]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
6 years agoDocument arguments in 'contrib/utilities/indent'. 6685/head
Wolfgang Bangerth [Mon, 28 May 2018 07:31:54 +0000 (15:31 +0800)]
Document arguments in 'contrib/utilities/indent'.

6 years agoUniformly use capital letters at the top of comments.
Wolfgang Bangerth [Mon, 28 May 2018 07:24:31 +0000 (15:24 +0800)]
Uniformly use capital letters at the top of comments.

6 years agoMerge pull request #6682 from masterleinad/fix_complex_petsc
Daniel Arndt [Sun, 27 May 2018 21:38:36 +0000 (23:38 +0200)]
Merge pull request #6682 from masterleinad/fix_complex_petsc

Fix undefined reference for PETSc complex scalar type

6 years agoFix undefined reference for PETSc complex scalar type 6682/head
Daniel Arndt [Sun, 27 May 2018 18:57:02 +0000 (20:57 +0200)]
Fix undefined reference for PETSc complex scalar type

6 years agoMerge pull request #6658 from tamiko/fix_openmp_detection
Daniel Arndt [Sun, 27 May 2018 17:22:54 +0000 (19:22 +0200)]
Merge pull request #6658 from tamiko/fix_openmp_detection

CMake: Fix openmp detection for Clang

6 years agoMerge pull request #6679 from tamiko/fix_indent
Denis Davydov [Sun, 27 May 2018 15:16:04 +0000 (17:16 +0200)]
Merge pull request #6679 from tamiko/fix_indent

Bugfix: Reindent indent and fix find invocation

6 years agoMerge pull request #6678 from davydden/doc/fix_nedelec_sz
Denis Davydov [Sun, 27 May 2018 12:48:41 +0000 (14:48 +0200)]
Merge pull request #6678 from davydden/doc/fix_nedelec_sz

fix unicode characters in fe_nedelec_sz.h

6 years agofix missing s 6678/head
Denis Davydov [Sun, 27 May 2018 11:45:32 +0000 (13:45 +0200)]
fix missing s

6 years agoreindent all .inst.in files 6679/head
Matthias Maier [Sun, 27 May 2018 09:30:37 +0000 (04:30 -0500)]
reindent all .inst.in files

6 years agoBugfix: Use a different sentinel in indent
Matthias Maier [Sun, 27 May 2018 09:28:39 +0000 (04:28 -0500)]
Bugfix: Use a different sentinel in indent

We cannot simply replace the escaped closing bracket "\}" by "} //" any
more. clang-format happily fixes the apparent misspelling into

  namespace Foobar
  {
  } // namespace Foobar

6 years agoBugfix: Reindent indent and fix find invocation
Matthias Maier [Sun, 27 May 2018 08:06:41 +0000 (03:06 -0500)]
Bugfix: Reindent indent and fix find invocation

6 years agoindentation
Denis Davydov [Sun, 27 May 2018 06:37:24 +0000 (08:37 +0200)]
indentation

6 years agouse HTML encodings
Denis Davydov [Sun, 27 May 2018 06:35:29 +0000 (08:35 +0200)]
use HTML encodings

6 years agofix unicode characters in fe_nedelec_sz.h
Denis Davydov [Sun, 27 May 2018 06:07:43 +0000 (08:07 +0200)]
fix unicode characters in fe_nedelec_sz.h

6 years agoMerge pull request #6665 from drwells/fix-write-gnuplot
Wolfgang Bangerth [Sat, 26 May 2018 00:47:08 +0000 (19:47 -0500)]
Merge pull request #6665 from drwells/fix-write-gnuplot

Fix write_gnuplot with Eulerian mappings.

6 years agoMerge pull request #6669 from bangerth/step-1
David Wells [Sat, 26 May 2018 00:12:34 +0000 (20:12 -0400)]
Merge pull request #6669 from bangerth/step-1

Add a reference to a video about debugging to step-1.

6 years agoMerge pull request #6671 from masterleinad/fix_separators
Daniel Arndt [Fri, 25 May 2018 18:33:42 +0000 (20:33 +0200)]
Merge pull request #6671 from masterleinad/fix_separators

Fix length of separators

6 years agoFix write_gnuplot with Eulerian mappings. 6665/head
David Wells [Fri, 25 May 2018 14:58:39 +0000 (10:58 -0400)]
Fix write_gnuplot with Eulerian mappings.

6 years agoMerge pull request #6662 from masterleinad/fix_complex_petsc
Daniel Arndt [Fri, 25 May 2018 15:48:25 +0000 (17:48 +0200)]
Merge pull request #6662 from masterleinad/fix_complex_petsc

Fix compiling with complex PETSc

6 years agoFix typo 6671/head
Daniel Arndt [Fri, 25 May 2018 15:37:48 +0000 (17:37 +0200)]
Fix typo

6 years agoMerge pull request #6602 from bangerth/doxygen
Daniel Arndt [Fri, 25 May 2018 15:10:07 +0000 (17:10 +0200)]
Merge pull request #6602 from bangerth/doxygen

Make sure the .inst files are available as inputs for doxygen.

6 years agoFix length of separators
Daniel Arndt [Fri, 25 May 2018 08:31:22 +0000 (10:31 +0200)]
Fix length of separators

6 years agoAdd comment 6662/head
Daniel Arndt [Fri, 25 May 2018 10:08:38 +0000 (12:08 +0200)]
Add comment

6 years agoFix compiling with complex PETSc
Daniel Arndt [Thu, 24 May 2018 13:22:00 +0000 (15:22 +0200)]
Fix compiling with complex PETSc

6 years agoMerge pull request #6667 from masterleinad/use_clang-format
Daniel Arndt [Fri, 25 May 2018 14:00:51 +0000 (16:00 +0200)]
Merge pull request #6667 from masterleinad/use_clang-format

Replace astyle by clang-format

6 years agoAdd a reference to a video about debugging to step-1. 6669/head
Wolfgang Bangerth [Mon, 21 May 2018 12:49:18 +0000 (20:49 +0800)]
Add a reference to a video about debugging to step-1.

6 years agoMerge pull request #6668 from bangerth/step-6
Denis Davydov [Fri, 25 May 2018 11:27:36 +0000 (13:27 +0200)]
Merge pull request #6668 from bangerth/step-6

Add pictures to the discussion in step-6.

6 years agoAdd figures to the discussion in step-6. 6668/head
Wolfgang Bangerth [Fri, 25 May 2018 11:12:32 +0000 (19:12 +0800)]
Add figures to the discussion in step-6.

6 years agoApply clang-format 6667/head
Daniel Arndt [Fri, 25 May 2018 07:59:56 +0000 (09:59 +0200)]
Apply clang-format

6 years agoDon't break after return types in examples
Daniel Arndt [Fri, 25 May 2018 07:48:37 +0000 (09:48 +0200)]
Don't break after return types in examples

6 years agoChangelog entry
Daniel Arndt [Thu, 24 May 2018 21:30:25 +0000 (23:30 +0200)]
Changelog entry

6 years agoRemove astyle
Daniel Arndt [Thu, 24 May 2018 21:19:36 +0000 (23:19 +0200)]
Remove astyle

6 years agoMake the indenting script and CI use clang-format
Daniel Arndt [Sun, 20 May 2018 15:21:29 +0000 (17:21 +0200)]
Make the indenting script and CI use clang-format

6 years agoMerge pull request #6659 from kronbichler/implement_update_ghosts_blocked
Denis Davydov [Fri, 25 May 2018 00:29:14 +0000 (02:29 +0200)]
Merge pull request #6659 from kronbichler/implement_update_ghosts_blocked

Make matrix-free loop aware of block vectors with many blocks

6 years agoMerge pull request #6656 from masterleinad/fix_failing_clang_format_tests
Matthias Maier [Thu, 24 May 2018 23:17:57 +0000 (18:17 -0500)]
Merge pull request #6656 from masterleinad/fix_failing_clang_format_tests

Fix failing test after applying clang-format

6 years agoMerge pull request #6648 from bangerth/step-6
David Wells [Thu, 24 May 2018 17:26:33 +0000 (13:26 -0400)]
Merge pull request #6648 from bangerth/step-6

More changes to the introduction of step-6.

6 years agoMerge pull request #6650 from masterleinad/update_clang_format_style_file
Matthias Maier [Thu, 24 May 2018 17:13:06 +0000 (12:13 -0500)]
Merge pull request #6650 from masterleinad/update_clang_format_style_file

Update clang-format style file

6 years agoUpdate the .clang-format files with options agreed on 6650/head
Daniel Arndt [Sun, 20 May 2018 15:20:55 +0000 (17:20 +0200)]
Update the .clang-format files with options agreed on

6 years agoCMake: Fix openmpi detection for Clang 6658/head
Matthias Maier [Thu, 24 May 2018 02:49:19 +0000 (21:49 -0500)]
CMake: Fix openmpi detection for Clang

Well, now that Clang has reached the version range of XCode, this cludge
obviously doesn't work any more. (Remember both compiler call themselves
"clang", but Apple insists on a different versioning scheme *sigh*).

Simply remove the version constaints for Clang. If someone hits an issue
with XCode. Well update your compiler to any version younger than 2
years, thanks.

6 years agoAdd missing header in petsc_complex/assemble_01 6656/head
Daniel Arndt [Thu, 24 May 2018 13:01:13 +0000 (15:01 +0200)]
Add missing header in petsc_complex/assemble_01

6 years agoInclude tests.h instead
Daniel Arndt [Wed, 23 May 2018 21:51:26 +0000 (23:51 +0200)]
Include tests.h instead

6 years agoMake sure to be in namepace dealii in tests/test_grids.h
Daniel Arndt [Wed, 23 May 2018 17:37:37 +0000 (19:37 +0200)]
Make sure to  be in namepace dealii in tests/test_grids.h

6 years agoRemove petscerror.h
Daniel Arndt [Wed, 23 May 2018 17:36:52 +0000 (19:36 +0200)]
Remove petscerror.h

6 years agoFix base/slice_vector
Daniel Arndt [Thu, 24 May 2018 11:42:46 +0000 (13:42 +0200)]
Fix base/slice_vector

6 years agoChangelog. 6659/head
Martin Kronbichler [Thu, 24 May 2018 11:18:30 +0000 (13:18 +0200)]
Changelog.

6 years agoAdd test for the new feature.
Martin Kronbichler [Thu, 24 May 2018 11:11:18 +0000 (13:11 +0200)]
Add test for the new feature.

6 years agoMinor.
Martin Kronbichler [Thu, 24 May 2018 11:10:50 +0000 (13:10 +0200)]
Minor.

6 years agoDo call plain update_ghost_values()/compress() for block vector with many blocks.
Martin Kronbichler [Thu, 24 May 2018 11:10:10 +0000 (13:10 +0200)]
Do call plain update_ghost_values()/compress() for block vector with many blocks.

6 years agoMake LA::d::BlockVector::communication_block_size public.
Martin Kronbichler [Thu, 24 May 2018 11:09:35 +0000 (13:09 +0200)]
Make LA::d::BlockVector::communication_block_size public.

6 years agoMerge pull request #6632 from drwells/gnuplot-compression-1
Wolfgang Bangerth [Thu, 24 May 2018 05:08:07 +0000 (00:08 -0500)]
Merge pull request #6632 from drwells/gnuplot-compression-1

Gnuplot compression 1

6 years agoMerge pull request #6657 from bangerth/step-47
David Wells [Thu, 24 May 2018 00:56:23 +0000 (20:56 -0400)]
Merge pull request #6657 from bangerth/step-47

Remove the never finished step-47.

6 years agoRemove the never finished step-47. 6657/head
Wolfgang Bangerth [Wed, 23 May 2018 22:35:23 +0000 (06:35 +0800)]
Remove the never finished step-47.

We started this program in 2012, but it was never finished and there is no plan to
ever do so. A paper on the topic using deal.II has also been published in the
meantime:
    Carraro, Wetterauer: On the implementation of the eXtended Finite Element Method (XFEM) for interface problems
    Archive of Numerical Software, vol. 4, no. 2.

6 years agoMerge pull request #6654 from masterleinad/avoid_1d_arrays
Daniel Arndt [Wed, 23 May 2018 17:32:45 +0000 (19:32 +0200)]
Merge pull request #6654 from masterleinad/avoid_1d_arrays

Avoid using one-dimensional arrays in place of multi-dimensional ones

6 years agoAvoid using one-dimensional arrays in place of multi-dimensional ones 6654/head
Daniel Arndt [Wed, 23 May 2018 12:42:30 +0000 (14:42 +0200)]
Avoid using one-dimensional arrays in place of multi-dimensional ones

6 years agoMerge pull request #6651 from masterleinad/remove_petsc_include
Wolfgang Bangerth [Wed, 23 May 2018 12:20:15 +0000 (07:20 -0500)]
Merge pull request #6651 from masterleinad/remove_petsc_include

Remove unnecessary PETSc include file

6 years agoMerge pull request #6653 from masterleinad/restrict_progress_bar
Wolfgang Bangerth [Wed, 23 May 2018 12:16:46 +0000 (07:16 -0500)]
Merge pull request #6653 from masterleinad/restrict_progress_bar

Only use progress bar in wget if available

6 years agoMerge pull request #6652 from masterleinad/unused_variables_cxx17
Daniel Arndt [Wed, 23 May 2018 12:04:09 +0000 (14:04 +0200)]
Merge pull request #6652 from masterleinad/unused_variables_cxx17

Fix warning for unused variables in CXX17 mode

6 years agoOnly use progress bar in wget if available 6653/head
Daniel Arndt [Wed, 23 May 2018 11:35:21 +0000 (13:35 +0200)]
Only use progress bar in wget if available

6 years agoMerge pull request #6645 from bangerth/step-2
Daniel Arndt [Wed, 23 May 2018 08:38:59 +0000 (10:38 +0200)]
Merge pull request #6645 from bangerth/step-2

No longer mark the finite element as 'static' in step-2.

6 years agoFix warning for unused variables in CXX17 mode 6652/head
Daniel Arndt [Wed, 23 May 2018 08:01:27 +0000 (10:01 +0200)]
Fix warning for unused variables in CXX17 mode

6 years agoRemove unnecessary PETSc include file 6651/head
Daniel Arndt [Wed, 23 May 2018 08:03:06 +0000 (10:03 +0200)]
Remove unnecessary PETSc include file

6 years agoMerge pull request #6106 from alexrobomind/petsc_multigrid
Martin Kronbichler [Wed, 23 May 2018 07:39:20 +0000 (09:39 +0200)]
Merge pull request #6106 from alexrobomind/petsc_multigrid

Support for PETSc in MGTransferPrebuilt (multigrid)

6 years agoMerge pull request #6649 from bangerth/step-4
David Wells [Tue, 22 May 2018 20:21:21 +0000 (16:21 -0400)]
Merge pull request #6649 from bangerth/step-4

Fix more wonky indentation (this time in step-4).

6 years agoMerge pull request #6630 from gassmoeller/fix_mapping_q_eulerian_parallel_vertices
Daniel Arndt [Tue, 22 May 2018 19:55:48 +0000 (21:55 +0200)]
Merge pull request #6630 from gassmoeller/fix_mapping_q_eulerian_parallel_vertices

Fix `extract_used_vertices` for calls with distributed MappingQEulerian

6 years agoFix more wonky indentation (this time in step-4). 6649/head
Wolfgang Bangerth [Tue, 22 May 2018 16:37:25 +0000 (00:37 +0800)]
Fix more wonky indentation (this time in step-4).

6 years agoMore changes to the introduction of step-6. 6648/head
Wolfgang Bangerth [Tue, 22 May 2018 16:31:27 +0000 (00:31 +0800)]
More changes to the introduction of step-6.

6 years agoNo longer mark the finite element as 'static' in step-2. 6645/head
Wolfgang Bangerth [Tue, 22 May 2018 15:27:31 +0000 (23:27 +0800)]
No longer mark the finite element as 'static' in step-2.

This is not necessary any more since the DoFHandler copies the FE instead of storing
a reference to it. This also allows to remove a good deal of commentary that is
completely obscure to anyone not familiar with C++.

6 years agoMerge pull request #6428 from marcfehling/pack_compression_choice
Wolfgang Bangerth [Tue, 22 May 2018 15:02:59 +0000 (10:02 -0500)]
Merge pull request #6428 from marcfehling/pack_compression_choice

Introduce option to force no compression in pack/unpack.

6 years agoMerge pull request #6639 from masterleinad/restrict_c++17_check
Wolfgang Bangerth [Tue, 22 May 2018 15:00:37 +0000 (10:00 -0500)]
Merge pull request #6639 from masterleinad/restrict_c++17_check

Restrict C++17 check

6 years agoFix a grammar mistaks. 6630/head
Wolfgang Bangerth [Tue, 22 May 2018 14:58:12 +0000 (09:58 -0500)]
Fix a grammar mistaks.

6 years agoMerge pull request #6636 from adamqc/fix-step-16
Daniel Arndt [Tue, 22 May 2018 09:31:06 +0000 (11:31 +0200)]
Merge pull request #6636 from adamqc/fix-step-16

Fix step-16.

6 years agoMerge pull request #6644 from drwells/more-freedoms-to-freedom
Daniel Arndt [Tue, 22 May 2018 08:00:58 +0000 (10:00 +0200)]
Merge pull request #6644 from drwells/more-freedoms-to-freedom

Fix a few more instances of 'freedoms'

6 years agoMerge pull request #6643 from bangerth/doc-update-7
David Wells [Tue, 22 May 2018 02:01:01 +0000 (22:01 -0400)]
Merge pull request #6643 from bangerth/doc-update-7

Fix a typo (twice) live in front of 60 students.

6 years agoFix a few more instances of 'freedoms' 6644/head
David Wells [Tue, 22 May 2018 01:59:28 +0000 (21:59 -0400)]
Fix a few more instances of 'freedoms'

Since 'degrees' is already plural 'freedom' should not be.

6 years agoFix a typo (twice) live in front of 60 students. 6643/head
Wolfgang Bangerth [Tue, 22 May 2018 01:39:10 +0000 (09:39 +0800)]
Fix a typo (twice) live in front of 60 students.

6 years agoMerge pull request #6641 from bangerth/step-6
David Wells [Tue, 22 May 2018 01:04:52 +0000 (21:04 -0400)]
Merge pull request #6641 from bangerth/step-6

Add some background material about AMR to step-6.

6 years agoMerge pull request #6642 from bangerth/step-51
David Wells [Tue, 22 May 2018 00:51:57 +0000 (20:51 -0400)]
Merge pull request #6642 from bangerth/step-51

Satsfy my OCD.

6 years agoAdd some background material about AMR to step-6. 6641/head
Wolfgang Bangerth [Mon, 21 May 2018 15:31:38 +0000 (23:31 +0800)]
Add some background material about AMR to step-6.

6 years agoSatsfy my OCD. 6642/head
Wolfgang Bangerth [Tue, 22 May 2018 00:47:29 +0000 (08:47 +0800)]
Satsfy my OCD.

6 years agoUpdate documentation
Rene Gassmoeller [Mon, 21 May 2018 18:38:01 +0000 (11:38 -0700)]
Update documentation

6 years agoAdded support for PETSc in MGTransferPrebuilt, internal::MatrixSelector (mg_transfer... 6106/head
Alexander Knieps [Sun, 4 Mar 2018 19:52:34 +0000 (20:52 +0100)]
Added support for PETSc in MGTransferPrebuilt, internal::MatrixSelector (mg_transfer.h), Removed local_columns.n_elements() > 0 assertion in PETScWrappers::MPI::SparseMatrix

6 years agoMerge pull request #6640 from bangerth/step-45
David Wells [Mon, 21 May 2018 14:14:02 +0000 (10:14 -0400)]
Merge pull request #6640 from bangerth/step-45

Make clear in the program that we omit significant parts of step-45.

6 years agoMake clear in the program that we omit significant parts of step-45. 6640/head
Wolfgang Bangerth [Mon, 21 May 2018 12:53:34 +0000 (20:53 +0800)]
Make clear in the program that we omit significant parts of step-45.

6 years agoRestrict C++17 check 6639/head
Daniel Arndt [Sun, 20 May 2018 23:49:02 +0000 (01:49 +0200)]
Restrict C++17 check

6 years agoFix step-16. 6636/head
Ce Qin [Sun, 20 May 2018 14:43:31 +0000 (22:43 +0800)]
Fix step-16.

6 years agoAdd another GNUPLOT test. 6632/head
David Wells [Sat, 19 May 2018 17:00:34 +0000 (13:00 -0400)]
Add another GNUPLOT test.

6 years agoFix some bugs with codim = 1 GNUPLOT output.
David Wells [Sat, 19 May 2018 16:59:15 +0000 (12:59 -0400)]
Fix some bugs with codim = 1 GNUPLOT output.

6 years agoUpdate tests to reflect the compression algorithm.
David Wells [Mon, 14 May 2018 21:29:00 +0000 (17:29 -0400)]
Update tests to reflect the compression algorithm.

6 years agoAvoid writing colinear points in GridOut::write_gnuplot.
David Wells [Sun, 29 Apr 2018 18:08:50 +0000 (14:08 -0400)]
Avoid writing colinear points in GridOut::write_gnuplot.

GridOut::write_gnuplot has an option where, for plotting curved grids, it can
plot multiple line segments per face to give the illusion of a cell with curved
faces. This procedure creates massive output files since every face of every
corresponds to many individual line segments.

This commit implements a compression scheme where we do not output intermediate
points that are colinear. This lowers the number of points in a polar grid
output file by about 50% (i.e., the radial cell faces are not curved and can be
plotted with two points instead of perhaps five or six; same for the interior
cell faces).

6 years agoMerge pull request #6635 from bangerth/use-wget
Daniel Arndt [Sun, 20 May 2018 19:55:59 +0000 (21:55 +0200)]
Merge pull request #6635 from bangerth/use-wget

Use wget instead of curl.

6 years agoMerge pull request #6631 from masterleinad/fix_hp_flux_sparsity
Wolfgang Bangerth [Sun, 20 May 2018 15:22:43 +0000 (10:22 -0500)]
Merge pull request #6631 from masterleinad/fix_hp_flux_sparsity

Fix make_flux_sparsity_pattern for hp::DoFHandler

6 years agoSimplify DoFTools::make_flux_sparsity_pattern and test more cases 6631/head
Daniel Arndt [Sun, 20 May 2018 11:33:44 +0000 (13:33 +0200)]
Simplify DoFTools::make_flux_sparsity_pattern and test more cases

6 years agoMerge pull request #6619 from bangerth/doc-update-6
Daniel Arndt [Sun, 20 May 2018 13:08:17 +0000 (15:08 +0200)]
Merge pull request #6619 from bangerth/doc-update-6

Better document the introduction of step-45.

6 years agoUse wget instead of curl. 6635/head
Wolfgang Bangerth [Sun, 20 May 2018 08:27:08 +0000 (16:27 +0800)]
Use wget instead of curl.

Also show a progress bar for the download, but be otherwise quiet.

6 years agoMerge pull request #6614 from tamiko/add-clang-format
David Wells [Sat, 19 May 2018 19:45:19 +0000 (15:45 -0400)]
Merge pull request #6614 from tamiko/add-clang-format

Contrib: Add a scripts to compile/download clang-format

6 years agoupdate hash 6614/head
Matthias Maier [Sat, 19 May 2018 18:37:09 +0000 (13:37 -0500)]
update hash

6 years agoAdd test case and changelog entry
Daniel Arndt [Sat, 19 May 2018 18:21:15 +0000 (20:21 +0200)]
Add test case and changelog entry

6 years agoUpdate the GNUPlot flags.
David Wells [Fri, 18 May 2018 15:20:06 +0000 (11:20 -0400)]
Update the GNUPlot flags.

This commit fixes two intertwined issues with the current set of flags:
1. The variable names and descriptions are written in a way that implies
only boundary lines can be curved (which is no longer true). This commit
renames n_boundary_face_points to n_curved_line_points to make this
clearer.
2. write_gnuplot currently writes a lot of extra lines for boundary
faces in 3D and there is no way to turn this off. I would like to use
this function to generate wireframes of meshes, so I do not want this
extra output. I added a boolean (defaults to true) that controls whether
or not these extra lines are plotted.

6 years agoWork around using shallow-since if not available
Daniel Arndt [Sat, 19 May 2018 12:46:20 +0000 (14:46 +0200)]
Work around using shallow-since if not available

6 years agofix typos
Matthias Maier [Thu, 17 May 2018 20:51:40 +0000 (15:51 -0500)]
fix typos


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