]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
7 years agoMerge pull request #5175 from masterleinad/mg_transfer_block
Martin Kronbichler [Wed, 4 Oct 2017 21:01:27 +0000 (23:01 +0200)]
Merge pull request #5175 from masterleinad/mg_transfer_block

MGTransferBlockMatrixFree with a separate DoFHandler for each block

7 years agoMerge pull request #5193 from bangerth/bb-update
David Wells [Wed, 4 Oct 2017 19:08:10 +0000 (15:08 -0400)]
Merge pull request #5193 from bangerth/bb-update

Doc update for GridTools::compute_bounding_box().

7 years agoMerge pull request #5192 from masterleinad/fix_slepc_test
Daniel Arndt [Wed, 4 Oct 2017 18:03:45 +0000 (20:03 +0200)]
Merge pull request #5192 from masterleinad/fix_slepc_test

Use MUMPS in SLEPcWrappers test

7 years agoMerge pull request #5176 from bangerth/simplify-code
Timo Heister [Wed, 4 Oct 2017 17:47:09 +0000 (13:47 -0400)]
Merge pull request #5176 from bangerth/simplify-code

Simplify logic in p::d::Triangulation.

7 years agoSimplify code. 5176/head
Wolfgang Bangerth [Sun, 1 Oct 2017 22:58:41 +0000 (16:58 -0600)]
Simplify code.

The previous patch made 'refinement_in_progress' obsolete. Remove it.

7 years agoMerge pull request #5194 from masterleinad/rempve_semicolon
Wolfgang Bangerth [Tue, 3 Oct 2017 21:08:12 +0000 (15:08 -0600)]
Merge pull request #5194 from masterleinad/rempve_semicolon

Remove extra ';'

7 years agoUse MUMPS in PETScWrappers::Jacobi and PETScWrappers::BlockJacobi if available 5192/head
Daniel Arndt [Tue, 3 Oct 2017 16:46:04 +0000 (18:46 +0200)]
Use MUMPS in PETScWrappers::Jacobi and PETScWrappers::BlockJacobi if available

7 years agoMerge pull request #5174 from davydden/la_p_block_scalar_product
Denis Davydov [Tue, 3 Oct 2017 20:07:05 +0000 (22:07 +0200)]
Merge pull request #5174 from davydden/la_p_block_scalar_product

add LA::d::BlockVector:: multivector_inner_product()

7 years agoRemove extra ';' 5194/head
Daniel Arndt [Tue, 3 Oct 2017 20:04:05 +0000 (22:04 +0200)]
Remove extra ';'

7 years agoAdd a test. 5193/head
Wolfgang Bangerth [Tue, 3 Oct 2017 19:27:55 +0000 (13:27 -0600)]
Add a test.

7 years agoDoc update for GridTools::compute_bounding_box().
Wolfgang Bangerth [Tue, 3 Oct 2017 19:27:46 +0000 (13:27 -0600)]
Doc update for GridTools::compute_bounding_box().

7 years agominor doxygen fixes 5174/head
Denis Davydov [Tue, 3 Oct 2017 17:54:16 +0000 (19:54 +0200)]
minor doxygen fixes

7 years agoMerge pull request #5182 from bangerth/update-test
Daniel Arndt [Tue, 3 Oct 2017 14:35:48 +0000 (16:35 +0200)]
Merge pull request #5182 from bangerth/update-test

Update a test.

7 years agoMerge pull request #5151 from tamiko/generalized_interpolation_2
Luca Heltai [Tue, 3 Oct 2017 12:54:33 +0000 (14:54 +0200)]
Merge pull request #5151 from tamiko/generalized_interpolation_2

Improve VectorTools::interpolate: Transformation for systems

7 years agoMerge pull request #5183 from bangerth/doc-update
Luca Heltai [Tue, 3 Oct 2017 12:53:32 +0000 (14:53 +0200)]
Merge pull request #5183 from bangerth/doc-update

A minor doc update to class CellID.

7 years agoMerge pull request #5178 from masterleinad/fix_compile_petsc_complex
Wolfgang Bangerth [Tue, 3 Oct 2017 12:45:20 +0000 (06:45 -0600)]
Merge pull request #5178 from masterleinad/fix_compile_petsc_complex

Fix compilation with complex-valued PETSc

7 years agoMerge pull request #5172 from davydden/parpack_pointers
Luca Heltai [Tue, 3 Oct 2017 12:33:09 +0000 (14:33 +0200)]
Merge pull request #5172 from davydden/parpack_pointers

parpack: add additional solve() which takes eigenvectors as pointers

7 years agostatic_asserts for SUNDIALS solvers 5178/head
Daniel Arndt [Tue, 3 Oct 2017 11:00:42 +0000 (13:00 +0200)]
static_asserts for SUNDIALS solvers

7 years agomake sure multivector_inner_product() updates Property of LAPACKFullMatrix accordingly
Denis Davydov [Mon, 2 Oct 2017 18:00:26 +0000 (20:00 +0200)]
make sure multivector_inner_product() updates Property of LAPACKFullMatrix accordingly

7 years agoadd LA::d::BlockVector::multivector_inner_product()
Denis Davydov [Sat, 30 Sep 2017 21:36:42 +0000 (23:36 +0200)]
add LA::d::BlockVector::multivector_inner_product()

7 years agoadd Utilities::MPI::sum() for LAPACKFullMatrix objects
Denis Davydov [Sat, 30 Sep 2017 21:34:17 +0000 (23:34 +0200)]
add Utilities::MPI::sum() for LAPACKFullMatrix objects

7 years agoMerge pull request #5190 from drwells/add-lapacksupport-docs
Wolfgang Bangerth [Tue, 3 Oct 2017 03:02:52 +0000 (21:02 -0600)]
Merge pull request #5190 from drwells/add-lapacksupport-docs

Enable doxygen for the LAPACKSupport namespace.

7 years agoEnable doxygen for the LAPACKSupport namespace. 5190/head
David Wells [Tue, 3 Oct 2017 02:11:26 +0000 (22:11 -0400)]
Enable doxygen for the LAPACKSupport namespace.

Doxygen does not pick up undocumented namespaces

7 years agoMerge pull request #5186 from bangerth/doc-update-2
David Wells [Tue, 3 Oct 2017 00:46:42 +0000 (20:46 -0400)]
Merge pull request #5186 from bangerth/doc-update-2

Update documentation of SparseMatrixEZ.

7 years agoMerge pull request #5181 from bangerth/fix-exception-2
David Wells [Tue, 3 Oct 2017 00:28:04 +0000 (20:28 -0400)]
Merge pull request #5181 from bangerth/fix-exception-2

Make sure a destructor does not throw any exceptions.

7 years agoMerge pull request #5187 from bangerth/empty-constructor
David Wells [Tue, 3 Oct 2017 00:16:54 +0000 (20:16 -0400)]
Merge pull request #5187 from bangerth/empty-constructor

Use =default for an empty constructor.

7 years agoUse =default for an empty constructor. 5187/head
Wolfgang Bangerth [Mon, 2 Oct 2017 22:21:14 +0000 (16:21 -0600)]
Use =default for an empty constructor.

7 years agoUpdate documentation of SparseMatrixEZ. 5186/head
Wolfgang Bangerth [Mon, 2 Oct 2017 22:16:50 +0000 (16:16 -0600)]
Update documentation of SparseMatrixEZ.

7 years agoMerge pull request #5180 from bangerth/fix-exception
David Wells [Mon, 2 Oct 2017 18:52:51 +0000 (14:52 -0400)]
Merge pull request #5180 from bangerth/fix-exception

Catch exception by reference.

7 years agoA minor doc update to class CellID. 5183/head
Wolfgang Bangerth [Mon, 2 Oct 2017 16:47:49 +0000 (10:47 -0600)]
A minor doc update to class CellID.

7 years agoUpdate a test. 5182/head
Wolfgang Bangerth [Mon, 2 Oct 2017 16:42:51 +0000 (10:42 -0600)]
Update a test.

Let the test produce more output to make debugging easier if something goes wrong.

7 years agoMake sure a destructor does not throw any exceptions. 5181/head
Wolfgang Bangerth [Mon, 2 Oct 2017 16:33:57 +0000 (10:33 -0600)]
Make sure a destructor does not throw any exceptions.

7 years agoCatch exception by reference. 5180/head
Wolfgang Bangerth [Mon, 2 Oct 2017 16:28:21 +0000 (10:28 -0600)]
Catch exception by reference.

Copying is inefficient and, in this case, clearly unnecessary.

7 years agoMerge pull request #5177 from masterleinad/unused_vars
Wolfgang Bangerth [Mon, 2 Oct 2017 14:18:35 +0000 (08:18 -0600)]
Merge pull request #5177 from masterleinad/unused_vars

Silence warnings for unused parameters without LAPACK

7 years agoExtend convert_generalized_support_point_values_to_dof_values for complex-valued...
Daniel Arndt [Mon, 2 Oct 2017 14:12:44 +0000 (16:12 +0200)]
Extend convert_generalized_support_point_values_to_dof_values for complex-valued types

7 years agoDisable some Sundials functions for complex-valued PETSc
Daniel Arndt [Mon, 2 Oct 2017 14:11:59 +0000 (16:11 +0200)]
Disable some Sundials functions for complex-valued PETSc

7 years agoMerge pull request #5109 from davydden/interpolate_mg
Daniel Arndt [Mon, 2 Oct 2017 13:42:14 +0000 (15:42 +0200)]
Merge pull request #5109 from davydden/interpolate_mg

facilitate transfer of fine-level solution to MG levels and test it with MappingQEulerian

7 years agoSilence warnings for unused parameters without LAPACK 5177/head
Daniel Arndt [Mon, 2 Oct 2017 12:28:59 +0000 (14:28 +0200)]
Silence warnings for unused parameters without LAPACK

7 years agoMerge pull request #4729 from gassmoeller/add_particle_class
Luca Heltai [Mon, 2 Oct 2017 09:10:52 +0000 (11:10 +0200)]
Merge pull request #4729 from gassmoeller/add_particle_class

Add particle class

7 years agoChangelog entry 5175/head
Daniel Arndt [Sun, 1 Oct 2017 18:15:07 +0000 (20:15 +0200)]
Changelog entry

7 years agoAdd tests
Daniel Arndt [Sun, 1 Oct 2017 18:14:50 +0000 (20:14 +0200)]
Add tests

7 years agoAllow to use MGTransferBlockMatrixFree with a separate DoFHandler for each block
Daniel Arndt [Sun, 1 Oct 2017 20:53:10 +0000 (22:53 +0200)]
Allow to use MGTransferBlockMatrixFree with a separate DoFHandler for each block

7 years agoSimplify the logic during parallel::distributed mesh refinement.
Wolfgang Bangerth [Sun, 1 Oct 2017 22:03:42 +0000 (16:03 -0600)]
Simplify the logic during parallel::distributed mesh refinement.

Specifically, rather than let a function call itself recursively and catch that,
make sure we call the function of the base class right away.

7 years agoAllow to use PreconditionMG with a separate DoFHandler for each block
Daniel Arndt [Sun, 1 Oct 2017 20:53:01 +0000 (22:53 +0200)]
Allow to use PreconditionMG with a separate DoFHandler for each block

7 years agoFix MatrixFreeOperators::Base::initialize_dof_vector
Daniel Arndt [Sun, 1 Oct 2017 20:51:26 +0000 (22:51 +0200)]
Fix MatrixFreeOperators::Base::initialize_dof_vector

7 years agoparpack: add additional solve() which takes eigenvectors as pointers 5172/head
Denis Davydov [Fri, 29 Sep 2017 16:01:14 +0000 (18:01 +0200)]
parpack: add additional solve() which takes eigenvectors as pointers

7 years agoMerge pull request #5170 from bangerth/fix-warning
Daniel Arndt [Thu, 28 Sep 2017 20:25:54 +0000 (22:25 +0200)]
Merge pull request #5170 from bangerth/fix-warning

Fix a warning about a missing return statement.

7 years agoFix a warning about a missing return statement. 5170/head
Wolfgang Bangerth [Thu, 28 Sep 2017 17:00:35 +0000 (11:00 -0600)]
Fix a warning about a missing return statement.

7 years agoMerge pull request #5154 from davydden/lapack_cholesky
Denis Davydov [Thu, 28 Sep 2017 16:13:26 +0000 (18:13 +0200)]
Merge pull request #5154 from davydden/lapack_cholesky

extend LAPACKFullMatrix to do Cholesky, inverse of SPD, norms and con…

7 years agoMerge pull request #5164 from bangerth/cleanups
Daniel Arndt [Thu, 28 Sep 2017 16:12:46 +0000 (18:12 +0200)]
Merge pull request #5164 from bangerth/cleanups

Two small cleanups in the code that computes hanging node constraints.

7 years agoMerge pull request #5168 from bangerth/doc-update
Daniel Arndt [Thu, 28 Sep 2017 15:35:08 +0000 (17:35 +0200)]
Merge pull request #5168 from bangerth/doc-update

Properly qualify a function name.

7 years agoMerge pull request #5106 from luca-heltai/extract-used-vertices
Wolfgang Bangerth [Thu, 28 Sep 2017 15:30:29 +0000 (09:30 -0600)]
Merge pull request #5106 from luca-heltai/extract-used-vertices

GridTools::extract_used_vertices

7 years agoProperly qualify a function name. 5168/head
Wolfgang Bangerth [Thu, 28 Sep 2017 15:29:06 +0000 (09:29 -0600)]
Properly qualify a function name.

7 years agoMerge pull request #5107 from eldarkh/fix-hp-rt-issues
Wolfgang Bangerth [Thu, 28 Sep 2017 15:28:03 +0000 (09:28 -0600)]
Merge pull request #5107 from eldarkh/fix-hp-rt-issues

More support for vector-valued hp FE spaces

7 years agoMerge pull request #5166 from luca-heltai/switch-order-sundials
Wolfgang Bangerth [Thu, 28 Sep 2017 13:29:36 +0000 (07:29 -0600)]
Merge pull request #5166 from luca-heltai/switch-order-sundials

Switch order of arguments in constructors for SUNDIALS::*

7 years agoAddress comments, add test for ParticleIterator and ParticleAccessor 4729/head
Rene Gassmoeller [Mon, 25 Sep 2017 17:35:32 +0000 (11:35 -0600)]
Address comments, add test for ParticleIterator and ParticleAccessor

7 years agoMerge pull request #5074 from jwitte08/vectorized_tensor_product_matrix_sum
Martin Kronbichler [Thu, 28 Sep 2017 08:10:48 +0000 (10:10 +0200)]
Merge pull request #5074 from jwitte08/vectorized_tensor_product_matrix_sum

Vectorized tensor product matrix

7 years agoAdded a changelog entry. 5074/head
Julius Witte [Wed, 27 Sep 2017 11:32:17 +0000 (13:32 +0200)]
Added a changelog entry.

7 years agoSwitched order of arguments in SUNDIALS::* constructors. 5166/head
Luca Heltai [Thu, 28 Sep 2017 07:59:56 +0000 (09:59 +0200)]
Switched order of arguments in SUNDIALS::* constructors.

7 years agoMerge pull request #5165 from bangerth/simplify
David Wells [Wed, 27 Sep 2017 21:46:08 +0000 (17:46 -0400)]
Merge pull request #5165 from bangerth/simplify

Simplify some con/destructors by using =default.

7 years agorun astyle. yes, it looks quite bad :-( 5151/head
Matthias Maier [Wed, 27 Sep 2017 17:14:15 +0000 (12:14 -0500)]
run astyle. yes, it looks quite bad :-(

7 years agorefactor code
Matthias Maier [Wed, 27 Sep 2017 17:12:59 +0000 (12:12 -0500)]
refactor code

7 years agoSimplify some con/destructors by using =default. 5165/head
Wolfgang Bangerth [Wed, 27 Sep 2017 19:40:05 +0000 (13:40 -0600)]
Simplify some con/destructors by using =default.

7 years agoMerge pull request #5149 from bangerth/more-hp-work
David Wells [Wed, 27 Sep 2017 17:35:53 +0000 (13:35 -0400)]
Merge pull request #5149 from bangerth/more-hp-work

More steps towards hp in parallel.

7 years agomove thread mutex 5154/head
Denis Davydov [Wed, 27 Sep 2017 14:47:01 +0000 (16:47 +0200)]
move thread mutex

7 years agoBugfix: Also handle nested fe systems
Matthias Maier [Tue, 26 Sep 2017 17:20:12 +0000 (12:20 -0500)]
Bugfix: Also handle nested fe systems

7 years agoadd a test
Matthias Maier [Tue, 26 Sep 2017 16:40:25 +0000 (11:40 -0500)]
add a test

7 years agoreorganize generalized_interpolation tests, add a variant
Matthias Maier [Mon, 25 Sep 2017 22:43:38 +0000 (17:43 -0500)]
reorganize generalized_interpolation tests, add a variant

7 years agoPrefer std::make_shared() over operator new(). 5164/head
Wolfgang Bangerth [Wed, 27 Sep 2017 16:57:05 +0000 (10:57 -0600)]
Prefer std::make_shared() over operator new().

7 years agoreenable last part of numerics/generalized_interpolation_02
Matthias Maier [Mon, 25 Sep 2017 22:35:45 +0000 (17:35 -0500)]
reenable last part of numerics/generalized_interpolation_02

7 years agoVectorTools::interpolate - support transformations with FESystems
Matthias Maier [Sun, 17 Sep 2017 21:50:26 +0000 (16:50 -0500)]
VectorTools::interpolate - support transformations with FESystems

7 years agominor documentation cleanup
Denis Davydov [Wed, 27 Sep 2017 08:34:53 +0000 (10:34 +0200)]
minor documentation cleanup

7 years agoSimplify some pieces of code.
Wolfgang Bangerth [Wed, 27 Sep 2017 14:47:57 +0000 (08:47 -0600)]
Simplify some pieces of code.

7 years agoReorder statements to avoid some computations when not necessary.
Wolfgang Bangerth [Tue, 26 Sep 2017 21:23:25 +0000 (15:23 -0600)]
Reorder statements to avoid some computations when not necessary.

7 years agoremove an empty line 5109/head
Denis Davydov [Wed, 27 Sep 2017 14:27:55 +0000 (16:27 +0200)]
remove an empty line

7 years agoadd changelog entries
Denis Davydov [Wed, 27 Sep 2017 14:26:20 +0000 (16:26 +0200)]
add changelog entries

7 years agoextend MappingQEulerian to work with multi-grid solution vectors
Denis Davydov [Wed, 27 Sep 2017 14:25:27 +0000 (16:25 +0200)]
extend MappingQEulerian to work with multi-grid solution vectors

7 years agoadd MGTransferMatrixFree::interpolate_to_mg() to transfer fine-level solution to...
Denis Davydov [Wed, 27 Sep 2017 14:24:19 +0000 (16:24 +0200)]
add MGTransferMatrixFree::interpolate_to_mg() to transfer fine-level solution to a multi-grid vector

7 years agoMerge pull request #5156 from luca-heltai/arkode
Wolfgang Bangerth [Wed, 27 Sep 2017 14:08:02 +0000 (08:08 -0600)]
Merge pull request #5156 from luca-heltai/arkode

ARKode interface.

7 years agoMerge pull request #5148 from tamiko/make_dealii_great_again
Luca Heltai [Wed, 27 Sep 2017 14:01:28 +0000 (16:01 +0200)]
Merge pull request #5148 from tamiko/make_dealii_great_again

Fix FindASSIMP.cmake and improve DEAL_II_DISABLE_EXTRA_DIAGNOSTICS

7 years agoMerge pull request #5162 from masterleinad/restrict_tests_p4est
Luca Heltai [Wed, 27 Sep 2017 14:00:45 +0000 (16:00 +0200)]
Merge pull request #5162 from masterleinad/restrict_tests_p4est

Restrict tests requiring p4est

7 years agoFixed WB comments. 5106/head
Luca Heltai [Wed, 27 Sep 2017 13:41:08 +0000 (15:41 +0200)]
Fixed WB comments.

7 years agoGridTools::find_closest_vertex with mapping argument.
Luca Heltai [Tue, 19 Sep 2017 14:37:50 +0000 (16:37 +0200)]
GridTools::find_closest_vertex with mapping argument.

7 years agoAdded test with MappingQEulerian.
Luca Heltai [Tue, 19 Sep 2017 13:22:45 +0000 (15:22 +0200)]
Added test with MappingQEulerian.

7 years agoGridTools::find_closest_vertex(map, point)
Luca Heltai [Tue, 19 Sep 2017 12:49:28 +0000 (14:49 +0200)]
GridTools::find_closest_vertex(map, point)

7 years agoNew GridTools::extract_used_vertices function.
Luca Heltai [Mon, 18 Sep 2017 15:35:17 +0000 (17:35 +0200)]
New GridTools::extract_used_vertices function.

7 years agoMerge pull request #5159 from bangerth/doc-update
Luca Heltai [Wed, 27 Sep 2017 12:51:17 +0000 (14:51 +0200)]
Merge pull request #5159 from bangerth/doc-update

Update documentation in VectorMemory and derived classes.

7 years agodeal2lkit -> deal.II, 2015 -> 2017 5156/head
Luca Heltai [Wed, 27 Sep 2017 12:41:07 +0000 (14:41 +0200)]
deal2lkit -> deal.II, 2015 -> 2017

7 years agoChangeLog.
Luca Heltai [Wed, 27 Sep 2017 12:36:31 +0000 (14:36 +0200)]
ChangeLog.

7 years agoBrusselator test with jacobian.
Luca Heltai [Wed, 27 Sep 2017 12:33:48 +0000 (14:33 +0200)]
Brusselator test with jacobian.

7 years agoTest all nonjacobian interfaces.
Luca Heltai [Wed, 27 Sep 2017 10:53:16 +0000 (12:53 +0200)]
Test all nonjacobian interfaces.

7 years agoARKode interface.
Luca Heltai [Tue, 26 Sep 2017 14:45:49 +0000 (16:45 +0200)]
ARKode interface.

7 years agoAdd ARKode to FindSUNDIALS.
Luca Heltai [Tue, 26 Sep 2017 14:45:36 +0000 (16:45 +0200)]
Add ARKode to FindSUNDIALS.

7 years agoMerge pull request #5163 from masterleinad/unused_param_param_acceptor
Daniel Arndt [Wed, 27 Sep 2017 12:01:35 +0000 (14:01 +0200)]
Merge pull request #5163 from masterleinad/unused_param_param_acceptor

Remove unused parameter

7 years agoMerge pull request #5153 from bangerth/avoid-raw-pointers
Luca Heltai [Wed, 27 Sep 2017 11:04:23 +0000 (13:04 +0200)]
Merge pull request #5153 from bangerth/avoid-raw-pointers

Avoid raw pointers in SUNDIALS IDA interfaces.

7 years agoMerge pull request #5161 from drwells/add-deal-ii-with-petsc-with-hypre
Denis Davydov [Wed, 27 Sep 2017 11:02:09 +0000 (13:02 +0200)]
Merge pull request #5161 from drwells/add-deal-ii-with-petsc-with-hypre

Add DEAL_II_PETSC_WITH_HYPRE.

7 years agoRemove unused parameter 5163/head
Daniel Arndt [Wed, 27 Sep 2017 10:16:51 +0000 (12:16 +0200)]
Remove unused parameter

7 years agoRestrict tests requiring p4est 5162/head
Daniel Arndt [Wed, 27 Sep 2017 10:12:40 +0000 (12:12 +0200)]
Restrict tests requiring p4est

7 years agoa changelog for LAPACKSupport::Property
Denis Davydov [Wed, 27 Sep 2017 07:10:23 +0000 (09:10 +0200)]
a changelog for LAPACKSupport::Property

7 years agouse Testing::rand() to generate matrices
Denis Davydov [Wed, 27 Sep 2017 07:09:54 +0000 (09:09 +0200)]
use Testing::rand() to generate matrices


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