https://gitweb.dealii.org/ - dealii-svn.git/log

]> https://gitweb.dealii.org/ - dealii-svn.git/log

young [Tue, 6 Nov 2012 16:22:08 +0000 (16:22 +0000)]

Add missing vector_memory header (for PETSc).

git-svn-id: https://svn.dealii.org/trunk@27439 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 6 Nov 2012 15:56:36 +0000 (15:56 +0000)]

replace long deprecated downstream_dg

git-svn-id: https://svn.dealii.org/trunk@27437 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 6 Nov 2012 00:08:45 +0000 (00:08 +0000)]

assert valid enum state

git-svn-id: https://svn.dealii.org/trunk@27420 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Nov 2012 23:54:44 +0000 (23:54 +0000)]

fix test output

git-svn-id: https://svn.dealii.org/trunk@27417 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Nov 2012 23:53:42 +0000 (23:53 +0000)]

fix bug in new xfig output

git-svn-id: https://svn.dealii.org/trunk@27416 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 Nov 2012 19:31:52 +0000 (19:31 +0000)]

Several more.

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heister [Mon, 5 Nov 2012 17:13:26 +0000 (17:13 +0000)]

add an indent target using astyle, work in progress (taken from aspect)

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heister [Mon, 5 Nov 2012 16:57:52 +0000 (16:57 +0000)]

add a TODO

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heister [Mon, 5 Nov 2012 16:01:12 +0000 (16:01 +0000)]

fix test output

git-svn-id: https://svn.dealii.org/trunk@27402 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Nov 2012 15:39:00 +0000 (15:39 +0000)]

fix serialiation bug for dim=3

git-svn-id: https://svn.dealii.org/trunk@27399 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Nov 2012 15:38:23 +0000 (15:38 +0000)]

update tests to also check level_subdomain_id and update output

git-svn-id: https://svn.dealii.org/trunk@27398 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Nov 2012 15:23:48 +0000 (15:23 +0000)]

take over changed test output

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bangerth [Mon, 5 Nov 2012 00:58:13 +0000 (00:58 +0000)]

Typo fix.

git-svn-id: https://svn.dealii.org/trunk@27383 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 Nov 2012 00:57:22 +0000 (00:57 +0000)]

Mark input arguments as constant.

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bangerth [Mon, 5 Nov 2012 00:56:21 +0000 (00:56 +0000)]

Partial merge from the parallel_mg branch: Introduce a distribute_local_to_global function that writes a single element into a vector.

git-svn-id: https://svn.dealii.org/trunk@27381 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 Nov 2012 00:54:08 +0000 (00:54 +0000)]

Partial merge from parallel_mg branch: Trivial changes.

git-svn-id: https://svn.dealii.org/trunk@27380 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 Nov 2012 00:52:50 +0000 (00:52 +0000)]

Partial merge from the parallel_mg branch: Introduce Tvmult for Trilinos preconditioners.

git-svn-id: https://svn.dealii.org/trunk@27379 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 Nov 2012 00:44:55 +0000 (00:44 +0000)]

Partial merge from the parallel_mg branch: introduce Triangulation::n_global_levels() on the distributed triangulation.

git-svn-id: https://svn.dealii.org/trunk@27378 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 Nov 2012 00:38:43 +0000 (00:38 +0000)]

Partial merge from the parallel_mg branch: introduce level subdomain ids.

git-svn-id: https://svn.dealii.org/trunk@27377 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 Nov 2012 00:18:10 +0000 (00:18 +0000)]

Partial merge from the parallel_mg branch: Improve GridOut::write_xfig.

git-svn-id: https://svn.dealii.org/trunk@27375 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 Nov 2012 00:07:14 +0000 (00:07 +0000)]

Partial merge from the parallel_mg branch: Take over some foundational patches.

git-svn-id: https://svn.dealii.org/trunk@27374 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 4 Nov 2012 23:21:31 +0000 (23:21 +0000)]

Partial merge from the cmake branch: Remove old and likely unused compatibility code.

git-svn-id: https://svn.dealii.org/trunk@27369 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 4 Nov 2012 23:20:27 +0000 (23:20 +0000)]

Partial merge from the cmake branch: Remove compatibility code for old compilers.

git-svn-id: https://svn.dealii.org/trunk@27368 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 4 Nov 2012 23:15:05 +0000 (23:15 +0000)]

Partial merge from the cmake branch: Use the PETSc #define indicating whether we use real or complex numbers.

git-svn-id: https://svn.dealii.org/trunk@27367 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 4 Nov 2012 23:14:49 +0000 (23:14 +0000)]

Partial merge from the cmake branch: Use the PETSc #define indicating whether we use real or complex numbers.

git-svn-id: https://svn.dealii.org/trunk@27366 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 4 Nov 2012 23:10:23 +0000 (23:10 +0000)]

Partial merge from the cmake branch: Remove compatibility code for old compilers.

git-svn-id: https://svn.dealii.org/trunk@27364 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 4 Nov 2012 23:03:52 +0000 (23:03 +0000)]

Partial merge from the cmake branch: Remove old and likely unused compatibility code.

git-svn-id: https://svn.dealii.org/trunk@27363 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 4 Nov 2012 23:03:34 +0000 (23:03 +0000)]

Partial merge from the cmake branch: Remove old and likely unused compatibility code.

git-svn-id: https://svn.dealii.org/trunk@27362 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 4 Nov 2012 22:59:54 +0000 (22:59 +0000)]

Partial merge from the cmake branch: Remove old and likely unused compatibility code.

git-svn-id: https://svn.dealii.org/trunk@27360 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 4 Nov 2012 22:59:13 +0000 (22:59 +0000)]

Partial merge from the cmake branch: Remove old and likely unused compatibility code.

git-svn-id: https://svn.dealii.org/trunk@27359 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 4 Nov 2012 22:58:42 +0000 (22:58 +0000)]

Partial merge from the cmake branch: Avoid warnings about accesses past the end of an array with newer compilers.

git-svn-id: https://svn.dealii.org/trunk@27358 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 3 Nov 2012 03:58:21 +0000 (03:58 +0000)]

test for GrowingVectorMemory and PETSc

git-svn-id: https://svn.dealii.org/trunk@27332 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 3 Nov 2012 03:50:20 +0000 (03:50 +0000)]

fix typos

git-svn-id: https://svn.dealii.org/trunk@27331 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 3 Nov 2012 03:45:28 +0000 (03:45 +0000)]

destroy GrowingVectorMemory with PETSc objects at the end

git-svn-id: https://svn.dealii.org/trunk@27330 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 3 Nov 2012 03:27:29 +0000 (03:27 +0000)]

MPI_InitFinalize can now also initialize PETSc.

git-svn-id: https://svn.dealii.org/trunk@27328 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 3 Nov 2012 03:00:07 +0000 (03:00 +0000)]

format comments in step-6 using emacs so that they are not all over the place

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heister [Sat, 3 Nov 2012 02:51:05 +0000 (02:51 +0000)]

step-6 now uses ConstraintMatrix::distribute_local_to_global()

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bangerth [Fri, 2 Nov 2012 19:41:47 +0000 (19:41 +0000)]

Avoid a couple of warnings about past-the-end accesses.

git-svn-id: https://svn.dealii.org/trunk@27319 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 2 Nov 2012 18:59:48 +0000 (18:59 +0000)]

Correct an indexing mistake that would have bitten us in the
spacedim > dim case.

git-svn-id: https://svn.dealii.org/trunk@27318 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 2 Nov 2012 18:16:06 +0000 (18:16 +0000)]

Make compile.

git-svn-id: https://svn.dealii.org/trunk@27317 0785d39b-7218-0410-832d-ea1e28bc413d

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koecher [Fri, 2 Nov 2012 10:14:19 +0000 (10:14 +0000)]

corrected misspellings in trilions_precondition documentation

git-svn-id: https://svn.dealii.org/trunk@27311 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 1 Nov 2012 19:07:27 +0000 (19:07 +0000)]

fix output of test

git-svn-id: https://svn.dealii.org/trunk@27292 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 1 Nov 2012 19:06:34 +0000 (19:06 +0000)]

Fix an inconsistency where after calling DoFHandler::clear() it still reported n_dofs()>0 etc.

git-svn-id: https://svn.dealii.org/trunk@27291 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 1 Nov 2012 18:57:32 +0000 (18:57 +0000)]

add test showing bug in NumberCache after clear()

git-svn-id: https://svn.dealii.org/trunk@27290 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 1 Nov 2012 02:41:14 +0000 (02:41 +0000)]

Remove a workaround for --why?-- yet another old compiler problem.

git-svn-id: https://svn.dealii.org/trunk@27283 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 1 Nov 2012 02:39:13 +0000 (02:39 +0000)]

Remove a workaround for yet another old compiler problem.

git-svn-id: https://svn.dealii.org/trunk@27282 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 1 Nov 2012 02:37:36 +0000 (02:37 +0000)]

Remove a workaround for another old compiler problem.

git-svn-id: https://svn.dealii.org/trunk@27281 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 1 Nov 2012 02:36:22 +0000 (02:36 +0000)]

Remove a workaround for another old compiler problem.

git-svn-id: https://svn.dealii.org/trunk@27280 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 1 Nov 2012 02:34:27 +0000 (02:34 +0000)]

Remove a workaround for an old compiler problem.

git-svn-id: https://svn.dealii.org/trunk@27279 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 1 Nov 2012 02:32:09 +0000 (02:32 +0000)]

Remove some old workarounds from the time when we still compiled every file multiple times.

git-svn-id: https://svn.dealii.org/trunk@27278 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 1 Nov 2012 02:22:40 +0000 (02:22 +0000)]

Remove some piece of code that could only be enabled using a ./configure switch and that almost certainly hasn't been used in a very long time. Clean this up to make Matthias's life a bit simpler in the cmake conversion.

git-svn-id: https://svn.dealii.org/trunk@27277 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 1 Nov 2012 02:08:41 +0000 (02:08 +0000)]

Remove a #ifdef that was introduced in r20239 when we still had multiple libraries. The conditional was to work around a problem on Mac OS X where RTTI doesn't work across shared libraries. The code in question should work now without the workaround simply because at least in this part we no longer do RTTI across shared libs. The problem may still exist at the interface between the deal.II shared libs and user code.

git-svn-id: https://svn.dealii.org/trunk@27276 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 31 Oct 2012 11:57:32 +0000 (11:57 +0000)]

Indent HTML pages.

git-svn-id: https://svn.dealii.org/trunk@27253 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 31 Oct 2012 11:39:28 +0000 (11:39 +0000)]

Fix a bunch of typos and improve mark-up.

git-svn-id: https://svn.dealii.org/trunk@27252 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Tue, 30 Oct 2012 16:10:07 +0000 (16:10 +0000)]

set all contraints to zero for solve

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frohne [Tue, 30 Oct 2012 16:05:49 +0000 (16:05 +0000)]

plot for adaptive contact

git-svn-id: https://svn.dealii.org/trunk@27245 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Tue, 30 Oct 2012 16:05:01 +0000 (16:05 +0000)]

plot for strong scaling

git-svn-id: https://svn.dealii.org/trunk@27244 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 30 Oct 2012 15:30:21 +0000 (15:30 +0000)]

Undo r27234, 27235, 27237. It was a nice idea but it doesn't work.

git-svn-id: https://svn.dealii.org/trunk@27243 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 30 Oct 2012 13:50:38 +0000 (13:50 +0000)]

New test.

git-svn-id: https://svn.dealii.org/trunk@27238 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 30 Oct 2012 13:37:40 +0000 (13:37 +0000)]

Work around a problem introduced by adding the assertions a couple patches back.

git-svn-id: https://svn.dealii.org/trunk@27237 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 30 Oct 2012 13:32:41 +0000 (13:32 +0000)]

Fix a problem where DoFTools::make_flux_sparsity_pattern wasn't prepared to deal with adaptively refined meshes in 1d.

git-svn-id: https://svn.dealii.org/trunk@27236 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 30 Oct 2012 13:18:14 +0000 (13:18 +0000)]

Actually make it so that it compiles.

git-svn-id: https://svn.dealii.org/trunk@27235 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 30 Oct 2012 13:05:57 +0000 (13:05 +0000)]

Add a bunch of assertions to kill invalid behavior as early as possible (currently we get some really weird follow-up errors deep down in the machinery.

git-svn-id: https://svn.dealii.org/trunk@27234 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 27 Oct 2012 11:38:03 +0000 (11:38 +0000)]

Make work.

git-svn-id: https://svn.dealii.org/trunk@27227 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 27 Oct 2012 11:31:42 +0000 (11:31 +0000)]

New test.

git-svn-id: https://svn.dealii.org/trunk@27226 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 26 Oct 2012 21:47:09 +0000 (21:47 +0000)]

put link to benchmarks into documentation

git-svn-id: https://svn.dealii.org/trunk@27224 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 26 Oct 2012 21:10:21 +0000 (21:10 +0000)]

rename section

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heister [Fri, 26 Oct 2012 20:02:06 +0000 (20:02 +0000)]

update test (this test used to print nan/-nan on different compilers, now TimerOutput is fixed to just print 0.0)

git-svn-id: https://svn.dealii.org/trunk@27219 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 26 Oct 2012 20:01:22 +0000 (20:01 +0000)]

avoid printing NaN in TimerOutput.

git-svn-id: https://svn.dealii.org/trunk@27218 0785d39b-7218-0410-832d-ea1e28bc413d

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steigemann [Fri, 26 Oct 2012 16:12:04 +0000 (16:12 +0000)]

Interface to PETSc::PreconditionNone and ParaSails Preconditioner from the Hypre Suite

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steigemann [Fri, 26 Oct 2012 16:11:16 +0000 (16:11 +0000)]

Interface to PETSc::PreconditionNone and ParaSails Preconditioner from the Hypre Suite

git-svn-id: https://svn.dealii.org/trunk@27208 0785d39b-7218-0410-832d-ea1e28bc413d

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steigemann [Fri, 26 Oct 2012 16:10:53 +0000 (16:10 +0000)]

Interface to PETSc::PreconditionNone and ParaSails Preconditioner from the Hypre Suite

git-svn-id: https://svn.dealii.org/trunk@27207 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 26 Oct 2012 15:14:04 +0000 (15:14 +0000)]

remove warning

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kanschat [Fri, 26 Oct 2012 10:07:46 +0000 (10:07 +0000)]

add VectorInfo class

git-svn-id: https://svn.dealii.org/trunk@27202 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 25 Oct 2012 14:10:42 +0000 (14:10 +0000)]

Catch adding NaN into a Trilinos SparseMatrix in all cases (in debug mode).

git-svn-id: https://svn.dealii.org/trunk@27201 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 24 Oct 2012 16:53:30 +0000 (16:53 +0000)]

Fix a typo introduced with r27140

git-svn-id: https://svn.dealii.org/trunk@27196 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 24 Oct 2012 15:38:38 +0000 (15:38 +0000)]

Augment documentation.

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bangerth [Wed, 24 Oct 2012 02:44:37 +0000 (02:44 +0000)]

Enable symmetry mode and pick data from the PETSc environment.

git-svn-id: https://svn.dealii.org/trunk@27190 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 22 Oct 2012 21:31:01 +0000 (21:31 +0000)]

fix Trilinos tests for Trilinos 11.

git-svn-id: https://svn.dealii.org/trunk@27172 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 22 Oct 2012 21:30:26 +0000 (21:30 +0000)]

more fixes for Trilinos 11.

git-svn-id: https://svn.dealii.org/trunk@27171 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 22 Oct 2012 21:05:40 +0000 (21:05 +0000)]

fixes for trilinos 11. EPetra now supports long and int which causes ambiguous calls when using unsigned int.

git-svn-id: https://svn.dealii.org/trunk@27170 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 22 Oct 2012 15:42:38 +0000 (15:42 +0000)]

Re-word the supported platforms list. Update mailing list address.

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bangerth [Mon, 22 Oct 2012 15:41:15 +0000 (15:41 +0000)]

Re-word the supported platforms list. Update mailing list address.

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bangerth [Mon, 22 Oct 2012 15:32:06 +0000 (15:32 +0000)]

Remove a paragraph.

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bangerth [Sat, 20 Oct 2012 02:32:21 +0000 (02:32 +0000)]

Produce an error for an operation that doesn't make any sense in 1d.

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heister [Thu, 18 Oct 2012 16:17:11 +0000 (16:17 +0000)]

fix warning (thanks Uwe)

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bangerth [Wed, 17 Oct 2012 19:24:43 +0000 (19:24 +0000)]

Fix a misleading sentence in the documentation.

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bangerth [Wed, 17 Oct 2012 18:58:00 +0000 (18:58 +0000)]

Fix a misleading sentence in the documentation.

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young [Tue, 16 Oct 2012 11:48:47 +0000 (11:48 +0000)]

Update publication 2013.

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bangerth [Mon, 15 Oct 2012 19:47:48 +0000 (19:47 +0000)]

Add some to the documentation.

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bangerth [Mon, 15 Oct 2012 18:47:10 +0000 (18:47 +0000)]

Remove a couple of outdated comments.

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bangerth [Sun, 14 Oct 2012 22:36:51 +0000 (22:36 +0000)]

Take over 26990 from branch_cmake as well.

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bangerth [Sun, 14 Oct 2012 22:25:21 +0000 (22:25 +0000)]

Also check for sys/resource.h.

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bangerth [Sun, 14 Oct 2012 22:09:32 +0000 (22:09 +0000)]

Take over most of what's in patches r26981:26988 on branch_cmake.

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bangerth [Sun, 14 Oct 2012 21:59:54 +0000 (21:59 +0000)]

Check for availability of <sys/time.h>.

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bangerth [Sun, 14 Oct 2012 21:53:15 +0000 (21:53 +0000)]

Remove tests from configure.in that had previously been removed from aclocal.m4 and have since been giving us errors onto the console.

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bangerth [Sat, 13 Oct 2012 21:19:11 +0000 (21:19 +0000)]

Undo accidental merge of this file.

git-svn-id: https://svn.dealii.org/trunk@27111 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 13 Oct 2012 21:12:41 +0000 (21:12 +0000)]

Reintegrate branch_eliminate_iterator_functions.

git-svn-id: https://svn.dealii.org/trunk@27110 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 13 Oct 2012 12:39:13 +0000 (12:39 +0000)]

Fix typo.

git-svn-id: https://svn.dealii.org/trunk@27107 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 13 Oct 2012 12:24:37 +0000 (12:24 +0000)]

Remove references to merged branched from mainline.

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