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7 years agoMerge pull request #5259 from kronbichler/extend_mpi_partitioner
Wolfgang Bangerth [Thu, 19 Oct 2017 23:07:10 +0000 (17:07 -0600)]
Merge pull request #5259 from kronbichler/extend_mpi_partitioner

Extend mpi partitioner

7 years agoMerge pull request #5266 from davydden/mf_operators_diagonal
Daniel Arndt [Thu, 19 Oct 2017 22:38:48 +0000 (00:38 +0200)]
Merge pull request #5266 from davydden/mf_operators_diagonal

add a boolean flag to MatrixFreeOperators::Base::compute_diagonal() t…

7 years agoextend MatrixFreeOperators::Base to store the diagonal of the operator. 5266/head
Denis Davydov [Thu, 19 Oct 2017 09:27:42 +0000 (11:27 +0200)]
extend MatrixFreeOperators::Base to store the diagonal of the operator.

7 years agoAdd tests for the reduced MPI communication. 5259/head
Martin Kronbichler [Thu, 19 Oct 2017 12:32:37 +0000 (14:32 +0200)]
Add tests for the reduced MPI communication.

7 years agoSimplify exception message.
Martin Kronbichler [Thu, 19 Oct 2017 10:17:58 +0000 (12:17 +0200)]
Simplify exception message.

7 years agoDocument the parameters of the new functions extensively.
Martin Kronbichler [Thu, 19 Oct 2017 10:12:49 +0000 (12:12 +0200)]
Document the parameters of the new functions extensively.

7 years agoMerge pull request #5265 from GivAlz/CorrectSpelling
David Wells [Wed, 18 Oct 2017 20:34:34 +0000 (16:34 -0400)]
Merge pull request #5265 from GivAlz/CorrectSpelling

Corrected spelling in grid tool function

7 years agoCorrected spelling 5265/head
Giovanni Alzetta [Wed, 18 Oct 2017 21:54:01 +0000 (21:54 +0000)]
Corrected spelling

7 years agoMerge pull request #5260 from davydden/minor_extensions
Martin Kronbichler [Wed, 18 Oct 2017 08:00:30 +0000 (10:00 +0200)]
Merge pull request #5260 from davydden/minor_extensions

add MGInterfaceOperator::initialize_dof_vector()

7 years agoFix documentation.
Martin Kronbichler [Tue, 17 Oct 2017 20:29:30 +0000 (22:29 +0200)]
Fix documentation.

7 years agoAdd changelog
Martin Kronbichler [Tue, 17 Oct 2017 16:51:44 +0000 (18:51 +0200)]
Add changelog

7 years agoMerge pull request #5255 from jppelteret/symm_tensor-rank
Denis Davydov [Tue, 17 Oct 2017 19:17:08 +0000 (21:17 +0200)]
Merge pull request #5255 from jppelteret/symm_tensor-rank

Add static member data for SymmetricTensor rank.

7 years agoMerge pull request #5256 from jppelteret/add_test-tensor_contract
Denis Davydov [Tue, 17 Oct 2017 19:16:30 +0000 (21:16 +0200)]
Merge pull request #5256 from jppelteret/add_test-tensor_contract

Add unit test: Tensor contraction on outermost indices

7 years agoMerge pull request #5258 from jppelteret/physics-push_forward
Denis Davydov [Tue, 17 Oct 2017 19:15:55 +0000 (21:15 +0200)]
Merge pull request #5258 from jppelteret/physics-push_forward

Fix Physics::internal::transformation_contraction for standard Tensors.

7 years agoAdd test for embedded data in Partitioner.
Martin Kronbichler [Tue, 17 Oct 2017 16:45:44 +0000 (18:45 +0200)]
Add test for embedded data in Partitioner.

7 years agoUse new communication patterns from Partitioner in LA::d::Vector.
Martin Kronbichler [Tue, 17 Oct 2017 16:44:15 +0000 (18:44 +0200)]
Use new communication patterns from Partitioner in LA::d::Vector.

7 years agoAdd new MPI partitioner functionality.
Martin Kronbichler [Tue, 17 Oct 2017 16:43:36 +0000 (18:43 +0200)]
Add new MPI partitioner functionality.

Support for embedding into larger ghost set.
MPI import and export functions.

7 years agoAdd static member data for SymmetricTensor rank. 5255/head
Jean-Paul Pelteret [Mon, 16 Oct 2017 07:31:31 +0000 (09:31 +0200)]
Add static member data for SymmetricTensor rank.

7 years agoMerge pull request #5254 from bangerth/doc-update-2
Jean-Paul Pelteret [Tue, 17 Oct 2017 12:52:56 +0000 (14:52 +0200)]
Merge pull request #5254 from bangerth/doc-update-2

Better explain the meaning of Point<dim>.

7 years agoBetter explain the meaning of Point<dim>. 5254/head
Wolfgang Bangerth [Tue, 17 Oct 2017 03:59:39 +0000 (21:59 -0600)]
Better explain the meaning of Point<dim>.

7 years agoMerge pull request #5257 from mwichro/master
Jean-Paul Pelteret [Tue, 17 Oct 2017 12:32:07 +0000 (14:32 +0200)]
Merge pull request #5257 from mwichro/master

Fix number type in make_vectorized_array inside get_symmetric_gradient

7 years agoFix Physics::internal::transformation_contraction for standard Tensors. 5258/head
Jean-Paul Pelteret [Tue, 17 Oct 2017 11:28:41 +0000 (13:28 +0200)]
Fix Physics::internal::transformation_contraction for standard Tensors.

A robust unit test has been attached free of charge.

7 years agoFix number type in make_vectorized_array inside get_symmetric_gradient 5257/head
Michał Wichrowski [Tue, 17 Oct 2017 10:41:03 +0000 (12:41 +0200)]
Fix number type in make_vectorized_array inside get_symmetric_gradient

7 years agoAdd unit test: Tensor contraction on outermost indices 5256/head
Jean-Paul Pelteret [Tue, 17 Oct 2017 09:20:44 +0000 (11:20 +0200)]
Add unit test: Tensor contraction on outermost indices

7 years agoMerge pull request #5253 from bangerth/doc-update
Martin Kronbichler [Tue, 17 Oct 2017 08:57:56 +0000 (10:57 +0200)]
Merge pull request #5253 from bangerth/doc-update

Document (active_)?face_iterator typedefs.

7 years agoadd MGInterfaceOperator::initialize_dof_vector() 5260/head
Denis Davydov [Tue, 17 Oct 2017 06:53:57 +0000 (08:53 +0200)]
add MGInterfaceOperator::initialize_dof_vector()

7 years agoMerge pull request #5238 from luca-heltai/cache-getters
Daniel Arndt [Mon, 16 Oct 2017 20:02:15 +0000 (22:02 +0200)]
Merge pull request #5238 from luca-heltai/cache-getters

Extract used vertices in GridTools::Cache, + getters.

7 years agoMerge pull request #5227 from bangerth/exception-work
Daniel Arndt [Mon, 16 Oct 2017 19:59:23 +0000 (21:59 +0200)]
Merge pull request #5227 from bangerth/exception-work

Replace exceptions without message by ones with a message.

7 years agoUse @copydoc in hp::DoFHandler. 5253/head
Wolfgang Bangerth [Mon, 16 Oct 2017 16:11:14 +0000 (10:11 -0600)]
Use @copydoc in hp::DoFHandler.

7 years agoMerge pull request #5252 from davydden/test_mapping_q_eulerian
Wolfgang Bangerth [Mon, 16 Oct 2017 16:02:54 +0000 (10:02 -0600)]
Merge pull request #5252 from davydden/test_mapping_q_eulerian

Test MappingQEulerian with mass and laplace matrix-free operators

7 years agoMerge pull request #5247 from drwells/add-make-zero-bc-codim-inst
Wolfgang Bangerth [Mon, 16 Oct 2017 16:02:14 +0000 (10:02 -0600)]
Merge pull request #5247 from drwells/add-make-zero-bc-codim-inst

Add some missing instantiations.

7 years agoDocument (active_)?face_iterator typedefs.
Wolfgang Bangerth [Mon, 16 Oct 2017 15:02:49 +0000 (09:02 -0600)]
Document (active_)?face_iterator typedefs.

7 years agoMerge pull request #5251 from jppelteret/numbers-conversions
Wolfgang Bangerth [Mon, 16 Oct 2017 15:52:52 +0000 (09:52 -0600)]
Merge pull request #5251 from jppelteret/numbers-conversions

Implement a more generic method of converting between number types.

7 years agoadd another test for MappingQEulerian by comparing to manually deformed tria 5252/head
Denis Davydov [Mon, 16 Oct 2017 11:06:00 +0000 (13:06 +0200)]
add another test for MappingQEulerian by comparing to manually deformed tria

7 years agoImplement a more generic method of converting between number types. 5251/head
Jean-Paul Pelteret [Mon, 16 Oct 2017 07:47:02 +0000 (09:47 +0200)]
Implement a more generic method of converting between number types.

This is particularly useful when needing to cast exotic number types to
a floating point numbers, such as might happen when converting between
tensor types.

7 years agoMerge pull request #5243 from masterleinad/ub_2
Wolfgang Bangerth [Sun, 15 Oct 2017 22:20:06 +0000 (16:20 -0600)]
Merge pull request #5243 from masterleinad/ub_2

Fix undefined behavior in DoFHandler

7 years agoMerge pull request #5249 from masterleinad/fix_ub_new
Wolfgang Bangerth [Sun, 15 Oct 2017 22:16:22 +0000 (16:16 -0600)]
Merge pull request #5249 from masterleinad/fix_ub_new

Run base/generate_normal_random_number_01 only with threads enabled

7 years agoRun base/generate_normal_random_number_01 only with threads enabled 5249/head
Daniel Arndt [Sun, 15 Oct 2017 12:20:27 +0000 (14:20 +0200)]
Run base/generate_normal_random_number_01 only with threads enabled

7 years agoAdd codim instantiations for make_zero_boundary_constraints. 5247/head
David Wells [Sun, 15 Oct 2017 01:09:48 +0000 (21:09 -0400)]
Add codim instantiations for make_zero_boundary_constraints.

7 years agoFix two comments (they return references, not pointers).
David Wells [Sun, 15 Oct 2017 02:07:28 +0000 (22:07 -0400)]
Fix two comments (they return references, not pointers).

7 years agoDeprecate DoFTools::extract_locally_owned_dofs.
David Wells [Sun, 15 Oct 2017 02:06:04 +0000 (22:06 -0400)]
Deprecate DoFTools::extract_locally_owned_dofs.

All that this function does is return a copy of
dof_handler.locally_owned_dofs(): we should just use that function directly.

7 years agoMerge pull request #5244 from masterleinad/ub_3
David Wells [Sun, 15 Oct 2017 02:48:10 +0000 (22:48 -0400)]
Merge pull request #5244 from masterleinad/ub_3

Fix description for shared_ptr

7 years agoMerge pull request #5245 from masterleinad/ub_4
David Wells [Sat, 14 Oct 2017 23:46:30 +0000 (19:46 -0400)]
Merge pull request #5245 from masterleinad/ub_4

Fix undefined behavior in tests

7 years agoMerge pull request #5242 from masterleinad/ub_1
David Wells [Sat, 14 Oct 2017 23:43:16 +0000 (19:43 -0400)]
Merge pull request #5242 from masterleinad/ub_1

Fix undefined behavior in TridiagonalMatrix

7 years agoFix undefined behavior in tests 5245/head
Daniel Arndt [Sat, 14 Oct 2017 12:25:16 +0000 (14:25 +0200)]
Fix undefined behavior in tests

7 years agoFix description for shared_ptr 5244/head
Daniel Arndt [Sat, 14 Oct 2017 12:27:18 +0000 (14:27 +0200)]
Fix description for shared_ptr

7 years agoFix undefined behavior DoFHandler 5243/head
Daniel Arndt [Sat, 14 Oct 2017 12:28:59 +0000 (14:28 +0200)]
Fix undefined behavior DoFHandler

7 years agoFix undefined behavior in TridiagonalMatrix 5242/head
Daniel Arndt [Sat, 14 Oct 2017 12:31:53 +0000 (14:31 +0200)]
Fix undefined behavior in TridiagonalMatrix

7 years agoMerge pull request #5241 from gassmoeller/tria_fixes
Denis Davydov [Sat, 14 Oct 2017 08:18:06 +0000 (10:18 +0200)]
Merge pull request #5241 from gassmoeller/tria_fixes

Add dummy functions to parallel::distributed::Triangulation<1,spacedim>

7 years agoAdd dummy functions 5241/head
Rene Gassmoeller [Fri, 13 Oct 2017 20:47:16 +0000 (14:47 -0600)]
Add dummy functions

7 years agoAdded get_used_vertices to GridTools::Cache 5238/head
Luca Heltai [Fri, 13 Oct 2017 16:01:13 +0000 (18:01 +0200)]
Added get_used_vertices to GridTools::Cache

7 years agoMerge pull request #5217 from drwells/prefer-data-to-address-of-first
Daniel Arndt [Fri, 13 Oct 2017 13:23:37 +0000 (15:23 +0200)]
Merge pull request #5217 from drwells/prefer-data-to-address-of-first

Prefer data to address of first

7 years agoMerge pull request #5234 from masterleinad/fix_std_unique_ptr_release
Wolfgang Bangerth [Fri, 13 Oct 2017 13:01:10 +0000 (07:01 -0600)]
Merge pull request #5234 from masterleinad/fix_std_unique_ptr_release

Clarify FE_Enriched::setup_data

7 years agoMerge pull request #5237 from luca-heltai/simplify-ida
Wolfgang Bangerth [Fri, 13 Oct 2017 13:00:38 +0000 (07:00 -0600)]
Merge pull request #5237 from luca-heltai/simplify-ida

Simplify IDA.

7 years agoImprove description of passing ownership 5234/head
Daniel Arndt [Fri, 13 Oct 2017 10:35:10 +0000 (12:35 +0200)]
Improve description of passing ownership

7 years agoAdded getters for Mapping and Triangulation
Luca Heltai [Fri, 13 Oct 2017 10:09:51 +0000 (12:09 +0200)]
Added getters for Mapping and Triangulation

7 years agoRemove use_local_tolerances parameter. 5237/head
Luca Heltai [Fri, 13 Oct 2017 09:31:54 +0000 (11:31 +0200)]
Remove use_local_tolerances parameter.

7 years agoMerge pull request #5236 from masterleinad/fix_adolc_test
Jean-Paul Pelteret [Fri, 13 Oct 2017 05:23:35 +0000 (07:23 +0200)]
Merge pull request #5236 from masterleinad/fix_adolc_test

Fix memory leak in ADOLC test

7 years agoMerge pull request #5235 from masterleinad/fix_unique_ptr_release_2
Wolfgang Bangerth [Thu, 12 Oct 2017 22:56:44 +0000 (16:56 -0600)]
Merge pull request #5235 from masterleinad/fix_unique_ptr_release_2

Fix memory leak in DoFHandler

7 years agoFix memory leank in ADOLC test 5236/head
Daniel Arndt [Thu, 12 Oct 2017 22:25:01 +0000 (00:25 +0200)]
Fix memory leank in ADOLC test

7 years agoClarify FE_Enriched::setup_data
Daniel Arndt [Thu, 12 Oct 2017 21:04:43 +0000 (23:04 +0200)]
Clarify FE_Enriched::setup_data

7 years agoFix memory leak in DoFHandler 5235/head
Daniel Arndt [Thu, 12 Oct 2017 21:02:55 +0000 (23:02 +0200)]
Fix memory leak in DoFHandler

7 years agoPrefer iterators to pointers. 5217/head
David Wells [Mon, 9 Oct 2017 17:52:25 +0000 (13:52 -0400)]
Prefer iterators to pointers.

7 years agoPrefer v.get() to &v[0] with smart pointers.
David Wells [Sun, 8 Oct 2017 19:16:15 +0000 (15:16 -0400)]
Prefer v.get() to &v[0] with smart pointers.

7 years agoGet rid of some intermediate variables.
David Wells [Sun, 8 Oct 2017 18:58:15 +0000 (14:58 -0400)]
Get rid of some intermediate variables.

7 years agoRealign some function arguments.
David Wells [Sat, 7 Oct 2017 00:43:27 +0000 (20:43 -0400)]
Realign some function arguments.

7 years agoDirectly use raw pointers instead of &v[0].
David Wells [Sat, 7 Oct 2017 00:43:13 +0000 (20:43 -0400)]
Directly use raw pointers instead of &v[0].

7 years agoPrefer v.data() to &v[0].
David Wells [Sat, 7 Oct 2017 00:42:55 +0000 (20:42 -0400)]
Prefer v.data() to &v[0].

7 years agoMerge pull request #5232 from davydden/user_project_source_dir
Timo Heister [Thu, 12 Oct 2017 17:23:52 +0000 (13:23 -0400)]
Merge pull request #5232 from davydden/user_project_source_dir

doc: explain how to use SOURCE_DIR from user tests

7 years agoProvide ExcSourceEqualsDestination with a message. 5227/head
Wolfgang Bangerth [Thu, 12 Oct 2017 15:11:10 +0000 (09:11 -0600)]
Provide ExcSourceEqualsDestination with a message.

7 years agodoc: explain how to use SOURCE_DIR from user tests 5232/head
Denis Davydov [Thu, 12 Oct 2017 12:58:15 +0000 (14:58 +0200)]
doc: explain how to use SOURCE_DIR from user tests

7 years agoMerge pull request #5131 from davydden/metis_yet_again
Wolfgang Bangerth [Thu, 12 Oct 2017 14:43:39 +0000 (08:43 -0600)]
Merge pull request #5131 from davydden/metis_yet_again

add yet another pair of outputs for Metis on macOS with Clang 9.0.0

7 years agoMerge pull request #5228 from tjhei/msvc_enable_w4661
David Wells [Wed, 11 Oct 2017 22:05:13 +0000 (18:05 -0400)]
Merge pull request #5228 from tjhei/msvc_enable_w4661

enable MSVC warning w4661

7 years agoMerge pull request #5231 from masterleinad/intel-warnings
Daniel Arndt [Wed, 11 Oct 2017 21:44:42 +0000 (23:44 +0200)]
Merge pull request #5231 from masterleinad/intel-warnings

Remove unused constructors in unnamed namespace

7 years agoMerge pull request #5229 from masterleinad/intel-warnings_3
Timo Heister [Wed, 11 Oct 2017 21:39:27 +0000 (17:39 -0400)]
Merge pull request #5229 from masterleinad/intel-warnings_3

Disable spuriuos intel warning

7 years agoBe more descriptive for the disabled remarks 5229/head
Daniel Arndt [Wed, 11 Oct 2017 20:29:01 +0000 (22:29 +0200)]
Be more descriptive for the disabled remarks

7 years agoMerge pull request #5230 from masterleinad/intel-warnings_2
Wolfgang Bangerth [Wed, 11 Oct 2017 19:52:43 +0000 (13:52 -0600)]
Merge pull request #5230 from masterleinad/intel-warnings_2

Remove meaningless type qualifier in pointer cast

7 years agoRemove meaningless type qualifier in pointer cast 5230/head
Daniel Arndt [Wed, 11 Oct 2017 18:45:11 +0000 (20:45 +0200)]
Remove meaningless type qualifier in pointer cast

7 years agoDisable spuriuos intel warning
Daniel Arndt [Wed, 11 Oct 2017 18:52:24 +0000 (20:52 +0200)]
Disable spuriuos intel warning

7 years agoRemove unused constructors in unnamed namespace 5231/head
Daniel Arndt [Wed, 11 Oct 2017 18:43:51 +0000 (20:43 +0200)]
Remove unused constructors in unnamed namespace

7 years agoenable MSVC warning w4661 5228/head
Timo Heister [Wed, 11 Oct 2017 17:29:54 +0000 (13:29 -0400)]
enable MSVC warning w4661

As discovered in #5225, these warnings are useful.

7 years agoReplace exception without message by ones with a message.
Wolfgang Bangerth [Wed, 11 Oct 2017 14:55:47 +0000 (08:55 -0600)]
Replace exception without message by ones with a message.

7 years agoReplace exception without message by ones with a message.
Wolfgang Bangerth [Wed, 11 Oct 2017 14:49:37 +0000 (08:49 -0600)]
Replace exception without message by ones with a message.

7 years agoReplace exception without message by ones with a message.
Wolfgang Bangerth [Wed, 11 Oct 2017 14:48:37 +0000 (08:48 -0600)]
Replace exception without message by ones with a message.

7 years agoMerge pull request #5226 from kronbichler/relax_shape_info_test
Wolfgang Bangerth [Wed, 11 Oct 2017 15:02:21 +0000 (09:02 -0600)]
Merge pull request #5226 from kronbichler/relax_shape_info_test

Relax polynomial degree in ShapeInfo test

7 years agoRelax polynomial degree in ShapeInfo test. 5226/head
Martin Kronbichler [Wed, 11 Oct 2017 09:08:39 +0000 (11:08 +0200)]
Relax polynomial degree in ShapeInfo test.

7 years agoMerge pull request #5223 from bangerth/typo
David Wells [Wed, 11 Oct 2017 01:24:22 +0000 (21:24 -0400)]
Merge pull request #5223 from bangerth/typo

Fix a typo.

7 years agoMerge pull request #5224 from bangerth/doc
David Wells [Wed, 11 Oct 2017 01:23:59 +0000 (21:23 -0400)]
Merge pull request #5224 from bangerth/doc

Update documentation of LogStream::push().

7 years agoUpdate documentation of LogStream::push(). 5224/head
Wolfgang Bangerth [Tue, 10 Oct 2017 23:01:51 +0000 (17:01 -0600)]
Update documentation of LogStream::push().

7 years agoFix a typo. 5223/head
Wolfgang Bangerth [Tue, 10 Oct 2017 22:58:53 +0000 (16:58 -0600)]
Fix a typo.

7 years agoMerge pull request #5114 from tcclevenger/sharedtria_mg_dofs
Wolfgang Bangerth [Tue, 10 Oct 2017 22:56:55 +0000 (16:56 -0600)]
Merge pull request #5114 from tcclevenger/sharedtria_mg_dofs

Add distribute_mg_dof functionality for a parallel::shared::Triangulation

7 years agoMerge pull request #5222 from drwells/deprecate-boundary-classes
Wolfgang Bangerth [Tue, 10 Oct 2017 18:55:07 +0000 (12:55 -0600)]
Merge pull request #5222 from drwells/deprecate-boundary-classes

Formally deprecate the Boundary classes.

7 years agoadd distribute_mg_dofs for shared::Triangulation 5114/head
tcclevenger [Tue, 19 Sep 2017 23:19:14 +0000 (19:19 -0400)]
add distribute_mg_dofs for shared::Triangulation

7 years agoFormally deprecate the Boundary classes. 5222/head
David Wells [Tue, 10 Oct 2017 17:46:59 +0000 (13:46 -0400)]
Formally deprecate the Boundary classes.

7 years agoMerge pull request #5220 from masterleinad/fix_intel_tests_1
Wolfgang Bangerth [Tue, 10 Oct 2017 15:11:34 +0000 (09:11 -0600)]
Merge pull request #5220 from masterleinad/fix_intel_tests_1

Fix tests by increasing the precision

7 years agoMerge pull request #5221 from masterleinad/fix_intel_tests_2
Wolfgang Bangerth [Tue, 10 Oct 2017 15:10:43 +0000 (09:10 -0600)]
Merge pull request #5221 from masterleinad/fix_intel_tests_2

Use std::initializer_list instead of variadic constructor in tests

7 years agoFix tests by increasing precision 5220/head
Daniel Arndt [Tue, 10 Oct 2017 14:49:36 +0000 (16:49 +0200)]
Fix tests by increasing precision

7 years agoUse std::initializer_list instead of variadic constructor in tests 5221/head
Daniel Arndt [Tue, 10 Oct 2017 14:54:17 +0000 (16:54 +0200)]
Use std::initializer_list instead of variadic constructor in tests

7 years agoMerge pull request #5212 from kronbichler/feeval_vector_access_assert
Martin Kronbichler [Tue, 10 Oct 2017 07:42:59 +0000 (09:42 +0200)]
Merge pull request #5212 from kronbichler/feeval_vector_access_assert

Add assertion regarding vector access in FEEvaluation.

7 years agoMerge pull request #5201 from bangerth/logstream
Daniel Arndt [Tue, 10 Oct 2017 00:32:33 +0000 (02:32 +0200)]
Merge pull request #5201 from bangerth/logstream

Replace logstream.push/pop by Logstream::Prefix.


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