 14:11:59 +0000 (16:11 +0200)]
Disable some Sundials functions for complex-valued PETSc
Daniel Arndt [Mon, 2 Oct 2017 13:42:14 +0000 (15:42 +0200)]
Merge pull request #5109 from davydden/interpolate_mg
facilitate transfer of fine-level solution to MG levels and test it with MappingQEulerian
Daniel Arndt [Mon, 2 Oct 2017 12:28:59 +0000 (14:28 +0200)]
Silence warnings for unused parameters without LAPACK
Luca Heltai [Mon, 2 Oct 2017 09:10:52 +0000 (11:10 +0200)]
Merge pull request #4729 from gassmoeller/add_particle_class
Add particle class
Daniel Arndt [Sun, 1 Oct 2017 18:15:07 +0000 (20:15 +0200)]
Changelog entry
Daniel Arndt [Sun, 1 Oct 2017 18:14:50 +0000 (20:14 +0200)]
Add tests
Daniel Arndt [Sun, 1 Oct 2017 20:53:10 +0000 (22:53 +0200)]
Allow to use MGTransferBlockMatrixFree with a separate DoFHandler for each block
Wolfgang Bangerth [Sun, 1 Oct 2017 22:03:42 +0000 (16:03 -0600)]
Simplify the logic during parallel::distributed mesh refinement.
Specifically, rather than let a function call itself recursively and catch that,
make sure we call the function of the base class right away.
Daniel Arndt [Sun, 1 Oct 2017 20:53:01 +0000 (22:53 +0200)]
Allow to use PreconditionMG with a separate DoFHandler for each block
Daniel Arndt [Sun, 1 Oct 2017 20:51:26 +0000 (22:51 +0200)]
Fix MatrixFreeOperators::Base::initialize_dof_vector
Denis Davydov [Fri, 29 Sep 2017 16:01:14 +0000 (18:01 +0200)]
parpack: add additional solve() which takes eigenvectors as pointers
Luca Heltai [Fri, 29 Sep 2017 13:28:11 +0000 (15:28 +0200)]
WB and DD comments.
Daniel Arndt [Thu, 28 Sep 2017 20:25:54 +0000 (22:25 +0200)]
Merge pull request #5170 from bangerth/fix-warning
Fix a warning about a missing return statement.
Wolfgang Bangerth [Thu, 28 Sep 2017 17:00:35 +0000 (11:00 -0600)]
Fix a warning about a missing return statement.
Denis Davydov [Thu, 28 Sep 2017 16:13:26 +0000 (18:13 +0200)]
Merge pull request #5154 from davydden/lapack_cholesky
extend LAPACKFullMatrix to do Cholesky, inverse of SPD, norms and con…
Daniel Arndt [Thu, 28 Sep 2017 16:12:46 +0000 (18:12 +0200)]
Merge pull request #5164 from bangerth/cleanups
Two small cleanups in the code that computes hanging node constraints.
Daniel Arndt [Thu, 28 Sep 2017 15:35:08 +0000 (17:35 +0200)]
Merge pull request #5168 from bangerth/doc-update
Properly qualify a function name.
Wolfgang Bangerth [Thu, 28 Sep 2017 15:30:29 +0000 (09:30 -0600)]
Merge pull request #5106 from luca-heltai/extract-used-vertices
GridTools::extract_used_vertices
Wolfgang Bangerth [Thu, 28 Sep 2017 15:29:06 +0000 (09:29 -0600)]
Properly qualify a function name.
Wolfgang Bangerth [Thu, 28 Sep 2017 15:28:03 +0000 (09:28 -0600)]
Merge pull request #5107 from eldarkh/fix-hp-rt-issues
More support for vector-valued hp FE spaces
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