]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
6 years agoAdd Adol-C math header
Jean-Paul Pelteret [Thu, 16 Nov 2017 07:33:00 +0000 (08:33 +0100)]
Add Adol-C math header

This imports the Adol-C math operations into standard namespace. It
gives us the ability to use them (e.g. sqrt) within the Tensor class,
and it also allows the user to write generic code and switch between AD
number types.

6 years agoMerge pull request #5392 from jppelteret/ad-numbers_and_type_traits
Jean-Paul Pelteret [Thu, 16 Nov 2017 07:26:39 +0000 (08:26 +0100)]
Merge pull request #5392 from jppelteret/ad-numbers_and_type_traits

 Implement type traits and helper classes for AD numbers

6 years agoMerge pull request #5471 from masterleinad/avoid_ub
Martin Kronbichler [Thu, 16 Nov 2017 07:06:28 +0000 (08:06 +0100)]
Merge pull request #5471 from masterleinad/avoid_ub

Guard some calls to memcpy, memset and memmove to avoid undefined behavior

6 years agoAdd tests for number traits classes: Sacado 5392/head
Jean-Paul Pelteret [Fri, 3 Nov 2017 19:15:41 +0000 (20:15 +0100)]
Add tests for number traits classes: Sacado

6 years agoAdd tests for number traits classes: Adol-C
Jean-Paul Pelteret [Fri, 3 Nov 2017 19:15:24 +0000 (20:15 +0100)]
Add tests for number traits classes: Adol-C

6 years agoImplement type traits and helper classes for Sacado numbers
Jean-Paul Pelteret [Fri, 3 Nov 2017 13:18:11 +0000 (14:18 +0100)]
Implement type traits and helper classes for Sacado numbers

6 years agoImplement type traits and helper classes for Adol-C numbers
Jean-Paul Pelteret [Fri, 3 Nov 2017 13:08:31 +0000 (14:08 +0100)]
Implement type traits and helper classes for Adol-C numbers

6 years agoAdd core headers for internally supported AD numbers
Jean-Paul Pelteret [Fri, 3 Nov 2017 12:47:04 +0000 (13:47 +0100)]
Add core headers for internally supported AD numbers

- Type codes
- Type traits

6 years agoAdd a unifying header for auto-differentation.
Jean-Paul Pelteret [Wed, 15 Nov 2017 12:44:12 +0000 (13:44 +0100)]
Add a unifying header for auto-differentation.

6 years agoAdd initial outline of documentation for the AD/SD module.
Jean-Paul Pelteret [Wed, 15 Nov 2017 12:37:18 +0000 (13:37 +0100)]
Add initial outline of documentation for the AD/SD module.

6 years agoMerge pull request #5472 from gassmoeller/fix_find_active_cell_around_point
Daniel Arndt [Thu, 16 Nov 2017 00:01:05 +0000 (01:01 +0100)]
Merge pull request #5472 from gassmoeller/fix_find_active_cell_around_point

Fix search for the cell of a vertex

6 years agoGuard some calls to memcpy, memset and memmove to avoid undefined behavior 5471/head
Daniel Arndt [Wed, 15 Nov 2017 15:50:21 +0000 (16:50 +0100)]
Guard some calls to memcpy, memset and memmove to avoid undefined behavior

6 years agoFix search for a vertex location 5472/head
Rene Gassmoeller [Wed, 15 Nov 2017 21:10:51 +0000 (14:10 -0700)]
Fix search for a vertex location

6 years agoMerge pull request #5457 from davydden/tests/sundials_fixes
Luca Heltai [Wed, 15 Nov 2017 16:37:17 +0000 (17:37 +0100)]
Merge pull request #5457 from davydden/tests/sundials_fixes

try to fix sundials tests

6 years agoMerge pull request #5467 from davydden/fix_deprecated_bug
Denis Davydov [Wed, 15 Nov 2017 12:08:55 +0000 (13:08 +0100)]
Merge pull request #5467 from davydden/fix_deprecated_bug

fix deprecation bug

6 years agofix deprecation bug 5467/head
Denis Davydov [Wed, 15 Nov 2017 10:52:52 +0000 (11:52 +0100)]
fix deprecation bug

6 years agoMerge pull request #5464 from vishalkenchan/rol/vector_adaptor
Daniel Arndt [Wed, 15 Nov 2017 09:05:59 +0000 (10:05 +0100)]
Merge pull request #5464 from vishalkenchan/rol/vector_adaptor

suppress use of ROL for older versions of Trilinos

6 years agoMerge pull request #5465 from sairajat/AssertionAdd
Daniel Arndt [Wed, 15 Nov 2017 09:05:13 +0000 (10:05 +0100)]
Merge pull request #5465 from sairajat/AssertionAdd

Added Assert in fe_values.h to ensure fe_values object is reinited to cell

6 years agoChecked Indentation 5465/head
RAJAT ARORA [Tue, 14 Nov 2017 18:18:10 +0000 (13:18 -0500)]
Checked Indentation

6 years agoMerge pull request #5463 from jppelteret/sacado_complex_rad_guard
Jean-Paul Pelteret [Tue, 14 Nov 2017 18:15:13 +0000 (19:15 +0100)]
Merge pull request #5463 from jppelteret/sacado_complex_rad_guard

Detect a compiler bug that prevents compilation of complex Sacado::Rad.

6 years agoAdded Assert in fe_values.h to ensure fe_values object is reinited to a cell
RAJAT ARORA [Tue, 14 Nov 2017 18:13:13 +0000 (13:13 -0500)]
Added Assert in fe_values.h to ensure fe_values object is reinited to a cell

6 years agorecommend enabling ROL package while building Trilinos 5464/head
vishalkenchan [Tue, 14 Nov 2017 17:45:24 +0000 (18:45 +0100)]
recommend enabling ROL package while building Trilinos

6 years agosuppress use of ROL for older versions of Trilinos
vishalkenchan [Tue, 14 Nov 2017 16:35:14 +0000 (17:35 +0100)]
suppress use of ROL for older versions of Trilinos

6 years agoMerge pull request #5462 from masterleinad/fix_test_project_03 5264/head
Denis Davydov [Tue, 14 Nov 2017 14:54:51 +0000 (15:54 +0100)]
Merge pull request #5462 from masterleinad/fix_test_project_03

Fix numerics/project_03

6 years agoMerge pull request #5459 from masterleinad/use_c++14_deprecated
Timo Heister [Tue, 14 Nov 2017 14:48:46 +0000 (09:48 -0500)]
Merge pull request #5459 from masterleinad/use_c++14_deprecated

Use c++14's [[deprecated]] if possible

6 years agoDetect a compiler bug that prevents compilation of complex Sacado::Rad. 5463/head
Jean-Paul Pelteret [Tue, 14 Nov 2017 14:31:45 +0000 (15:31 +0100)]
Detect a compiler bug that prevents compilation of complex Sacado::Rad.

6 years agoMerge pull request #5443 from davydden/vtu_binary
Wolfgang Bangerth [Tue, 14 Nov 2017 13:37:24 +0000 (06:37 -0700)]
Merge pull request #5443 from davydden/vtu_binary

filter XML binary output in some tests

6 years agoFix numerics/project_03 5462/head
Daniel Arndt [Tue, 14 Nov 2017 13:04:10 +0000 (14:04 +0100)]
Fix numerics/project_03

6 years agofix sundials tests 5457/head
Denis Davydov [Mon, 13 Nov 2017 20:59:12 +0000 (21:59 +0100)]
fix sundials tests

6 years agoMerge pull request #5461 from jppelteret/fix_5455
Jean-Paul Pelteret [Tue, 14 Nov 2017 08:32:38 +0000 (09:32 +0100)]
Merge pull request #5461 from jppelteret/fix_5455

Add header to tests using Sacado::Rad.

6 years agoUse [[deprecated]] if available 5459/head
Daniel Arndt [Mon, 13 Nov 2017 22:40:06 +0000 (23:40 +0100)]
Use [[deprecated]] if available

6 years agoAdd header to tests using Sacado::Rad. 5461/head
Jean-Paul Pelteret [Tue, 14 Nov 2017 06:35:45 +0000 (07:35 +0100)]
Add header to tests using Sacado::Rad.

For some older versions of Trilinos, the header for templated
Sacado::Rad numbers is missing from Sacado.hpp.

6 years agoMerge pull request #5385 from tjhei/prm_escape_latex
Wolfgang Bangerth [Tue, 14 Nov 2017 05:11:40 +0000 (22:11 -0700)]
Merge pull request #5385 from tjhei/prm_escape_latex

 escape characters in LaTeX format of ParameterHandler

6 years agoFix position of DEAL_II_DEPRECATED
Daniel Arndt [Mon, 13 Nov 2017 21:39:27 +0000 (22:39 +0100)]
Fix position of DEAL_II_DEPRECATED

6 years agofilter out binary data from XML output for some data_out tests 5443/head
Denis Davydov [Sun, 12 Nov 2017 19:47:02 +0000 (20:47 +0100)]
filter out binary data from XML output for some data_out tests

6 years agoMerge pull request #5452 from masterleinad/merge_grid_tools
Wolfgang Bangerth [Mon, 13 Nov 2017 17:13:31 +0000 (10:13 -0700)]
Merge pull request #5452 from masterleinad/merge_grid_tools

Merge parallel::GridTools into GridTools

6 years agocleanup a few data_out_base_vtu tests
Denis Davydov [Sun, 12 Nov 2017 19:20:05 +0000 (20:20 +0100)]
cleanup a few data_out_base_vtu tests

6 years agoUpdate changelog entries 5452/head
Daniel Arndt [Mon, 13 Nov 2017 14:56:33 +0000 (15:56 +0100)]
Update changelog entries

6 years agoReintroduce distributed/grid_tools.h for a deprecation warning
Daniel Arndt [Mon, 13 Nov 2017 14:51:39 +0000 (15:51 +0100)]
Reintroduce distributed/grid_tools.h for a deprecation warning

6 years agoMerge pull request #5447 from masterleinad/deprecate_vector_view
Wolfgang Bangerth [Mon, 13 Nov 2017 14:38:45 +0000 (07:38 -0700)]
Merge pull request #5447 from masterleinad/deprecate_vector_view

Deprecate VectorView

6 years agoMerge pull request #5453 from tjhei/petsc_lu_doc
Wolfgang Bangerth [Mon, 13 Nov 2017 14:35:26 +0000 (07:35 -0700)]
Merge pull request #5453 from tjhei/petsc_lu_doc

update documentation for PETSc PreconditionLU

6 years agoupdate documentation for PETSc PreconditionLU 5453/head
Timo Heister [Mon, 13 Nov 2017 14:05:16 +0000 (09:05 -0500)]
update documentation for PETSc PreconditionLU

6 years agoMerge distributed/grid_tools into grid/grid_tools
Daniel Arndt [Mon, 13 Nov 2017 11:37:24 +0000 (12:37 +0100)]
Merge distributed/grid_tools into grid/grid_tools

6 years agoRemove 'parallel' prefix in distributed/grid_tools
Daniel Arndt [Sun, 12 Nov 2017 20:35:40 +0000 (21:35 +0100)]
Remove 'parallel' prefix in distributed/grid_tools

6 years agoMerge pull request #5448 from bangerth/add-instantiation
Martin Kronbichler [Mon, 13 Nov 2017 13:33:35 +0000 (14:33 +0100)]
Merge pull request #5448 from bangerth/add-instantiation

Add a missing instantiation.

6 years agoMerge pull request #5444 from masterleinad/fix_interface_matrix_entry
Daniel Arndt [Mon, 13 Nov 2017 00:42:42 +0000 (01:42 +0100)]
Merge pull request #5444 from masterleinad/fix_interface_matrix_entry

Fix missing include file in multigrid/interface_matrix_entry_01

6 years agoMove deprecation declaration at the end 5447/head
Daniel Arndt [Sun, 12 Nov 2017 23:59:58 +0000 (00:59 +0100)]
Move deprecation declaration at the end

6 years agoAdd a test. 5448/head
Wolfgang Bangerth [Sun, 12 Nov 2017 23:30:29 +0000 (16:30 -0700)]
Add a test.

6 years agoAdd changelog entry.
Wolfgang Bangerth [Sun, 12 Nov 2017 23:13:41 +0000 (16:13 -0700)]
Add changelog entry.

6 years agoAdd missing instantiation of function.
Wolfgang Bangerth [Sun, 12 Nov 2017 23:13:34 +0000 (16:13 -0700)]
Add missing instantiation of function.

6 years agoDeprecate VectorView
Daniel Arndt [Sun, 12 Nov 2017 21:09:31 +0000 (22:09 +0100)]
Deprecate VectorView

6 years agoMerge pull request #5445 from drwells/update-gdbinit
Wolfgang Bangerth [Sun, 12 Nov 2017 21:11:19 +0000 (14:11 -0700)]
Merge pull request #5445 from drwells/update-gdbinit

Update the GDB pretty-printer.

6 years agoMerge pull request #5446 from drwells/convert-to-utf8
Wolfgang Bangerth [Sun, 12 Nov 2017 21:10:48 +0000 (14:10 -0700)]
Merge pull request #5446 from drwells/convert-to-utf8

Prefer UTF-8 to latin-1.

6 years agoPrefer UTF-8 to latin-1. 5446/head
David Wells [Sun, 12 Nov 2017 20:56:13 +0000 (15:56 -0500)]
Prefer UTF-8 to latin-1.

6 years agoUpdate the GDB pretty-printer. 5445/head
David Wells [Sun, 12 Nov 2017 20:52:15 +0000 (15:52 -0500)]
Update the GDB pretty-printer.

The data array variable was renamed from 'val' to 'values' in 2faae204c26.

6 years agoFix missing include filed in multigrid/interface_matrix_entry_01 5444/head
Daniel Arndt [Sun, 12 Nov 2017 20:35:40 +0000 (21:35 +0100)]
Fix missing include filed in multigrid/interface_matrix_entry_01

6 years agoMerge pull request #5442 from davydden/fix_illegal_character
David Wells [Sun, 12 Nov 2017 19:33:57 +0000 (14:33 -0500)]
Merge pull request #5442 from davydden/fix_illegal_character

fix illegal character (<F6> instead of oe)

6 years agofix illegal character (<F6> instead of oe) 5442/head
Denis Davydov [Sun, 12 Nov 2017 19:26:45 +0000 (20:26 +0100)]
fix illegal character (<F6> instead of oe)

6 years agoMerge pull request #5439 from kronbichler/extend_trilinos_direct_solver
Jean-Paul Pelteret [Fri, 10 Nov 2017 21:02:53 +0000 (22:02 +0100)]
Merge pull request #5439 from kronbichler/extend_trilinos_direct_solver

 Let Trilinos direct solver use given factorization with LA::distributed::Vector

6 years agomove to namespace 5385/head
Timo Heister [Fri, 10 Nov 2017 19:23:16 +0000 (14:23 -0500)]
move to namespace

6 years agoMerge pull request #5434 from tjhei/test_dos_2_unix
Timo Heister [Fri, 10 Nov 2017 18:03:17 +0000 (13:03 -0500)]
Merge pull request #5434 from tjhei/test_dos_2_unix

fix dos formatted files in contrib/utilities/indent

6 years agoMerge pull request #5380 from vishalkenchan/rol/vector_adaptor
Jean-Paul Pelteret [Fri, 10 Nov 2017 15:46:45 +0000 (16:46 +0100)]
Merge pull request #5380 from vishalkenchan/rol/vector_adaptor

Using Trilinos/ROL library

6 years agoAdd test. 5439/head
Martin Kronbichler [Fri, 10 Nov 2017 14:33:31 +0000 (15:33 +0100)]
Add test.

6 years agoChangelog
Martin Kronbichler [Fri, 10 Nov 2017 13:52:33 +0000 (14:52 +0100)]
Changelog

6 years agoEnable Trilinos direct solvers with LA::distributed::Vector.
Martin Kronbichler [Fri, 10 Nov 2017 13:50:09 +0000 (14:50 +0100)]
Enable Trilinos direct solvers with LA::distributed::Vector.

6 years agoadded rol tests 5380/head
vishalkenchan [Fri, 10 Nov 2017 09:15:36 +0000 (10:15 +0100)]
added rol tests

6 years agoadd a vector adaptor to use Trilinos/ROL library; added cmake variable DEAL_II_TRILIN...
vishalkenchan [Fri, 10 Nov 2017 09:15:12 +0000 (10:15 +0100)]
add a vector adaptor to use Trilinos/ROL library; added cmake variable DEAL_II_TRILINOS_WITH_ROL

6 years agofix dos formatted files in contrib/utilities/indent 5434/head
Timo Heister [Thu, 9 Nov 2017 18:58:51 +0000 (13:58 -0500)]
fix dos formatted files in contrib/utilities/indent

6 years agoMerge pull request #5408 from kronbichler/speedup_spherical_manifold
Martin Kronbichler [Thu, 9 Nov 2017 20:19:07 +0000 (21:19 +0100)]
Merge pull request #5408 from kronbichler/speedup_spherical_manifold

Speed up SphericalManifold::get_new_point

6 years agoMerge pull request #5433 from bangerth/fix-inst.in
Timo Heister [Thu, 9 Nov 2017 18:27:19 +0000 (13:27 -0500)]
Merge pull request #5433 from bangerth/fix-inst.in

Rename class groups in template-arguments.in.

6 years agoMerge pull request #5430 from bangerth/new-tests
Denis Davydov [Thu, 9 Nov 2017 17:30:45 +0000 (18:30 +0100)]
Merge pull request #5430 from bangerth/new-tests

Add tests for VectorTools::integrate_difference() using complex data types.

6 years agoRename class groups in template-arguments.in. 5433/head
Wolfgang Bangerth [Thu, 9 Nov 2017 15:08:54 +0000 (08:08 -0700)]
Rename class groups in template-arguments.in.

The previous name no longer adequately represented what these classes were. Fix this.

6 years agoMerge pull request #5428 from bangerth/set-perms
Timo Heister [Thu, 9 Nov 2017 16:06:42 +0000 (11:06 -0500)]
Merge pull request #5428 from bangerth/set-perms

Set file permissions in the indentation script.

6 years agoMerge pull request #5431 from bangerth/add-changelog
Denis Davydov [Thu, 9 Nov 2017 15:06:22 +0000 (16:06 +0100)]
Merge pull request #5431 from bangerth/add-changelog

Add a changelog entry for complex-valued vectors.

6 years agoAdd a changelog entry for complex-valued vectors. 5431/head
Wolfgang Bangerth [Thu, 9 Nov 2017 15:00:24 +0000 (08:00 -0700)]
Add a changelog entry for complex-valued vectors.

6 years agoAdd tests for VectorTools::integrate_difference() using complex data types. 5430/head
Wolfgang Bangerth [Thu, 9 Nov 2017 14:52:31 +0000 (07:52 -0700)]
Add tests for VectorTools::integrate_difference() using complex data types.

6 years agoMinor adjustments to one test.
Wolfgang Bangerth [Thu, 9 Nov 2017 14:52:03 +0000 (07:52 -0700)]
Minor adjustments to one test.

6 years agoMerge pull request #5419 from bangerth/more-complex
Martin Kronbichler [Thu, 9 Nov 2017 08:17:33 +0000 (09:17 +0100)]
Merge pull request #5419 from bangerth/more-complex

Allow outputting complex-valued data through DataOut.

6 years agoMerge pull request #5429 from bangerth/instantiations
Jean-Paul Pelteret [Thu, 9 Nov 2017 05:36:45 +0000 (06:36 +0100)]
Merge pull request #5429 from bangerth/instantiations

Instantiate some more functions for the codim-1 case.

6 years agoInstantiate some more functions for the codim-1 case. 5429/head
Wolfgang Bangerth [Thu, 9 Nov 2017 00:22:10 +0000 (17:22 -0700)]
Instantiate some more functions for the codim-1 case.

While there, also simplify the file slightly.

6 years agoSet file permissions in the indentation script. 5428/head
Wolfgang Bangerth [Wed, 8 Nov 2017 20:15:18 +0000 (13:15 -0700)]
Set file permissions in the indentation script.

6 years agoAdd more tests that check both real and complex-valued output at the same time. 5419/head
Wolfgang Bangerth [Wed, 8 Nov 2017 19:56:36 +0000 (12:56 -0700)]
Add more tests that check both real and complex-valued output at the same time.

6 years agoSimplify code a bit.
Wolfgang Bangerth [Wed, 8 Nov 2017 19:52:26 +0000 (12:52 -0700)]
Simplify code a bit.

6 years agoMerge pull request #5423 from drwells/fix-unity-build
Jean-Paul Pelteret [Wed, 8 Nov 2017 19:37:22 +0000 (20:37 +0100)]
Merge pull request #5423 from drwells/fix-unity-build

Disambiguate parallel::GridTools and GridTools.

6 years agoMerge pull request #5424 from bangerth/fix-test
Matthias Maier [Wed, 8 Nov 2017 17:46:01 +0000 (11:46 -0600)]
Merge pull request #5424 from bangerth/fix-test

Fix test.

6 years agoMerge pull request #5425 from bangerth/fix-line-endings
Matthias Maier [Wed, 8 Nov 2017 17:45:42 +0000 (11:45 -0600)]
Merge pull request #5425 from bangerth/fix-line-endings

Consistently use UNIX line endings.

6 years agoConsistently use UNIX line endings. 5425/head
Wolfgang Bangerth [Wed, 8 Nov 2017 17:42:04 +0000 (10:42 -0700)]
Consistently use UNIX line endings.

6 years agoConvert DOS to Unix line endings. 5424/head
Wolfgang Bangerth [Wed, 8 Nov 2017 17:31:47 +0000 (10:31 -0700)]
Convert DOS to Unix line endings.

6 years agoFix test output.
Wolfgang Bangerth [Wed, 8 Nov 2017 17:29:06 +0000 (10:29 -0700)]
Fix test output.

6 years agoMerge pull request #5391 from jppelteret/ad-product_types
Matthias Maier [Wed, 8 Nov 2017 17:27:55 +0000 (11:27 -0600)]
Merge pull request #5391 from jppelteret/ad-product_types

Implement more product types for AD numbers

6 years agoMerge pull request #5422 from tjhei/doxygen_deprecated
Wolfgang Bangerth [Wed, 8 Nov 2017 16:45:52 +0000 (09:45 -0700)]
Merge pull request #5422 from tjhei/doxygen_deprecated

doxygen: fix deprecated function signatures

6 years agoInclude Adol-C product types header in fe_values 5391/head
Jean-Paul Pelteret [Wed, 8 Nov 2017 16:36:08 +0000 (17:36 +0100)]
Include Adol-C product types header in fe_values

Fixes #5420

6 years agoDisambiguate parallel::GridTools and GridTools. 5423/head
David Wells [Wed, 8 Nov 2017 16:30:56 +0000 (11:30 -0500)]
Disambiguate parallel::GridTools and GridTools.

6 years agoImplement ProductType for Adol-C numbers
Jean-Paul Pelteret [Fri, 3 Nov 2017 18:56:53 +0000 (19:56 +0100)]
Implement ProductType for Adol-C numbers

6 years agoAdd support and implement ProductType for Trilinos Sacado::Rad numbers
Jean-Paul Pelteret [Fri, 3 Nov 2017 18:56:01 +0000 (19:56 +0100)]
Add support and implement ProductType for Trilinos Sacado::Rad numbers

6 years agoMerge pull request #5421 from jppelteret/fix_5420
Jean-Paul Pelteret [Wed, 8 Nov 2017 15:30:03 +0000 (16:30 +0100)]
Merge pull request #5421 from jppelteret/fix_5420

Fix expansion for Adol-C numbers

6 years agodoxygen: fix deprecatedfunction signatures 5422/head
Timo Heister [Wed, 8 Nov 2017 14:49:44 +0000 (09:49 -0500)]
doxygen: fix deprecatedfunction signatures

Deprecated functions show up with a trailing "1". Fix this.

Example: has_generalized_face_support_points() in http://www.dealii.org/developer/doxygen/deal.II/classFiniteElement.html

6 years agobreak
Timo Heister [Wed, 8 Nov 2017 14:31:16 +0000 (09:31 -0500)]
break

6 years agoupdate
Timo Heister [Wed, 8 Nov 2017 14:22:44 +0000 (09:22 -0500)]
update

6 years agoFix expansion for Adol-C numbers 5421/head
Jean-Paul Pelteret [Wed, 8 Nov 2017 13:40:40 +0000 (14:40 +0100)]
Fix expansion for Adol-C numbers


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