]>
https://gitweb.dealii.org/ - dealii-svn.git/log
turcksin [Mon, 16 Dec 2013 17:17:47 +0000 (17:17 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@32028
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turcksin [Mon, 16 Dec 2013 17:04:36 +0000 (17:04 +0000)]
Add ParalutionWrappers::Vector in the list of SERIAL_VECTOR and start the modifications to use the new Vector through the whole library.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@32027
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bangerth [Mon, 16 Dec 2013 13:10:34 +0000 (13:10 +0000)]
Add some documentation.
git-svn-id: https://svn.dealii.org/trunk@32026
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kronbichler [Mon, 16 Dec 2013 10:48:29 +0000 (10:48 +0000)]
Undo accidental check-in.
git-svn-id: https://svn.dealii.org/trunk@32025
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kronbichler [Mon, 16 Dec 2013 10:47:08 +0000 (10:47 +0000)]
Fix project_boundary values for small values of function.
git-svn-id: https://svn.dealii.org/trunk@32024
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maier [Sun, 15 Dec 2013 19:21:56 +0000 (19:21 +0000)]
CMake: Improve default config; Rename Config.sample to config.sample
git-svn-id: https://svn.dealii.org/trunk@32023
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maier [Sun, 15 Dec 2013 16:51:05 +0000 (16:51 +0000)]
CMake: Hide advanced options
git-svn-id: https://svn.dealii.org/trunk@32021
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maier [Sun, 15 Dec 2013 16:42:22 +0000 (16:42 +0000)]
fix typo
git-svn-id: https://svn.dealii.org/trunk@32020
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maier [Sun, 15 Dec 2013 16:37:29 +0000 (16:37 +0000)]
CMake: Big compilation variables cleanup
- Be consistent in naming: All compiler / linker flag variables and
compile definition variables now start with DEAL_II_*
- For compatibility: Rename the corresponding CMAKE_* variables to
DEAL_II_* and log the fact in the configure output.
git-svn-id: https://svn.dealii.org/trunk@32019
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maier [Sun, 15 Dec 2013 15:23:42 +0000 (15:23 +0000)]
Reenable TBB_DO_ASSERT=1 when configuring tbb
git-svn-id: https://svn.dealii.org/trunk@32018
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maier [Sun, 15 Dec 2013 15:23:40 +0000 (15:23 +0000)]
Testsuite: Override the tbb assertion handler when TBB_DO_ASSERT is set.
The override does print the original tbb error message and after that
reenables abort_on_exception and show_stacktrace and emits a deal.II
exception.
git-svn-id: https://svn.dealii.org/trunk@32017
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kronbichler [Sun, 15 Dec 2013 10:39:52 +0000 (10:39 +0000)]
Disable debug output.
git-svn-id: https://svn.dealii.org/trunk@32016
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heister [Sun, 15 Dec 2013 08:37:27 +0000 (08:37 +0000)]
make tests pass for now (meshworker loop needs more work)
git-svn-id: https://svn.dealii.org/trunk@32015
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heister [Sun, 15 Dec 2013 08:33:37 +0000 (08:33 +0000)]
remove left over comments in meshworker
git-svn-id: https://svn.dealii.org/trunk@32014
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bangerth [Sun, 15 Dec 2013 08:00:17 +0000 (08:00 +0000)]
Remove reference to authors@dealii.org since that address does not exist any more.
git-svn-id: https://svn.dealii.org/trunk@32013
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kronbichler [Sat, 14 Dec 2013 16:10:22 +0000 (16:10 +0000)]
Apply patch by Andrew Baker.
git-svn-id: https://svn.dealii.org/trunk@32009
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maier [Sat, 14 Dec 2013 13:18:09 +0000 (13:18 +0000)]
Bugfix: Do not define TBB_DO_ASSERT=1.
This is an internal definition; the original build system does not define
it for building the default library, so we shouldn't do either.
git-svn-id: https://svn.dealii.org/trunk@32006
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heister [Sat, 14 Dec 2013 11:08:01 +0000 (11:08 +0000)]
add CellID::operator<
git-svn-id: https://svn.dealii.org/trunk@32005
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heister [Sat, 14 Dec 2013 11:07:06 +0000 (11:07 +0000)]
test: fix error estimator norm output
git-svn-id: https://svn.dealii.org/trunk@32004
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heister [Sat, 14 Dec 2013 11:06:49 +0000 (11:06 +0000)]
test: fix error estimator norm output
git-svn-id: https://svn.dealii.org/trunk@32003
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maier [Fri, 13 Dec 2013 23:52:21 +0000 (23:52 +0000)]
Testsuite: Bugfix: These tests need ZLIB
git-svn-id: https://svn.dealii.org/trunk@32001
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maier [Fri, 13 Dec 2013 23:45:07 +0000 (23:45 +0000)]
Testsuite: Bugfix: These tests need LAPACK
git-svn-id: https://svn.dealii.org/trunk@31999
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maier [Fri, 13 Dec 2013 23:38:38 +0000 (23:38 +0000)]
Cleanup: Use "DEAL_II_WITH_*" instead of legacy "DEAL_II_USE_*"
git-svn-id: https://svn.dealii.org/trunk@31998
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turcksin [Fri, 13 Dec 2013 21:33:31 +0000 (21:33 +0000)]
Read version number for Paralution.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@31996
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maier [Fri, 13 Dec 2013 20:47:49 +0000 (20:47 +0000)]
Testsuite: Only use hostname output up to first period "."
git-svn-id: https://svn.dealii.org/trunk@31995
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maier [Fri, 13 Dec 2013 20:42:41 +0000 (20:42 +0000)]
Remove all empty directories (git svn --rmdir next time...)
git-svn-id: https://svn.dealii.org/trunk@31994
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maier [Fri, 13 Dec 2013 20:40:08 +0000 (20:40 +0000)]
Bugfix: Several fixes for bundled tbb
- Compile bundled tbb with "-D__TBB_BUILD=1" instead of "-D__TBB_BUILD"
- Remove non functional build rules for Windows/Cygwin and ia64, disable
bundled tbb support instead
- Remove unnecessary files to minimize source file footprint
git-svn-id: https://svn.dealii.org/trunk@31993
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turcksin [Fri, 13 Dec 2013 20:32:36 +0000 (20:32 +0000)]
Add some of Paralutions solvers and add tests.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@31992
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kanschat [Fri, 13 Dec 2013 15:56:34 +0000 (15:56 +0000)]
introduce LoopControl
git-svn-id: https://svn.dealii.org/trunk@31989
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heister [Fri, 13 Dec 2013 15:01:13 +0000 (15:01 +0000)]
improve documentation
git-svn-id: https://svn.dealii.org/trunk@31988
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heister [Fri, 13 Dec 2013 14:46:57 +0000 (14:46 +0000)]
timer 2 is annoying to test, fix that by not printing the timing information
git-svn-id: https://svn.dealii.org/trunk@31987
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heister [Fri, 13 Dec 2013 12:45:24 +0000 (12:45 +0000)]
fix typos
git-svn-id: https://svn.dealii.org/trunk@31986
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turcksin [Fri, 13 Dec 2013 01:20:51 +0000 (01:20 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@31985
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kanschat [Thu, 12 Dec 2013 17:36:02 +0000 (17:36 +0000)]
reformat docu
git-svn-id: https://svn.dealii.org/trunk@31984
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bangerth [Thu, 12 Dec 2013 17:34:45 +0000 (17:34 +0000)]
Add a comment.
git-svn-id: https://svn.dealii.org/trunk@31983
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kanschat [Thu, 12 Dec 2013 15:12:34 +0000 (15:12 +0000)]
LoopControl class introduced
git-svn-id: https://svn.dealii.org/trunk@31982
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bangerth [Thu, 12 Dec 2013 15:10:45 +0000 (15:10 +0000)]
Compress text some more.
git-svn-id: https://svn.dealii.org/trunk@31981
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bangerth [Thu, 12 Dec 2013 15:10:15 +0000 (15:10 +0000)]
Some whitespace issues.
git-svn-id: https://svn.dealii.org/trunk@31980
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kanschat [Thu, 12 Dec 2013 14:47:38 +0000 (14:47 +0000)]
change documentation
git-svn-id: https://svn.dealii.org/trunk@31979
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heister [Thu, 12 Dec 2013 11:47:10 +0000 (11:47 +0000)]
add missing instantiations
git-svn-id: https://svn.dealii.org/trunk@31977
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heister [Thu, 12 Dec 2013 11:37:39 +0000 (11:37 +0000)]
add missing instantiations
git-svn-id: https://svn.dealii.org/trunk@31975
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maier [Wed, 11 Dec 2013 12:29:16 +0000 (12:29 +0000)]
Bugfix: Remove debug code in petsc_solver.cc that disables deallog output.
git-svn-id: https://svn.dealii.org/trunk@31973
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maier [Tue, 10 Dec 2013 10:42:56 +0000 (10:42 +0000)]
Add a configure time check DEAL_II_MAC_OSX_C99_BUG
This is a small configure time check for a regression on Mac OS-X 10.9
where gcc in C++11 mode is unable to link to certain C standard library
functions defined in ctype.h and similar. In this case just disable C++11
support.
git-svn-id: https://svn.dealii.org/trunk@31970
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maier [Tue, 10 Dec 2013 09:41:01 +0000 (09:41 +0000)]
Testsuite: Adjust output of umfpack_04 for Intel
git-svn-id: https://svn.dealii.org/trunk@31968
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kronbichler [Tue, 10 Dec 2013 08:13:34 +0000 (08:13 +0000)]
Adjust test cases for change in 31950: do not output number of actual nonzeros in advection matrix because they are sensitive to roundoff and are irrelevant to the test. Output more digits.
git-svn-id: https://svn.dealii.org/trunk@31966
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heister [Tue, 10 Dec 2013 03:38:26 +0000 (03:38 +0000)]
reference new 8.0 publication
git-svn-id: https://svn.dealii.org/trunk@31965
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maier [Mon, 9 Dec 2013 21:35:40 +0000 (21:35 +0000)]
Testsuite: Filter out branch in run_testsuite.cmake correctly
git-svn-id: https://svn.dealii.org/trunk@31963
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maier [Mon, 9 Dec 2013 20:27:52 +0000 (20:27 +0000)]
Testsuite: Only run matrix_free/step-48 if mpi is enabled
git-svn-id: https://svn.dealii.org/trunk@31961
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heister [Mon, 9 Dec 2013 19:04:53 +0000 (19:04 +0000)]
fix hanging nodes in step-26 and make the mesh a somewhat finer
git-svn-id: https://svn.dealii.org/trunk@31960
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turcksin [Mon, 9 Dec 2013 18:29:24 +0000 (18:29 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@31958
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heister [Mon, 9 Dec 2013 15:29:15 +0000 (15:29 +0000)]
release step 9.
git-svn-id: https://svn.dealii.org/trunk@31957
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heister [Mon, 9 Dec 2013 15:27:49 +0000 (15:27 +0000)]
change version number in changes.h
git-svn-id: https://svn.dealii.org/trunk@31955
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heister [Mon, 9 Dec 2013 15:06:11 +0000 (15:06 +0000)]
bump version
git-svn-id: https://svn.dealii.org/trunk@31954
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kanschat [Mon, 9 Dec 2013 14:48:05 +0000 (14:48 +0000)]
update output to new tangential jump operator
git-svn-id: https://svn.dealii.org/trunk@31951
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kronbichler [Mon, 9 Dec 2013 11:35:24 +0000 (11:35 +0000)]
Need to disable CellSimilarity when the number of threads is greater than one because otherwise we get different mapping data (on the order of roundoff) on cells that are translations of each other. When using WorkStream, this might result in different matrices that are eventually generated
git-svn-id: https://svn.dealii.org/trunk@31950
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maier [Sun, 8 Dec 2013 17:48:48 +0000 (17:48 +0000)]
Documentation: Remove obsolete header entry to deal.css in mod_header.pl
git-svn-id: https://svn.dealii.org/trunk@31949
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maier [Sun, 8 Dec 2013 17:14:12 +0000 (17:14 +0000)]
Revert the last two commits because RULE_LAUNCH_COMPILE is not supported by
the Ninja Generator...
git-svn-id: https://svn.dealii.org/trunk@31948
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heister [Sun, 8 Dec 2013 17:14:09 +0000 (17:14 +0000)]
fix link
git-svn-id: https://svn.dealii.org/trunk@31947
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heister [Sun, 8 Dec 2013 17:12:55 +0000 (17:12 +0000)]
fix links
git-svn-id: https://svn.dealii.org/trunk@31946
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bangerth [Sun, 8 Dec 2013 17:06:04 +0000 (17:06 +0000)]
Add a couple more words.
git-svn-id: https://svn.dealii.org/trunk@31945
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bangerth [Sun, 8 Dec 2013 17:05:48 +0000 (17:05 +0000)]
Separate initials as in most places.
git-svn-id: https://svn.dealii.org/trunk@31944
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heister [Sun, 8 Dec 2013 17:00:17 +0000 (17:00 +0000)]
fix comment style in css
git-svn-id: https://svn.dealii.org/trunk@31943
0785d39b -7218-0410-832d-
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heister [Sun, 8 Dec 2013 16:08:20 +0000 (16:08 +0000)]
remove leftover code in quicktest cmake file
git-svn-id: https://svn.dealii.org/trunk@31942
0785d39b -7218-0410-832d-
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maier [Sun, 8 Dec 2013 16:01:48 +0000 (16:01 +0000)]
Quicktests: Remove target-OK prior to compilation
Remove target-OK prior to compilation of target with the help of
RULE_LAUNCH_COMPILE. This is a cleaner solution because the removal is only
triggered if target is actually (re)built.
Additionally, reintroduce the ADD_CUSTOM_COMMAND and ADD_CUSTOM_TARGET
splitting so that also quicktests only rerun if they actually have to...
git-svn-id: https://svn.dealii.org/trunk@31941
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heister [Sun, 8 Dec 2013 15:49:12 +0000 (15:49 +0000)]
add documentation
git-svn-id: https://svn.dealii.org/trunk@31940
0785d39b -7218-0410-832d-
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heister [Sun, 8 Dec 2013 15:28:38 +0000 (15:28 +0000)]
fix typo
git-svn-id: https://svn.dealii.org/trunk@31939
0785d39b -7218-0410-832d-
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heister [Sun, 8 Dec 2013 15:27:58 +0000 (15:27 +0000)]
fix dead link
git-svn-id: https://svn.dealii.org/trunk@31938
0785d39b -7218-0410-832d-
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maier [Sun, 8 Dec 2013 14:09:48 +0000 (14:09 +0000)]
fix typo
git-svn-id: https://svn.dealii.org/trunk@31937
0785d39b -7218-0410-832d-
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maier [Sun, 8 Dec 2013 09:13:45 +0000 (09:13 +0000)]
Testsuite: Only run fe_q_dg0 if UMFPACK is available
git-svn-id: https://svn.dealii.org/trunk@31936
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heister [Sun, 8 Dec 2013 02:49:30 +0000 (02:49 +0000)]
quicktests: revert part of r31930
git-svn-id: https://svn.dealii.org/trunk@31935
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heister [Sun, 8 Dec 2013 02:36:05 +0000 (02:36 +0000)]
update changes and news for release
git-svn-id: https://svn.dealii.org/trunk@31934
0785d39b -7218-0410-832d-
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heister [Sun, 8 Dec 2013 02:30:25 +0000 (02:30 +0000)]
update authors list
git-svn-id: https://svn.dealii.org/trunk@31933
0785d39b -7218-0410-832d-
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heister [Sun, 8 Dec 2013 02:15:54 +0000 (02:15 +0000)]
reindent using astyle
git-svn-id: https://svn.dealii.org/trunk@31932
0785d39b -7218-0410-832d-
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heister [Sun, 8 Dec 2013 01:54:59 +0000 (01:54 +0000)]
fix typo
git-svn-id: https://svn.dealii.org/trunk@31931
0785d39b -7218-0410-832d-
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maier [Sun, 8 Dec 2013 01:50:50 +0000 (01:50 +0000)]
Quicktests: Fix and cleanup the hack in quicktests :-]
git-svn-id: https://svn.dealii.org/trunk@31930
0785d39b -7218-0410-832d-
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maier [Sun, 8 Dec 2013 00:54:11 +0000 (00:54 +0000)]
Cosmetic change: Fix $Id$ in two places
git-svn-id: https://svn.dealii.org/trunk@31929
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heister [Sun, 8 Dec 2013 00:48:40 +0000 (00:48 +0000)]
quicktests: force the deletion of old -OK files
git-svn-id: https://svn.dealii.org/trunk@31928
0785d39b -7218-0410-832d-
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heister [Sun, 8 Dec 2013 00:08:59 +0000 (00:08 +0000)]
better output for 'make test' and provide some helpful error messages
git-svn-id: https://svn.dealii.org/trunk@31927
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maier [Sat, 7 Dec 2013 22:09:42 +0000 (22:09 +0000)]
*sigh*
git-svn-id: https://svn.dealii.org/trunk@31926
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maier [Sat, 7 Dec 2013 22:06:37 +0000 (22:06 +0000)]
Fix typo introduced in previous commit *blush*
git-svn-id: https://svn.dealii.org/trunk@31925
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maier [Sat, 7 Dec 2013 22:04:33 +0000 (22:04 +0000)]
Forgot one...
git-svn-id: https://svn.dealii.org/trunk@31924
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maier [Sat, 7 Dec 2013 22:03:20 +0000 (22:03 +0000)]
Testsuite: Bugfix: Only run thread_local_storage tests if deal.II is configured with thread support
git-svn-id: https://svn.dealii.org/trunk@31923
0785d39b -7218-0410-832d-
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maier [Sat, 7 Dec 2013 21:50:41 +0000 (21:50 +0000)]
Testsuite: Bugfix: Silence a warning introduced in r31919
git-svn-id: https://svn.dealii.org/trunk@31922
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heister [Sat, 7 Dec 2013 20:55:04 +0000 (20:55 +0000)]
tutorial page fixes
git-svn-id: https://svn.dealii.org/trunk@31921
0785d39b -7218-0410-832d-
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heister [Sat, 7 Dec 2013 20:53:38 +0000 (20:53 +0000)]
add publications
git-svn-id: https://svn.dealii.org/trunk@31920
0785d39b -7218-0410-832d-
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maier [Sat, 7 Dec 2013 19:36:22 +0000 (19:36 +0000)]
Testsuite: Bugfix: Use the correct mpirun executable as found by FindMPI.cmake
git-svn-id: https://svn.dealii.org/trunk@31919
0785d39b -7218-0410-832d-
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bangerth [Sat, 7 Dec 2013 17:39:54 +0000 (17:39 +0000)]
Convert a couple of places where we intended 'unsigned int' but now had 'size_type'.
git-svn-id: https://svn.dealii.org/trunk@31918
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bangerth [Sat, 7 Dec 2013 16:30:01 +0000 (16:30 +0000)]
A couple of fixes to make things compile again in 64-bit mode after the change to full_matrix.h a couple of days ago.
git-svn-id: https://svn.dealii.org/trunk@31917
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maier [Sat, 7 Dec 2013 03:02:14 +0000 (03:02 +0000)]
CMake: Several bugfixes in FindTRILINOS.cmake
- Use again the FIND_PACKAGE mechanism that has the right search order for
project configurations
- Print error condition in configure phase so that one has a clue what is
going wrong...
git-svn-id: https://svn.dealii.org/trunk@31916
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turcksin [Fri, 6 Dec 2013 23:20:56 +0000 (23:20 +0000)]
Add tests for ParalutionWrappers::Vector.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@31915
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maier [Fri, 6 Dec 2013 18:15:52 +0000 (18:15 +0000)]
Testsuite: Provide alternative output for q_dg0_projection_01 with icc
git-svn-id: https://svn.dealii.org/trunk@31914
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maier [Fri, 6 Dec 2013 16:52:31 +0000 (16:52 +0000)]
Testsuite: Provide alternative output for icc
The tests in question test whether it is possible to find a vertex lying
exactly on an edge or line, respectively. Unfortunately this is not stable
under more aggressive optimization.
git-svn-id: https://svn.dealii.org/trunk@31913
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maier [Fri, 6 Dec 2013 16:11:49 +0000 (16:11 +0000)]
Revert "Testsuite: Reenable compiler version injection on non Linux platforms"
git-svn-id: https://svn.dealii.org/trunk@31912
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kanschat [Fri, 6 Dec 2013 15:29:19 +0000 (15:29 +0000)]
revert last commit
git-svn-id: https://svn.dealii.org/trunk@31911
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maier [Fri, 6 Dec 2013 14:04:44 +0000 (14:04 +0000)]
Remove 'official' Windows support from the readme.
git-svn-id: https://svn.dealii.org/trunk@31910
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maier [Fri, 6 Dec 2013 13:58:10 +0000 (13:58 +0000)]
Testsuite: Reenable compiler version injection on non Linux platforms
git-svn-id: https://svn.dealii.org/trunk@31909
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maier [Fri, 6 Dec 2013 13:37:03 +0000 (13:37 +0000)]
Documentation: Update some documentation
git-svn-id: https://svn.dealii.org/trunk@31908
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kronbichler [Fri, 6 Dec 2013 09:14:28 +0000 (09:14 +0000)]
Fix latex formula
git-svn-id: https://svn.dealii.org/trunk@31907
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bangerth [Fri, 6 Dec 2013 04:12:23 +0000 (04:12 +0000)]
Add a couple of previously missing specializations.
git-svn-id: https://svn.dealii.org/trunk@31906
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bangerth [Fri, 6 Dec 2013 04:10:38 +0000 (04:10 +0000)]
In the conversion to 64-bit indices, a lot of classes acquired a local typedef 'size_type'. In some cases, it was aliased to types::global_dof_index, but this may have been a mistake. One such example is FullMatrix, which definitely doesn't need 64-bit indices. Revert this and go back to 'unsigned int' for the local size_type type.
git-svn-id: https://svn.dealii.org/trunk@31905
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