]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
3 years agoPass optional arguments to MGLevelObject 10964/head
Peter Munch [Thu, 24 Sep 2020 14:19:58 +0000 (16:19 +0200)]
Pass optional arguments to MGLevelObject

3 years agoMerge pull request #10953 from tjhei/doxygen_subscriptor
Wolfgang Bangerth [Thu, 24 Sep 2020 13:01:30 +0000 (07:01 -0600)]
Merge pull request #10953 from tjhei/doxygen_subscriptor

doxygen: put subscriptor function into group

3 years agoMerge pull request #10960 from bangerth/29
Peter Munch [Thu, 24 Sep 2020 04:57:19 +0000 (06:57 +0200)]
Merge pull request #10960 from bangerth/29

Avoid use of deallog in step-29.

3 years agoMerge pull request #10955 from kronbichler/fix_fe_face_evaluation_read
Peter Munch [Thu, 24 Sep 2020 04:56:26 +0000 (06:56 +0200)]
Merge pull request #10955 from kronbichler/fix_fe_face_evaluation_read

Fix bug in multi-component FEFaceEvaluation::gather_evaluate

3 years agoMerge pull request #10954 from kronbichler/fix_mf_template
Peter Munch [Thu, 24 Sep 2020 04:55:59 +0000 (06:55 +0200)]
Merge pull request #10954 from kronbichler/fix_mf_template

FEFaceEvaluation: Fix fast vector access case of gather_evaluate

3 years agoMerge pull request #10959 from bangerth/logstream
Bruno Turcksin [Thu, 24 Sep 2020 01:29:41 +0000 (21:29 -0400)]
Merge pull request #10959 from bangerth/logstream

3 years agoMerge pull request #10961 from bangerth/changelog
Bruno Turcksin [Thu, 24 Sep 2020 01:23:07 +0000 (21:23 -0400)]
Merge pull request #10961 from bangerth/changelog

Rename a changelog entry.

3 years agoRename a changelog entry. 10961/head
Wolfgang Bangerth [Thu, 24 Sep 2020 00:17:26 +0000 (18:17 -0600)]
Rename a changelog entry.

I must have been in the wrong place with my finger when writing it.

3 years agoAdd a changelog entry. 10960/head
Wolfgang Bangerth [Thu, 24 Sep 2020 00:12:16 +0000 (18:12 -0600)]
Add a changelog entry.

3 years agoAvoid use of deallog in step-29.
Wolfgang Bangerth [Thu, 24 Sep 2020 00:10:42 +0000 (18:10 -0600)]
Avoid use of deallog in step-29.

In the process, make the output more readable since we can avoid the obscuring
prefix that doesn't actually provide any kind of information.

3 years agoClarify documentation. 10959/head
Wolfgang Bangerth [Wed, 23 Sep 2020 23:50:56 +0000 (17:50 -0600)]
Clarify documentation.

3 years agoDon't even mention logstream in step-4.
Wolfgang Bangerth [Wed, 23 Sep 2020 23:50:19 +0000 (17:50 -0600)]
Don't even mention logstream in step-4.

The only place where we do is to set the depth of output to zero, but that is already
the default.

3 years agoMerge pull request #10952 from kronbichler/fix_step-68
Peter Munch [Wed, 23 Sep 2020 21:12:35 +0000 (23:12 +0200)]
Merge pull request #10952 from kronbichler/fix_step-68

step-68: A few updates to documentation + slight code cleanup

3 years agoFix bug in multi-component FEFaceEvaluation::gather_evaluate 10955/head
Martin Kronbichler [Wed, 23 Sep 2020 16:27:16 +0000 (18:27 +0200)]
Fix bug in multi-component FEFaceEvaluation::gather_evaluate

3 years agoNew test cases 10954/head
Martin Kronbichler [Wed, 23 Sep 2020 15:44:31 +0000 (17:44 +0200)]
New test cases

3 years agoFix fast vector access case of FEFaceEvaluation
Martin Kronbichler [Wed, 23 Sep 2020 15:44:16 +0000 (17:44 +0200)]
Fix fast vector access case of FEFaceEvaluation

3 years agoSeveral improvements to step-68: 10952/head
Martin Kronbichler [Wed, 23 Sep 2020 13:55:34 +0000 (15:55 +0200)]
Several improvements to step-68:

- Consistently use mapping object of the class itself
- Use MappingQ1 rather than MappingQ because the latter class is somewhat brittle
- Only set up background dofs for the case of interpolated_velocity
- Do not call Utilities::MPI::this_mpi_rank in inner loop

3 years agoImprove wording in some comments
Martin Kronbichler [Wed, 23 Sep 2020 13:53:33 +0000 (15:53 +0200)]
Improve wording in some comments

3 years agoMerge pull request #10956 from peterrum/simlex_test
Martin Kronbichler [Wed, 23 Sep 2020 19:19:15 +0000 (21:19 +0200)]
Merge pull request #10956 from peterrum/simlex_test

Fix simplex test failure

3 years agoFix simplex test failure 10956/head
Peter Munch [Wed, 23 Sep 2020 17:21:06 +0000 (19:21 +0200)]
Fix simplex test failure

3 years agodoxygen: put subscriptor function into group 10953/head
Timo Heister [Wed, 23 Sep 2020 14:49:23 +0000 (10:49 -0400)]
doxygen: put subscriptor function into group

These functions now appear (see #10914) in each derived class like
SparsityPattern. Provide a heading for these functions.

3 years agoMerge pull request #10914 from tjhei/doxygen_show_inherited
Daniel Arndt [Wed, 23 Sep 2020 13:04:26 +0000 (09:04 -0400)]
Merge pull request #10914 from tjhei/doxygen_show_inherited

doxygen: enable showing inherited members

3 years agoMerge pull request #10946 from peterrum/n_face_orientations
Martin Kronbichler [Wed, 23 Sep 2020 12:46:04 +0000 (14:46 +0200)]
Merge pull request #10946 from peterrum/n_face_orientations

Remove n_face_orientations template argument within FEEvaluation

3 years agoWork on warning 10946/head
Peter Munch [Wed, 23 Sep 2020 11:24:34 +0000 (13:24 +0200)]
Work on warning

3 years agoMerge pull request #10926 from tamiko/fix-step-69
Martin Kronbichler [Wed, 23 Sep 2020 11:17:36 +0000 (13:17 +0200)]
Merge pull request #10926 from tamiko/fix-step-69

step-69: Remove boundary c_ij fix

3 years agoRemove n_face_orientations template argument within FEEvaluation
Peter Munch [Tue, 22 Sep 2020 06:33:15 +0000 (08:33 +0200)]
Remove n_face_orientations template argument within FEEvaluation

Conflicts:
include/deal.II/matrix_free/evaluation_kernels.h

3 years agoMerge pull request #10951 from peterrum/namespace
Peter Munch [Wed, 23 Sep 2020 05:33:21 +0000 (07:33 +0200)]
Merge pull request #10951 from peterrum/namespace

Specify namespace

3 years agoModified dox and cc. Now they are consistent. 10926/head
Ignacio Tomas (-EXP) [Wed, 23 Sep 2020 03:51:29 +0000 (21:51 -0600)]
Modified dox and cc. Now they are consistent.

3 years agoMerge pull request #10942 from kronbichler/improve_step_19
Bruno Turcksin [Wed, 23 Sep 2020 00:39:52 +0000 (20:39 -0400)]
Merge pull request #10942 from kronbichler/improve_step_19

[step-19] Correct & simplify some computations

3 years agoMerge pull request #10950 from masterleinad/fix_clang_tidy
Peter Munch [Tue, 22 Sep 2020 20:36:25 +0000 (22:36 +0200)]
Merge pull request #10950 from masterleinad/fix_clang_tidy

Fix clang-tidy complains

3 years agoSpecify namespace 10951/head
Peter Munch [Tue, 22 Sep 2020 20:33:17 +0000 (22:33 +0200)]
Specify namespace

3 years agoMerge pull request #10840 from rezarastak/improve_step52_timestep
Matthias Maier [Tue, 22 Sep 2020 18:45:23 +0000 (13:45 -0500)]
Merge pull request #10840 from rezarastak/improve_step52_timestep

Use DiscreteTime in step-52

3 years agoMerge pull request #10887 from elauksap/simplex_hdf5_workflow
Matthias Maier [Tue, 22 Sep 2020 18:42:30 +0000 (13:42 -0500)]
Merge pull request #10887 from elauksap/simplex_hdf5_workflow

Use HDF5 for testing simplex workflows

3 years agoMerge pull request #10886 from elauksap/simplex_hdf5_parallel
Matthias Maier [Tue, 22 Sep 2020 18:38:52 +0000 (13:38 -0500)]
Merge pull request #10886 from elauksap/simplex_hdf5_parallel

Test for HDF5 now runs in parallel

3 years agoFix clang-tidy complains 10950/head
Daniel Arndt [Tue, 22 Sep 2020 18:33:09 +0000 (14:33 -0400)]
Fix clang-tidy complains

3 years agoMerge pull request #10927 from kronbichler/fix_9794
Timo Heister [Tue, 22 Sep 2020 15:49:20 +0000 (11:49 -0400)]
Merge pull request #10927 from kronbichler/fix_9794

Provide more general factory class for FEEvaluation

3 years agoMerge pull request #10949 from masterleinad/replace_restrict
Martin Kronbichler [Tue, 22 Sep 2020 14:42:13 +0000 (16:42 +0200)]
Merge pull request #10949 from masterleinad/replace_restrict

Replace __restrict by DEAL_II_RESTRICT

3 years agoMerge pull request #10944 from masterleinad/fix_compiling_with_icc
David Wells [Tue, 22 Sep 2020 14:09:47 +0000 (10:09 -0400)]
Merge pull request #10944 from masterleinad/fix_compiling_with_icc

Fix comping with ICC

3 years agoMerge pull request #10948 from lethe-cfd/fix_step_68_animations
Daniel Arndt [Tue, 22 Sep 2020 13:34:49 +0000 (09:34 -0400)]
Merge pull request #10948 from lethe-cfd/fix_step_68_animations

3 years agoReplace __restrict by DEAL_II_RESTRICT 10949/head
Daniel Arndt [Tue, 22 Sep 2020 13:00:56 +0000 (09:00 -0400)]
Replace __restrict by DEAL_II_RESTRICT

3 years agoFixed height 10948/head
Bruno [Tue, 22 Sep 2020 11:40:05 +0000 (07:40 -0400)]
Fixed height

3 years agoFixed the youtube links for the three animations in step-68
Bruno [Tue, 22 Sep 2020 11:38:36 +0000 (07:38 -0400)]
Fixed the youtube links for the three animations in step-68

3 years agoMerge pull request #10417 from peterrum/mg-transfer
Martin Kronbichler [Tue, 22 Sep 2020 10:39:18 +0000 (12:39 +0200)]
Merge pull request #10417 from peterrum/mg-transfer

Add inter-grid transfer operators

3 years agoMerge pull request #10915 from zjiaqi2018/step50_err_estimator
Peter Munch [Tue, 22 Sep 2020 10:37:11 +0000 (12:37 +0200)]
Merge pull request #10915 from zjiaqi2018/step50_err_estimator

step-50: fix the error estimator

3 years agoAdd documentation 10927/head
Martin Kronbichler [Tue, 22 Sep 2020 09:52:58 +0000 (11:52 +0200)]
Add documentation

3 years agoAdd inter-grid transfer operators 10417/head
Peter Munch [Wed, 25 Dec 2019 20:38:07 +0000 (21:38 +0100)]
Add inter-grid transfer operators

3 years agoClean up some parts of tutorial 10942/head
Martin Kronbichler [Mon, 21 Sep 2020 13:43:40 +0000 (15:43 +0200)]
Clean up some parts of tutorial

3 years agoFix comping with ICC 10944/head
Daniel Arndt [Sun, 20 Sep 2020 12:29:32 +0000 (08:29 -0400)]
Fix comping with ICC

3 years agoMerge pull request #10940 from drwells/cleanup-quadrature
Wolfgang Bangerth [Tue, 22 Sep 2020 00:25:06 +0000 (18:25 -0600)]
Merge pull request #10940 from drwells/cleanup-quadrature

Cleanup quadrature

3 years agoMerge pull request #10943 from bangerth/typo
Daniel Arndt [Tue, 22 Sep 2020 00:03:17 +0000 (20:03 -0400)]
Merge pull request #10943 from bangerth/typo

Fix 'and and' -> 'and'.

3 years agoFix 'and and' -> 'and'. 10943/head
Wolfgang Bangerth [Mon, 21 Sep 2020 22:53:51 +0000 (16:53 -0600)]
Fix 'and and' -> 'and'.

3 years agoCleanup the header inclusions. 10940/head
David Wells [Sun, 20 Sep 2020 17:19:48 +0000 (13:19 -0400)]
Cleanup the header inclusions.

3 years agoReflow some comments.
David Wells [Sun, 20 Sep 2020 17:19:42 +0000 (13:19 -0400)]
Reflow some comments.

3 years agoRemove some commented-out code.
David Wells [Sun, 20 Sep 2020 17:12:47 +0000 (13:12 -0400)]
Remove some commented-out code.

We changed this code to assume the base quadrature is already set up in
e4b860bbba680a002d5fd80035cff71ec39708eb.

3 years agoAdd another explicit dim 0 instantiation.
David Wells [Sun, 20 Sep 2020 17:11:39 +0000 (13:11 -0400)]
Add another explicit dim 0 instantiation.

This gets around a GCC -Wtype-limits warning in the loop when dim = 0.

3 years agoTest for HDF5 now runs in parallel 10886/head
Pasquale Africa [Thu, 3 Sep 2020 12:53:09 +0000 (12:53 +0000)]
Test for HDF5 now runs in parallel

3 years agoUse HDF5 for testing simplex workflows 10887/head
Pasquale Africa [Thu, 3 Sep 2020 14:40:55 +0000 (14:40 +0000)]
Use HDF5 for testing simplex workflows

4 years agoChangelog
Martin Kronbichler [Mon, 21 Sep 2020 08:41:50 +0000 (10:41 +0200)]
Changelog

4 years agoRemove obsolete code
Martin Kronbichler [Mon, 21 Sep 2020 08:41:26 +0000 (10:41 +0200)]
Remove obsolete code

4 years agoNew test cases for CellwiseInverseMassMatrix<dim,-1>
Martin Kronbichler [Mon, 21 Sep 2020 07:58:07 +0000 (09:58 +0200)]
New test cases for CellwiseInverseMassMatrix<dim,-1>

4 years agoConvert a few tests to template parameter -1
Martin Kronbichler [Mon, 21 Sep 2020 07:55:02 +0000 (09:55 +0200)]
Convert a few tests to template parameter -1

4 years agoMerge pull request #10937 from peterrum/pft_manifold
Daniel Arndt [Mon, 21 Sep 2020 02:39:51 +0000 (22:39 -0400)]
Merge pull request #10937 from peterrum/pft_manifold

Add note to Triangulation::create_triangulation

4 years agoMerge pull request #10930 from bangerth/code-gallery
Timo Heister [Sun, 20 Sep 2020 17:30:27 +0000 (13:30 -0400)]
Merge pull request #10930 from bangerth/code-gallery

Also install missing files from the code gallery.

4 years agoMerge pull request #10938 from masterleinad/fix_gcc-10-warnings
Timo Heister [Sun, 20 Sep 2020 17:29:38 +0000 (13:29 -0400)]
Merge pull request #10938 from masterleinad/fix_gcc-10-warnings

Fix some more gcc-10 warnings

4 years agoFix some more gcc-10 warnings 10938/head
Daniel Arndt [Sun, 20 Sep 2020 12:29:32 +0000 (08:29 -0400)]
Fix some more gcc-10 warnings

4 years agoMerge pull request #10936 from masterleinad/fix_scalapack_test_again
Peter Munch [Sun, 20 Sep 2020 08:27:24 +0000 (10:27 +0200)]
Merge pull request #10936 from masterleinad/fix_scalapack_test_again

Fix SCALAPACK tests again

4 years agoAdd note to Triangulation::create_triangulation 10937/head
Peter Munch [Sun, 20 Sep 2020 08:15:13 +0000 (10:15 +0200)]
Add note to Triangulation::create_triangulation

4 years agoshow less results 10915/head
Jiaqi Zhang [Tue, 15 Sep 2020 15:51:34 +0000 (11:51 -0400)]
show less results

4 years agoprint error estimate and update screen output
Jiaqi Zhang [Tue, 15 Sep 2020 00:09:01 +0000 (20:09 -0400)]
print error estimate and update screen output

4 years agofix the error estimator
Jiaqi Zhang [Mon, 14 Sep 2020 15:30:02 +0000 (11:30 -0400)]
fix the error estimator

4 years agoFix SCALAPACK tests again 10936/head
Daniel Arndt [Sun, 20 Sep 2020 02:32:31 +0000 (22:32 -0400)]
Fix SCALAPACK tests again

4 years agoMerge pull request #10898 from bangerth/cc
David Wells [Sat, 19 Sep 2020 22:16:22 +0000 (18:16 -0400)]
Merge pull request #10898 from bangerth/cc

Mention Code Complete as a resource.

4 years agoMerge pull request #10935 from masterleinad/deprecated_parallel_triangulation
Peter Munch [Sat, 19 Sep 2020 19:33:14 +0000 (21:33 +0200)]
Merge pull request #10935 from masterleinad/deprecated_parallel_triangulation

Avoid gcc-10 warning about deprecated parallel::Triangulation

4 years agoAvoid gcc-10 warning about deprecated parallel::Triangulation 10935/head
Daniel Arndt [Sat, 19 Sep 2020 16:12:11 +0000 (12:12 -0400)]
Avoid gcc-10 warning about deprecated parallel::Triangulation

4 years agoExclude cmake-generated files. 10930/head
Wolfgang Bangerth [Fri, 18 Sep 2020 21:27:00 +0000 (15:27 -0600)]
Exclude cmake-generated files.

4 years agoMerge pull request #10308 from lethe-cfd/particle_advection_step
David Wells [Fri, 18 Sep 2020 16:07:32 +0000 (12:07 -0400)]
Merge pull request #10308 from lethe-cfd/particle_advection_step

Step-68 : Particle tracking of a massless tracer in a vortical flow

4 years agoAdd inverse mass matrix with degree -1
Martin Kronbichler [Fri, 18 Sep 2020 15:10:38 +0000 (17:10 +0200)]
Add inverse mass matrix with degree -1

4 years agoAdd 3/2 over-integration to list of instantiated quadratures
Martin Kronbichler [Fri, 18 Sep 2020 15:10:14 +0000 (17:10 +0200)]
Add 3/2 over-integration to list of instantiated quadratures

4 years agoFinalized step-68 10308/head
Bruno [Fri, 18 Sep 2020 11:37:08 +0000 (07:37 -0400)]
Finalized step-68
Fixed a bug related to deal.II distributed vector and to the particle
loop in interpolated euler.

4 years agoMerge pull request #10933 from elauksap/doc_muparser_fix
Peter Munch [Fri, 18 Sep 2020 13:34:59 +0000 (15:34 +0200)]
Merge pull request #10933 from elauksap/doc_muparser_fix

Fix broken link to muParser website

4 years agoFix broken link to muParser website 10933/head
Pasquale Africa [Fri, 18 Sep 2020 13:23:15 +0000 (13:23 +0000)]
Fix broken link to muParser website

4 years agoUse new factory class within library
Martin Kronbichler [Thu, 17 Sep 2020 14:20:16 +0000 (16:20 +0200)]
Use new factory class within library

4 years agoImplement factory class for FEEvaluation and FEFaceEvaluation
Martin Kronbichler [Thu, 17 Sep 2020 14:19:49 +0000 (16:19 +0200)]
Implement factory class for FEEvaluation and FEFaceEvaluation

4 years agoMerge pull request #10931 from peterrum/feeval_functions
Martin Kronbichler [Fri, 18 Sep 2020 12:36:52 +0000 (14:36 +0200)]
Merge pull request #10931 from peterrum/feeval_functions

Add some functions to FEEvaluation

4 years agoAdd some functions to FEEvaluation 10931/head
Peter Munch [Thu, 17 Sep 2020 20:00:14 +0000 (22:00 +0200)]
Add some functions to FEEvaluation

4 years agoAdd a changelog entry.
Wolfgang Bangerth [Thu, 17 Sep 2020 19:04:10 +0000 (13:04 -0600)]
Add a changelog entry.

4 years agoAlso install missing files from the code gallery.
Wolfgang Bangerth [Thu, 17 Sep 2020 19:03:04 +0000 (13:03 -0600)]
Also install missing files from the code gallery.

4 years agoMerge pull request #10929 from bangerth/period
David Wells [Thu, 17 Sep 2020 18:58:24 +0000 (14:58 -0400)]
Merge pull request #10929 from bangerth/period

Use proper grammar.

4 years agoUse proper grammar. 10929/head
Wolfgang Bangerth [Thu, 17 Sep 2020 18:42:15 +0000 (12:42 -0600)]
Use proper grammar.

4 years agoMerge pull request #10301 from bangerth/66
Peter Munch [Thu, 17 Sep 2020 18:26:58 +0000 (20:26 +0200)]
Merge pull request #10301 from bangerth/66

step-19: A simple particles tutorial.

4 years agoMerge pull request #10923 from bangerth/1
David Wells [Thu, 17 Sep 2020 13:27:18 +0000 (09:27 -0400)]
Merge pull request #10923 from bangerth/1

Make the tolerance in step-1 relative.

4 years agoMerge pull request #10925 from bangerth/1.2
David Wells [Thu, 17 Sep 2020 13:26:00 +0000 (09:26 -0400)]
Merge pull request #10925 from bangerth/1.2

Better link to what one can do with iterators.

4 years agoMerge pull request #10922 from kronbichler/refactor_fe_eval_impl
Peter Munch [Thu, 17 Sep 2020 12:49:09 +0000 (14:49 +0200)]
Merge pull request #10922 from kronbichler/refactor_fe_eval_impl

Refactor access to FEEvaluationImpl and friends

4 years agoAdjust return parameter. Add inverse mass matrix 10922/head
Martin Kronbichler [Thu, 17 Sep 2020 10:59:57 +0000 (12:59 +0200)]
Adjust return parameter. Add inverse mass matrix

4 years agoAdd a reference to step-68.
Wolfgang Bangerth [Wed, 16 Sep 2020 15:45:27 +0000 (09:45 -0600)]
Add a reference to step-68.

Make whitespace more uniform.

Edit euler_step_interpolated() somewhat.

Leave a note about step-68.

Edit the remainder of the program.

Apply suggestions from code review by bangerth

Co-authored-by: Wolfgang Bangerth <bangerth@colostate.edu>
Applied the final round of comments from Wolfgang

4 years agoRemove boundary fix
Matthias Maier [Wed, 16 Sep 2020 23:09:38 +0000 (18:09 -0500)]
Remove boundary fix

We compute the boundary normal by averaging the normal over the
quadrature points weighted with the shape function. It turns out that
this is sufficient to preserve mass and total energy. No change of the
c_ij's are needed.

4 years agoBetter link to what one can do with iterators. 10925/head
Wolfgang Bangerth [Wed, 16 Sep 2020 18:58:24 +0000 (12:58 -0600)]
Better link to what one can do with iterators.

4 years agoMerge pull request #10924 from bangerth/1.1
Daniel Arndt [Wed, 16 Sep 2020 18:54:01 +0000 (14:54 -0400)]
Merge pull request #10924 from bangerth/1.1

Better explain something in step-1.

4 years agoMake the tolerance in step-1 relative. 10923/head
Wolfgang Bangerth [Wed, 16 Sep 2020 17:41:19 +0000 (11:41 -0600)]
Make the tolerance in step-1 relative.

4 years agoBetter explain something in step-1. 10924/head
Wolfgang Bangerth [Wed, 16 Sep 2020 17:41:56 +0000 (11:41 -0600)]
Better explain something in step-1.


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