]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
5 years agofix doxygen formula errors
Timo Heister [Tue, 14 May 2019 21:17:56 +0000 (15:17 -0600)]
fix doxygen formula errors

5 years agoMerge pull request #8168 from drwells/unify-subscriptor-log
Martin Kronbichler [Tue, 14 May 2019 15:35:12 +0000 (17:35 +0200)]
Merge pull request #8168 from drwells/unify-subscriptor-log

Unify the log entry for Subscriptor.

5 years agoUnify the log entry for Subscriptor. 8168/head
David Wells [Tue, 14 May 2019 14:23:24 +0000 (10:23 -0400)]
Unify the log entry for Subscriptor.

The remark about rvalue references is no longer correct since we
switched, after the ban on rvalue references, to storing a
std::string (which permits rvalues once more).

5 years agoMerge pull request #8166 from tamiko/update_version_requirement
Martin Kronbichler [Tue, 14 May 2019 14:16:42 +0000 (16:16 +0200)]
Merge pull request #8166 from tamiko/update_version_requirement

Require the current version of deal.II.

5 years agoRequire the current version of deal.II. 8166/head
Matthias Maier [Tue, 14 May 2019 14:07:37 +0000 (09:07 -0500)]
Require the current version of deal.II.

5 years agoMerge pull request #8165 from tamiko/master
Martin Kronbichler [Tue, 14 May 2019 14:05:04 +0000 (16:05 +0200)]
Merge pull request #8165 from tamiko/master

update VERSION

5 years agoupdate VERSION 8165/head
Matthias Maier [Tue, 14 May 2019 13:59:02 +0000 (08:59 -0500)]
update VERSION

5 years agoMerge pull request #8164 from tamiko/update_tag_file
Martin Kronbichler [Tue, 14 May 2019 13:56:07 +0000 (15:56 +0200)]
Merge pull request #8164 from tamiko/update_tag_file

Update TAG file

5 years agoMerge pull request #8163 from tamiko/update-changes-file
Martin Kronbichler [Tue, 14 May 2019 13:52:16 +0000 (15:52 +0200)]
Merge pull request #8163 from tamiko/update-changes-file

Replace individual files by one changelog for the whole release.

5 years agoUpdate TAG file 8164/head
Matthias Maier [Tue, 14 May 2019 13:49:07 +0000 (08:49 -0500)]
Update TAG file

5 years agoRemove now obsolete files. 8163/head
Matthias Maier [Tue, 14 May 2019 13:46:30 +0000 (08:46 -0500)]
Remove now obsolete files.

5 years agoUpdate the changelog file for the release.
Matthias Maier [Tue, 14 May 2019 13:46:05 +0000 (08:46 -0500)]
Update the changelog file for the release.

5 years agoMerge pull request #8158 from kronbichler/fix_trilinos_precondition_test
Matthias Maier [Tue, 14 May 2019 12:47:41 +0000 (07:47 -0500)]
Merge pull request #8158 from kronbichler/fix_trilinos_precondition_test

Adapt test file for Trilinos IC precondition

5 years agoMerge pull request #8159 from kronbichler/fix_grid_tools_guess_pt_owner_02
Martin Kronbichler [Tue, 14 May 2019 12:42:30 +0000 (14:42 +0200)]
Merge pull request #8159 from kronbichler/fix_grid_tools_guess_pt_owner_02

Correct memory access in grid_tools_guess_pt_owner_02

5 years agoMerge pull request #8160 from jppelteret/ad-band_aid_sacado_test
Martin Kronbichler [Tue, 14 May 2019 12:26:16 +0000 (14:26 +0200)]
Merge pull request #8160 from jppelteret/ad-band_aid_sacado_test

Band-aid for a failing AD test

5 years agoBand-aid for a failing AD test 8160/head
Jean-Paul Pelteret [Tue, 14 May 2019 12:02:15 +0000 (14:02 +0200)]
Band-aid for a failing AD test

Sacado::Rad::Advar<Sacado::Fad::Dfad<double>> fails for the second derivatives (nan) with the current evaluation point. This fixes the test, but one still wonders what the underlying issue is :-/

5 years agoMerge pull request #8157 from kronbichler/improve-step-59
Bruno Turcksin [Tue, 14 May 2019 12:13:36 +0000 (08:13 -0400)]
Merge pull request #8157 from kronbichler/improve-step-59

Fix some typos in results of step-59

5 years agoMerge pull request #8154 from tamiko/deuglify_step_42
Martin Kronbichler [Tue, 14 May 2019 11:43:20 +0000 (13:43 +0200)]
Merge pull request #8154 from tamiko/deuglify_step_42

deuglify step-42

5 years agoMerge pull request #8151 from masterleinad/fix_icc_19_warning
Martin Kronbichler [Tue, 14 May 2019 10:53:17 +0000 (12:53 +0200)]
Merge pull request #8151 from masterleinad/fix_icc_19_warning

Avoid ICC-19 warning

5 years agoCorrect memory access in grid_tools_guess_pt_owner_02 8159/head
Martin Kronbichler [Tue, 14 May 2019 10:07:28 +0000 (12:07 +0200)]
Correct memory access in grid_tools_guess_pt_owner_02

5 years agoAdapt test file for Trilinos IC precondition 8158/head
Martin Kronbichler [Tue, 14 May 2019 09:10:03 +0000 (11:10 +0200)]
Adapt test file for Trilinos IC precondition

5 years agoFix some typos in results of step-59 8157/head
Martin Kronbichler [Tue, 14 May 2019 08:40:33 +0000 (10:40 +0200)]
Fix some typos in results of step-59

5 years agoMerge pull request #8135 from kronbichler/gcc9-warning-0
Martin Kronbichler [Tue, 14 May 2019 07:15:47 +0000 (09:15 +0200)]
Merge pull request #8135 from kronbichler/gcc9-warning-0

gcc9 warning: Provide copy constructor for class with operator=

5 years agoMerge pull request #8140 from tamiko/cppcheck-1
Timo Heister [Tue, 14 May 2019 05:23:09 +0000 (23:23 -0600)]
Merge pull request #8140 from tamiko/cppcheck-1

cppcheck: Fix include/deal.II/algorithms/general_data_storage.h

5 years agoMerge pull request #8155 from tjhei/tutorial_improvements
Matthias Maier [Tue, 14 May 2019 05:18:59 +0000 (00:18 -0500)]
Merge pull request #8155 from tjhei/tutorial_improvements

improve tutorial layouts

5 years agoimprove tutorial layouts 8155/head
Timo Heister [Tue, 14 May 2019 05:10:29 +0000 (23:10 -0600)]
improve tutorial layouts

- remove a TODO
- replace aspect URL and use ASPECT not Aspect
- fix some formulas
- use table headers

5 years agodeuglify step-42 8154/head
Matthias Maier [Tue, 14 May 2019 05:06:20 +0000 (00:06 -0500)]
deuglify step-42

5 years agoMerge pull request #8148 from drwells/disable-fp-exceptions-hdf5
Matthias Maier [Tue, 14 May 2019 04:18:55 +0000 (23:18 -0500)]
Merge pull request #8148 from drwells/disable-fp-exceptions-hdf5

Disable floating point exceptions in two HDF5 tests.

5 years agoAvoid ICC-19 warning 8151/head
Daniel Arndt [Tue, 14 May 2019 03:40:19 +0000 (05:40 +0200)]
Avoid ICC-19 warning

5 years agoMerge pull request #8150 from masterleinad/missing_header_symengine
David Wells [Tue, 14 May 2019 03:21:44 +0000 (23:21 -0400)]
Merge pull request #8150 from masterleinad/missing_header_symengine

Add missing header in symengine_tensor_operations.h

5 years agoAdd missing header in symengine_tensor_operations.h 8150/head
Daniel Arndt [Tue, 14 May 2019 03:02:38 +0000 (05:02 +0200)]
Add missing header in symengine_tensor_operations.h

5 years agoMerge pull request #8147 from kronbichler/fix_two_tests
Daniel Arndt [Tue, 14 May 2019 02:16:43 +0000 (22:16 -0400)]
Merge pull request #8147 from kronbichler/fix_two_tests

Make two tests more stable

5 years agoMerge pull request #8142 from drwells/cppcheck-9.1
Daniel Arndt [Tue, 14 May 2019 01:16:36 +0000 (21:16 -0400)]
Merge pull request #8142 from drwells/cppcheck-9.1

Cppcheck 9.1

5 years agoCreate vector before assigning 8135/head
Daniel Arndt [Mon, 13 May 2019 22:52:18 +0000 (00:52 +0200)]
Create vector before assigning

5 years agoMerge pull request #8149 from drwells/add-6774-changelog
Timo Heister [Mon, 13 May 2019 22:44:16 +0000 (16:44 -0600)]
Merge pull request #8149 from drwells/add-6774-changelog

Add a changelog entry for 6774.

5 years agoMerge pull request #8139 from tamiko/disable-gcc-9-warning
Matthias Maier [Mon, 13 May 2019 22:41:12 +0000 (17:41 -0500)]
Merge pull request #8139 from tamiko/disable-gcc-9-warning

Ignore -Wdeprecated-copy in external headers

5 years agofix changelog entry format 8149/head
Matthias Maier [Mon, 13 May 2019 22:34:56 +0000 (17:34 -0500)]
fix changelog entry format

5 years agoCppcheck: Fix general_data_storage.h 8140/head
Matthias Maier [Mon, 13 May 2019 21:23:10 +0000 (16:23 -0500)]
Cppcheck: Fix general_data_storage.h

5 years agoAdd a changelog entry for 6774.
David Wells [Mon, 13 May 2019 21:24:21 +0000 (17:24 -0400)]
Add a changelog entry for 6774.

5 years agoDisable floating point exceptions in two HDF5 tests. 8148/head
David Wells [Mon, 13 May 2019 21:03:37 +0000 (17:03 -0400)]
Disable floating point exceptions in two HDF5 tests.

5 years agoMerge pull request #8145 from masterleinad/warn_cuda_threads_native
Martin Kronbichler [Mon, 13 May 2019 19:56:43 +0000 (21:56 +0200)]
Merge pull request #8145 from masterleinad/warn_cuda_threads_native

Warn about using CUDA+Threads+march=native

5 years agocppcheck: initialize a member in the init list. 8142/head
David Wells [Mon, 13 May 2019 17:27:17 +0000 (13:27 -0400)]
cppcheck: initialize a member in the init list.

5 years agocppcheck: Pass a vector by reference.
David Wells [Mon, 13 May 2019 17:27:04 +0000 (13:27 -0400)]
cppcheck: Pass a vector by reference.

5 years agocppcheck: Match variable names in the header and source.
David Wells [Mon, 13 May 2019 17:25:14 +0000 (13:25 -0400)]
cppcheck: Match variable names in the header and source.

5 years agocppcheck: explicitly call a virtual function in a ctor.
David Wells [Mon, 13 May 2019 17:24:58 +0000 (13:24 -0400)]
cppcheck: explicitly call a virtual function in a ctor.

5 years agocppcheck: remove a duplicate static constant.
David Wells [Mon, 13 May 2019 14:58:24 +0000 (10:58 -0400)]
cppcheck: remove a duplicate static constant.

This is the same as the one in the base class.

5 years agoMake point comparison more stable in case of roundoff 8147/head
Martin Kronbichler [Mon, 13 May 2019 19:42:47 +0000 (21:42 +0200)]
Make point comparison more stable in case of roundoff

5 years agoAllow test with 48 iterations
Martin Kronbichler [Mon, 13 May 2019 19:42:25 +0000 (21:42 +0200)]
Allow test with 48 iterations

5 years agoAdd recommendation 8145/head
Daniel Arndt [Mon, 13 May 2019 19:31:15 +0000 (15:31 -0400)]
Add recommendation

5 years agoMerge pull request #8146 from tjhei/doxygen_style_tables
Martin Kronbichler [Mon, 13 May 2019 19:21:41 +0000 (21:21 +0200)]
Merge pull request #8146 from tjhei/doxygen_style_tables

doxygen style tables

5 years agoMerge pull request #8143 from tjhei/table_empty_lines
Martin Kronbichler [Mon, 13 May 2019 19:15:55 +0000 (21:15 +0200)]
Merge pull request #8143 from tjhei/table_empty_lines

remove empty lines in html tables

5 years agoMerge pull request #8141 from tamiko/cppcheck-2
Martin Kronbichler [Mon, 13 May 2019 18:58:16 +0000 (20:58 +0200)]
Merge pull request #8141 from tamiko/cppcheck-2

cppcheck: avoid an unused variable

5 years agouse doxygen style for html tables with border 8146/head
Timo Heister [Mon, 13 May 2019 18:08:00 +0000 (12:08 -0600)]
use doxygen style for html tables with border

5 years agoWarn about using CUDA+Threads+march=native
Daniel Arndt [Mon, 13 May 2019 17:53:23 +0000 (19:53 +0200)]
Warn about using CUDA+Threads+march=native

5 years agoremove newlines in tables 8143/head
Timo Heister [Mon, 13 May 2019 17:58:50 +0000 (11:58 -0600)]
remove newlines in tables

5 years agolower case html tables
Timo Heister [Mon, 13 May 2019 17:51:40 +0000 (11:51 -0600)]
lower case html tables

5 years agocppcheck: add an assertion.
David Wells [Mon, 13 May 2019 14:58:16 +0000 (10:58 -0400)]
cppcheck: add an assertion.

5 years agocppcheck: prefer ++i to i++
David Wells [Mon, 13 May 2019 14:58:02 +0000 (10:58 -0400)]
cppcheck: prefer ++i to i++

5 years agoMerge pull request #8128 from kronbichler/disable_simd_includes
Martin Kronbichler [Mon, 13 May 2019 16:37:04 +0000 (18:37 +0200)]
Merge pull request #8128 from kronbichler/disable_simd_includes

Disable intrinsics includes if DEAL_II_VECTORIZATION_LEVEL=0

5 years agoMerge pull request #8137 from tamiko/update-copyright
Martin Kronbichler [Mon, 13 May 2019 16:30:36 +0000 (18:30 +0200)]
Merge pull request #8137 from tamiko/update-copyright

Update copyright years.

5 years agoAdd another default method
Martin Kronbichler [Mon, 13 May 2019 14:10:22 +0000 (16:10 +0200)]
Add another default method

5 years agogcc9 warning: Provide copy constructor for class with operator=
Martin Kronbichler [Mon, 13 May 2019 13:50:40 +0000 (15:50 +0200)]
gcc9 warning: Provide copy constructor for class with operator=

5 years agoMerge pull request #8138 from tamiko/update_trilinos_version
David Wells [Mon, 13 May 2019 16:00:30 +0000 (12:00 -0400)]
Merge pull request #8138 from tamiko/update_trilinos_version

Update Trilinos version.

5 years agoDisable diagnostics pragma in a few boost and tbb headers 8139/head
Martin Kronbichler [Mon, 13 May 2019 15:54:10 +0000 (17:54 +0200)]
Disable diagnostics pragma in a few boost and tbb headers

5 years agocppcheck: avoid an unused variable 8141/head
Matthias Maier [Mon, 13 May 2019 15:45:33 +0000 (10:45 -0500)]
cppcheck: avoid an unused variable

5 years agoignore -Wdeprecated-copy in external headers
Matthias Maier [Mon, 13 May 2019 15:06:21 +0000 (10:06 -0500)]
ignore -Wdeprecated-copy in external headers

5 years agoUpdate Trilinos version. 8138/head
Matthias Maier [Mon, 13 May 2019 14:53:35 +0000 (09:53 -0500)]
Update Trilinos version.

5 years agoUpdate copyright years. 8137/head
Matthias Maier [Mon, 13 May 2019 14:49:18 +0000 (09:49 -0500)]
Update copyright years.

5 years agoDisable vectorization with CUDA 8128/head
Martin Kronbichler [Mon, 13 May 2019 13:21:55 +0000 (15:21 +0200)]
Disable vectorization with CUDA

5 years agoDisable vectorization if DEAL_II_VECTORIZATION_LEVEL=0
Martin Kronbichler [Mon, 13 May 2019 08:21:35 +0000 (10:21 +0200)]
Disable vectorization if DEAL_II_VECTORIZATION_LEVEL=0

5 years agoMerge pull request #8133 from bangerth/fix
Martin Kronbichler [Mon, 13 May 2019 09:26:37 +0000 (11:26 +0200)]
Merge pull request #8133 from bangerth/fix

Fix a couple of comments.

5 years agoFix a couple of comments. 8133/head
Wolfgang Bangerth [Mon, 13 May 2019 09:18:37 +0000 (03:18 -0600)]
Fix a couple of comments.

5 years agoMerge pull request #8130 from bangerth/fixup
Martin Kronbichler [Mon, 13 May 2019 09:00:38 +0000 (11:00 +0200)]
Merge pull request #8130 from bangerth/fixup

Fix the two comments from #8127.

5 years agoMerge pull request #8129 from bangerth/table
Martin Kronbichler [Mon, 13 May 2019 08:59:51 +0000 (10:59 +0200)]
Merge pull request #8129 from bangerth/table

Provide a much nicer way to format a table in step-56.

5 years agoFix the two comments from #8127. 8130/head
Wolfgang Bangerth [Mon, 13 May 2019 08:54:34 +0000 (02:54 -0600)]
Fix the two comments from #8127.

5 years agoProvide a much nicer way to format a table in step-56. 8129/head
Wolfgang Bangerth [Mon, 13 May 2019 08:50:57 +0000 (02:50 -0600)]
Provide a much nicer way to format a table in step-56.

5 years agoMerge pull request #8127 from tjhei/wrap_comment_warnings
Wolfgang Bangerth [Mon, 13 May 2019 08:47:07 +0000 (02:47 -0600)]
Merge pull request #8127 from tjhei/wrap_comment_warnings

release: wrap_comment warnings

5 years agoMerge pull request #8123 from drwells/improve-plural
Wolfgang Bangerth [Mon, 13 May 2019 08:43:47 +0000 (02:43 -0600)]
Merge pull request #8123 from drwells/improve-plural

Use 'Tensor objects' instead of 'Tensors'.

5 years agoMerge branch 'master' into wrap_comment_warnings 8127/head
Wolfgang Bangerth [Mon, 13 May 2019 08:41:54 +0000 (02:41 -0600)]
Merge branch 'master' into wrap_comment_warnings

5 years agoMerge pull request #8012 from Rombur/cuda_tutorial
Martin Kronbichler [Mon, 13 May 2019 08:26:10 +0000 (10:26 +0200)]
Merge pull request #8012 from Rombur/cuda_tutorial

Step-64 : matrix-free CUDA

5 years agoMerge pull request #8124 from masterleinad/fix_codespell_findings
Martin Kronbichler [Mon, 13 May 2019 05:48:18 +0000 (07:48 +0200)]
Merge pull request #8124 from masterleinad/fix_codespell_findings

Fix codespell findings

5 years agoa few more
Timo Heister [Mon, 13 May 2019 04:41:35 +0000 (22:41 -0600)]
a few more

5 years agorelease: wrap_comment warnings
Timo Heister [Mon, 13 May 2019 04:17:50 +0000 (22:17 -0600)]
release: wrap_comment warnings

Not all of them here might be crictical, but some are clearly bugs
(@name). In general, if @ref is not in a single line, doxygen sometimes
(not always) fails to create the correct link.
The line breaks in differentation/ are likely going to fix some of the
doxygen complaints about missing links.

5 years agoMerge pull request #8033 from jppelteret/sd-scalar_tensor_operations_01
Daniel Arndt [Mon, 13 May 2019 02:56:09 +0000 (22:56 -0400)]
Merge pull request #8033 from jppelteret/sd-scalar_tensor_operations_01

SD scalar and tensor operations: Substitution and evaluation

5 years agoFix codespell findings 8124/head
Daniel Arndt [Mon, 13 May 2019 01:50:27 +0000 (21:50 -0400)]
Fix codespell findings

5 years agoUse 'Tensor objects' instead of 'Tensors'. 8123/head
David Wells [Mon, 13 May 2019 00:55:18 +0000 (20:55 -0400)]
Use 'Tensor objects' instead of 'Tensors'.

This fixes doxygen links

5 years agoImprove documentation of SD tensor operations 8033/head
Jean-Paul Pelteret [Sun, 12 May 2019 23:51:09 +0000 (01:51 +0200)]
Improve documentation of SD tensor operations

Co-Authored-By: Daniel Arndt <arndtd@ornl.gov>
5 years agoImprove documentation of SD scalar operations
Jean-Paul Pelteret [Sun, 12 May 2019 23:44:18 +0000 (01:44 +0200)]
Improve documentation of SD scalar operations

Co-Authored-By: Daniel Arndt <arndtd@ornl.gov>
5 years agoMerge pull request #8121 from jppelteret/sd-doc_02
David Wells [Sun, 12 May 2019 23:37:51 +0000 (19:37 -0400)]
Merge pull request #8121 from jppelteret/sd-doc_02

Super small doc fixes for SD math functions

5 years agoTidy up some grammar used to describe SD math functions 8121/head
Jean-Paul Pelteret [Sun, 12 May 2019 23:28:22 +0000 (01:28 +0200)]
Tidy up some grammar used to describe SD math functions

5 years agoCorrect an incomplete latex command in math mode
Jean-Paul Pelteret [Sun, 12 May 2019 23:28:06 +0000 (01:28 +0200)]
Correct an incomplete latex command in math mode

5 years agoMerge pull request #8120 from jppelteret/sd-doc_01
Jean-Paul Pelteret [Sun, 12 May 2019 23:18:43 +0000 (01:18 +0200)]
Merge pull request #8120 from jppelteret/sd-doc_01

Add documentation module for symbolic differentiation

5 years agoFix some spelling errors in documentation of AD module 8120/head
Jean-Paul Pelteret [Sun, 12 May 2019 22:22:26 +0000 (00:22 +0200)]
Fix some spelling errors in documentation of AD module

5 years agoAdd documentation module for symbolic differentiation
Jean-Paul Pelteret [Fri, 10 May 2019 17:58:20 +0000 (19:58 +0200)]
Add documentation module for symbolic differentiation

5 years agoMerge pull request #8117 from drwells/fix-uninitialized-warning
David Wells [Sun, 12 May 2019 22:11:12 +0000 (18:11 -0400)]
Merge pull request #8117 from drwells/fix-uninitialized-warning

Fix a clang warning about an uninitialized read.

5 years agoMerge pull request #8115 from tjhei/doxygen_fixes3
Matthias Maier [Sun, 12 May 2019 21:49:36 +0000 (16:49 -0500)]
Merge pull request #8115 from tjhei/doxygen_fixes3

doxygen fixes

5 years agoMerge pull request #8116 from tjhei/doxygen_fixes4
Matthias Maier [Sun, 12 May 2019 21:46:20 +0000 (16:46 -0500)]
Merge pull request #8116 from tjhei/doxygen_fixes4

fix tables in tutorials

5 years agoMerge pull request #8119 from drwells/double-word-typos
Jean-Paul Pelteret [Sun, 12 May 2019 20:40:55 +0000 (22:40 +0200)]
Merge pull request #8119 from drwells/double-word-typos

Fix some double-word typos.

5 years agoFix some double-word typos. 8119/head
David Wells [Sun, 12 May 2019 19:53:16 +0000 (15:53 -0400)]
Fix some double-word typos.

e.g., "the the".

5 years agoRename some internal functions
Jean-Paul Pelteret [Sat, 11 May 2019 18:04:52 +0000 (20:04 +0200)]
Rename some internal functions


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