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https://gitweb.dealii.org/ - dealii.git/log
Timo Heister [Wed, 5 Jun 2013 18:30:53 +0000 (18:30 +0000)]
rename header from abstract_linear_algebra to generic_linear_algebra
git-svn-id: https://svn.dealii.org/branches/branch_unify_linear_algebra@29765
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Timo Heister [Wed, 5 Jun 2013 18:27:06 +0000 (18:27 +0000)]
merge from mainline
git-svn-id: https://svn.dealii.org/branches/branch_unify_linear_algebra@29764
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Timo Heister [Wed, 5 Jun 2013 17:31:41 +0000 (17:31 +0000)]
make tester happy
git-svn-id: https://svn.dealii.org/trunk@29760
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Bruno Turcksin [Wed, 5 Jun 2013 15:43:14 +0000 (15:43 +0000)]
Output files for two tests are different for 32bit and 64bit. Put 32bit version of the files back into mainline.
git-svn-id: https://svn.dealii.org/trunk@29759
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Matthias Maier [Wed, 5 Jun 2013 15:24:35 +0000 (15:24 +0000)]
Fix a compilation regression
git-svn-id: https://svn.dealii.org/trunk@29758
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Bruno Turcksin [Wed, 5 Jun 2013 15:20:09 +0000 (15:20 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@29757
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Matthias Maier [Wed, 5 Jun 2013 15:06:35 +0000 (15:06 +0000)]
Update config.h.in
git-svn-id: https://svn.dealii.org/trunk@29756
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Matthias Maier [Wed, 5 Jun 2013 14:49:59 +0000 (14:49 +0000)]
CMake: Some small changes for DEAL_II_WITH_64BIT_INDICES
- Bugfix: Prevent DEAL_II_FORCE_AUTODETECTION from unsetting
DEAL_II_WITH_64BIT_INDICES
- Also document DEAL_II_WITH_64BIT_INDICES in
doc/development/Config.sample
- Do not mark DEAL_II_WITH_64BIT_INDICES as advanced as it already shows
up in the summary and detailes logs.
git-svn-id: https://svn.dealii.org/trunk@29755
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Matthias Maier [Wed, 5 Jun 2013 14:30:24 +0000 (14:30 +0000)]
CMake: Small cleanup: Use OPTION(...) instead of SET(BOOL ...)
git-svn-id: https://svn.dealii.org/trunk@29754
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Bruno Turcksin [Wed, 5 Jun 2013 13:50:55 +0000 (13:50 +0000)]
Merge branch_bigger_global_dof_indices_4 back into mainline.
git-svn-id: https://svn.dealii.org/trunk@29753
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Matthias Maier [Wed, 5 Jun 2013 12:03:17 +0000 (12:03 +0000)]
CMake: Fix Typo in FindMUMPS.cmake, fix issue 60
git-svn-id: https://svn.dealii.org/trunk@29752
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Bruno Turcksin [Tue, 4 Jun 2013 18:46:07 +0000 (18:46 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29751
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Bruno Turcksin [Tue, 4 Jun 2013 14:51:17 +0000 (14:51 +0000)]
Use typedef instead of #if #else.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29750
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Bruno Turcksin [Tue, 4 Jun 2013 14:44:57 +0000 (14:44 +0000)]
Fix a bug when using 32bits global indices.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29749
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Martin Kronbichler [Tue, 4 Jun 2013 06:17:47 +0000 (06:17 +0000)]
Adjust formula.
git-svn-id: https://svn.dealii.org/trunk@29746
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Martin Kronbichler [Tue, 4 Jun 2013 06:11:19 +0000 (06:11 +0000)]
Increase size of stabilization parameter to get stable solutions at large times.
git-svn-id: https://svn.dealii.org/trunk@29745
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Bruno Turcksin [Mon, 3 Jun 2013 20:52:54 +0000 (20:52 +0000)]
Fix a bug in sparse_matrix.template.h
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29744
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Bruno Turcksin [Mon, 3 Jun 2013 19:53:37 +0000 (19:53 +0000)]
Fix a bug in distribute_mg_dofs.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29743
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Wolfgang Bangerth [Mon, 3 Jun 2013 18:15:12 +0000 (18:15 +0000)]
Fix location of a semicolon so that it doesn't trip up the compiler.
git-svn-id: https://svn.dealii.org/trunk@29742
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Guido Kanschat [Mon, 3 Jun 2013 15:05:26 +0000 (15:05 +0000)]
Scott Miller's patch adding the unique_faces option
git-svn-id: https://svn.dealii.org/trunk@29741
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Bruno Turcksin [Mon, 3 Jun 2013 14:09:16 +0000 (14:09 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29740
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Toby D. Young [Mon, 3 Jun 2013 11:32:45 +0000 (11:32 +0000)]
Syntax tweak
git-svn-id: https://svn.dealii.org/trunk@29739
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Toby D. Young [Mon, 3 Jun 2013 10:33:47 +0000 (10:33 +0000)]
Deal kindly with PETSC_USE_COMPLEX in SLEPcWrappers.
git-svn-id: https://svn.dealii.org/trunk@29738
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Toby D. Young [Mon, 3 Jun 2013 10:33:11 +0000 (10:33 +0000)]
Deal kindly with PETSC_USE_COMPLEX in PETScWrappers.
git-svn-id: https://svn.dealii.org/trunk@29737
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Toby D. Young [Mon, 3 Jun 2013 10:01:02 +0000 (10:01 +0000)]
Deal with PETSC_USE_COMPLEX in PETScWrappers.
git-svn-id: https://svn.dealii.org/trunk@29736
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Wolfgang Bangerth [Mon, 3 Jun 2013 04:41:31 +0000 (04:41 +0000)]
Fix previous change.
git-svn-id: https://svn.dealii.org/trunk@29735
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Wolfgang Bangerth [Mon, 3 Jun 2013 04:25:55 +0000 (04:25 +0000)]
Catch exceptions also in WorkStream, similar to the recent change to tasks.
git-svn-id: https://svn.dealii.org/trunk@29734
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Timo Heister [Mon, 3 Jun 2013 00:45:26 +0000 (00:45 +0000)]
fix tests
git-svn-id: https://svn.dealii.org/branches/branch_unify_linear_algebra@29733
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Timo Heister [Mon, 3 Jun 2013 00:30:01 +0000 (00:30 +0000)]
update test
git-svn-id: https://svn.dealii.org/trunk@29732
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Timo Heister [Sun, 2 Jun 2013 23:51:29 +0000 (23:51 +0000)]
step-50: clean up, comparison with AMG
git-svn-id: https://svn.dealii.org/trunk@29731
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Timo Heister [Sun, 2 Jun 2013 23:07:17 +0000 (23:07 +0000)]
work on fixing multigrid in parallel
git-svn-id: https://svn.dealii.org/trunk@29730
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Timo Heister [Sun, 2 Jun 2013 22:22:01 +0000 (22:22 +0000)]
update test
git-svn-id: https://svn.dealii.org/trunk@29729
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Timo Heister [Sun, 2 Jun 2013 21:00:24 +0000 (21:00 +0000)]
disallow get_dof_indices() and a few others for nonactive cells
git-svn-id: https://svn.dealii.org/trunk@29728
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Wolfgang Bangerth [Sun, 2 Jun 2013 18:13:30 +0000 (18:13 +0000)]
More gracefully handle the case that an exception is thrown on a task created by Threads::new_task. Unfortunately, I could not come up with a way to write a test for this case :-(
git-svn-id: https://svn.dealii.org/trunk@29727
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Timo Heister [Sun, 2 Jun 2013 15:46:27 +0000 (15:46 +0000)]
merge from mainline
git-svn-id: https://svn.dealii.org/branches/branch_unify_linear_algebra@29726
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Timo Heister [Sat, 1 Jun 2013 20:33:00 +0000 (20:33 +0000)]
add some ignores
git-svn-id: https://svn.dealii.org/trunk@29725
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Timo Heister [Sat, 1 Jun 2013 20:31:25 +0000 (20:31 +0000)]
fix a bunch of tests
git-svn-id: https://svn.dealii.org/trunk@29724
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Timo Heister [Sat, 1 Jun 2013 20:24:19 +0000 (20:24 +0000)]
fix another spot where we ask an inactive cell for the subdomain
git-svn-id: https://svn.dealii.org/trunk@29723
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Timo Heister [Sat, 1 Jun 2013 20:23:49 +0000 (20:23 +0000)]
missed one directory with svn:ignores for cmake temp files
git-svn-id: https://svn.dealii.org/trunk@29722
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Timo Heister [Sat, 1 Jun 2013 19:53:58 +0000 (19:53 +0000)]
add cmake temp files to the ignores in the example directories, because we often do insource builds of the examples
git-svn-id: https://svn.dealii.org/trunk@29721
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Timo Heister [Sat, 1 Jun 2013 19:24:44 +0000 (19:24 +0000)]
make a lot more tests work
git-svn-id: https://svn.dealii.org/trunk@29720
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Timo Heister [Sat, 1 Jun 2013 19:10:23 +0000 (19:10 +0000)]
attempt to fix failing multigrid tests (is_locally_owned only works with active cells now)
git-svn-id: https://svn.dealii.org/trunk@29719
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Wolfgang Bangerth [Sat, 1 Jun 2013 01:19:31 +0000 (01:19 +0000)]
Move default initialization to a central location.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29718
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Wolfgang Bangerth [Sat, 1 Jun 2013 01:15:33 +0000 (01:15 +0000)]
Add some documentation.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29717
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Bruno Turcksin [Sat, 1 Jun 2013 01:15:06 +0000 (01:15 +0000)]
Timo's fix for cmake output.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29716
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Wolfgang Bangerth [Sat, 1 Jun 2013 01:10:38 +0000 (01:10 +0000)]
Add DEAL_II_WITH_64BIT_INDICES to the list of variables that are cached.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29715
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Timo Heister [Sat, 1 Jun 2013 00:50:37 +0000 (00:50 +0000)]
merge from mainline
git-svn-id: https://svn.dealii.org/branches/branch_unify_linear_algebra@29714
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Wolfgang Bangerth [Sat, 1 Jun 2013 00:42:54 +0000 (00:42 +0000)]
Update output.
git-svn-id: https://svn.dealii.org/trunk@29713
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Bruno Turcksin [Sat, 1 Jun 2013 00:38:29 +0000 (00:38 +0000)]
Use an existing macro to set the default indices to 32bit.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29712
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Timo Heister [Sat, 1 Jun 2013 00:24:08 +0000 (00:24 +0000)]
also delete mpi OK files in make clean
git-svn-id: https://svn.dealii.org/trunk@29711
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Timo Heister [Sat, 1 Jun 2013 00:22:23 +0000 (00:22 +0000)]
fix svg out that with new subdomain changes
git-svn-id: https://svn.dealii.org/trunk@29710
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Bruno Turcksin [Sat, 1 Jun 2013 00:20:15 +0000 (00:20 +0000)]
By default uses 32bit indices.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29709
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Timo Heister [Sat, 1 Jun 2013 00:03:48 +0000 (00:03 +0000)]
update tests to produce output on each cpu
git-svn-id: https://svn.dealii.org/trunk@29708
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Timo Heister [Fri, 31 May 2013 23:57:15 +0000 (23:57 +0000)]
fix last commit
git-svn-id: https://svn.dealii.org/trunk@29707
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Timo Heister [Fri, 31 May 2013 23:54:31 +0000 (23:54 +0000)]
make sure to close the file
git-svn-id: https://svn.dealii.org/trunk@29706
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Bruno Turcksin [Fri, 31 May 2013 23:25:45 +0000 (23:25 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29705
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Timo Heister [Fri, 31 May 2013 23:08:39 +0000 (23:08 +0000)]
make test work
git-svn-id: https://svn.dealii.org/trunk@29704
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Bruno Turcksin [Fri, 31 May 2013 23:06:26 +0000 (23:06 +0000)]
Fix a test.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29703
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Timo Heister [Fri, 31 May 2013 23:00:36 +0000 (23:00 +0000)]
subdomainids should only work for active cells, enforce this. Also forbid is_artificial(), is_ghost(), and is_locally_owned() if not active.
git-svn-id: https://svn.dealii.org/trunk@29702
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Bruno Turcksin [Fri, 31 May 2013 22:58:10 +0000 (22:58 +0000)]
Add the preprocessor command to use 64bit global indices to CMake and check that PETSc and Trilinos are compatible with 64bit indices.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29701
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Timo Heister [Fri, 31 May 2013 22:34:35 +0000 (22:34 +0000)]
update test
git-svn-id: https://svn.dealii.org/trunk@29700
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Timo Heister [Fri, 31 May 2013 22:31:33 +0000 (22:31 +0000)]
tests should not use is_artificial() etc on cells that are not active
git-svn-id: https://svn.dealii.org/trunk@29699
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Timo Heister [Fri, 31 May 2013 22:13:52 +0000 (22:13 +0000)]
skip parts of loop in distribute_dofs() that is not necessary
git-svn-id: https://svn.dealii.org/trunk@29698
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Wolfgang Bangerth [Fri, 31 May 2013 21:53:39 +0000 (21:53 +0000)]
More doc updates.
git-svn-id: https://svn.dealii.org/trunk@29697
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Wolfgang Bangerth [Fri, 31 May 2013 21:46:31 +0000 (21:46 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@29696
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Wolfgang Bangerth [Fri, 31 May 2013 20:46:10 +0000 (20:46 +0000)]
Properly format comments.
git-svn-id: https://svn.dealii.org/trunk@29695
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Guido Kanschat [Fri, 31 May 2013 20:02:40 +0000 (20:02 +0000)]
yet another successful test
git-svn-id: https://svn.dealii.org/trunk@29694
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Guido Kanschat [Fri, 31 May 2013 19:22:50 +0000 (19:22 +0000)]
towards mixed cg/dg mg
git-svn-id: https://svn.dealii.org/trunk@29693
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Bruno Turcksin [Fri, 31 May 2013 18:08:15 +0000 (18:08 +0000)]
Fix some tests.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29692
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Timo Heister [Fri, 31 May 2013 17:54:06 +0000 (17:54 +0000)]
merge from mainline
git-svn-id: https://svn.dealii.org/branches/branch_unify_linear_algebra@29691
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Timo Heister [Fri, 31 May 2013 17:47:51 +0000 (17:47 +0000)]
merge from mainline
git-svn-id: https://svn.dealii.org/branches/branch_unify_linear_algebra@29690
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Guido Kanschat [Fri, 31 May 2013 16:40:56 +0000 (16:40 +0000)]
remove double loop by two outputs
git-svn-id: https://svn.dealii.org/trunk@29689
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Bruno Turcksin [Fri, 31 May 2013 16:21:46 +0000 (16:21 +0000)]
Merge from mainline + fix a bug in petsc_vector_base.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29688
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Martin Kronbichler [Fri, 31 May 2013 16:01:25 +0000 (16:01 +0000)]
Better way for recording the exception: Only print its name, not the full info in order to avoid differences in encoding anonymous namespaces and future changes in function names
git-svn-id: https://svn.dealii.org/trunk@29687
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Bruno Turcksin [Fri, 31 May 2013 15:59:41 +0000 (15:59 +0000)]
Fix a bug in trilinos_vector_base.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29686
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Martin Kronbichler [Fri, 31 May 2013 15:49:44 +0000 (15:49 +0000)]
Adjust output
git-svn-id: https://svn.dealii.org/trunk@29685
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Bruno Turcksin [Fri, 31 May 2013 15:43:28 +0000 (15:43 +0000)]
Fix some tests.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29684
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Bruno Turcksin [Fri, 31 May 2013 14:16:07 +0000 (14:16 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29683
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Martin Kronbichler [Fri, 31 May 2013 12:51:37 +0000 (12:51 +0000)]
Remove stray typename
git-svn-id: https://svn.dealii.org/trunk@29682
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Martin Kronbichler [Fri, 31 May 2013 12:49:55 +0000 (12:49 +0000)]
Fix test.
git-svn-id: https://svn.dealii.org/trunk@29681
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Martin Kronbichler [Fri, 31 May 2013 11:37:50 +0000 (11:37 +0000)]
Fix uninitialized memory.
git-svn-id: https://svn.dealii.org/trunk@29680
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Martin Kronbichler [Fri, 31 May 2013 09:48:26 +0000 (09:48 +0000)]
Fix a few bugs with distribute. constraint_matrix_trilinos_bug/ncpu_10 still not working. Try to figure it out.
git-svn-id: https://svn.dealii.org/trunk@29679
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Martin Kronbichler [Fri, 31 May 2013 08:14:35 +0000 (08:14 +0000)]
Make distribute() work properly with parallel::distributed::Vector. Also cleanup in extracting locally owned dofs of Trilinos vector. Distributing constraints with parallel::distributed::Vector has become simpler now, so use that in step-48.
git-svn-id: https://svn.dealii.org/trunk@29678
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Wolfgang Bangerth [Fri, 31 May 2013 04:53:43 +0000 (04:53 +0000)]
Make ConstraintMatrix::distribute also work for block vectors. Needs a couple extra functions in the PETSc block vectors.
git-svn-id: https://svn.dealii.org/trunk@29677
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Wolfgang Bangerth [Fri, 31 May 2013 04:51:41 +0000 (04:51 +0000)]
Remove tests that now no longer make sense.
git-svn-id: https://svn.dealii.org/trunk@29676
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Wolfgang Bangerth [Fri, 31 May 2013 04:21:10 +0000 (04:21 +0000)]
Improve documentation slightly.
git-svn-id: https://svn.dealii.org/trunk@29675
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Wolfgang Bangerth [Thu, 30 May 2013 22:29:18 +0000 (22:29 +0000)]
Check in a revision of the ConstraintMatrix::distribute patch. I'm not sure it actually works but the network here is going to shut down in a few minutes and I'd like to have it sent to the tester. Will re-evaluate later today.
git-svn-id: https://svn.dealii.org/trunk@29674
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Timo Heister [Thu, 30 May 2013 21:47:19 +0000 (21:47 +0000)]
revert accidental change from r29647
git-svn-id: https://svn.dealii.org/trunk@29673
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Timo Heister [Thu, 30 May 2013 21:41:20 +0000 (21:41 +0000)]
revert accidental change from r29647
git-svn-id: https://svn.dealii.org/trunk@29672
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Timo Heister [Thu, 30 May 2013 20:06:47 +0000 (20:06 +0000)]
more work on petsc step-32, still crashing
git-svn-id: https://svn.dealii.org/branches/branch_unify_linear_algebra@29671
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Timo Heister [Thu, 30 May 2013 20:06:25 +0000 (20:06 +0000)]
add PETSc matrix copy_from
git-svn-id: https://svn.dealii.org/branches/branch_unify_linear_algebra@29670
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Wolfgang Bangerth [Thu, 30 May 2013 18:47:53 +0000 (18:47 +0000)]
Add necessary conversion.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29669
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Timo Heister [Thu, 30 May 2013 00:38:37 +0000 (00:38 +0000)]
update test output
git-svn-id: https://svn.dealii.org/trunk@29668
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Timo Heister [Thu, 30 May 2013 00:36:51 +0000 (00:36 +0000)]
fix test and output
git-svn-id: https://svn.dealii.org/trunk@29667
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Timo Heister [Thu, 30 May 2013 00:35:40 +0000 (00:35 +0000)]
add MPILogInitAll helper class for mpi tests
git-svn-id: https://svn.dealii.org/trunk@29666
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Bruno Turcksin [Wed, 29 May 2013 23:08:52 +0000 (23:08 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29665
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Martin Kronbichler [Wed, 29 May 2013 08:09:34 +0000 (08:09 +0000)]
Need to call update_ghost_values with the current scheme of distribute
git-svn-id: https://svn.dealii.org/trunk@29664
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Bruno Turcksin [Tue, 28 May 2013 20:43:53 +0000 (20:43 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29663
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Wolfgang Bangerth [Tue, 28 May 2013 20:00:27 +0000 (20:00 +0000)]
Revert changes to ConstraintMatrix::distribute, see bug #51.
git-svn-id: https://svn.dealii.org/trunk@29662
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Guido Kanschat [Tue, 28 May 2013 16:05:02 +0000 (16:05 +0000)]
filter out trilinos and petsc if not configured
git-svn-id: https://svn.dealii.org/trunk@29661
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