]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
6 years agoMerge pull request #5538 from tjhei/trilinos_compress_check
Daniel Arndt [Mon, 27 Nov 2017 22:57:46 +0000 (23:57 +0100)]
Merge pull request #5538 from tjhei/trilinos_compress_check

check Trilinos compress() argument

6 years agoMerge pull request #5475 from bangerth/cuthill-mckk
Daniel Arndt [Mon, 27 Nov 2017 22:44:13 +0000 (23:44 +0100)]
Merge pull request #5475 from bangerth/cuthill-mckk

Generalize the numbering in the Cuthill-McKee algorithm.

6 years agoMerge pull request #5540 from bangerth/grammar
Timo Heister [Mon, 27 Nov 2017 20:38:29 +0000 (15:38 -0500)]
Merge pull request #5540 from bangerth/grammar

Change grammar of function documentation.

6 years agoChange grammar of function documentation. 5540/head
Wolfgang Bangerth [Mon, 27 Nov 2017 20:11:02 +0000 (13:11 -0700)]
Change grammar of function documentation.

6 years agoAdd another test. 5475/head
Wolfgang Bangerth [Thu, 16 Nov 2017 16:36:18 +0000 (09:36 -0700)]
Add another test.

6 years agoAdd changelog entry.
Wolfgang Bangerth [Thu, 16 Nov 2017 15:58:21 +0000 (08:58 -0700)]
Add changelog entry.

6 years agoAdd a test.
Wolfgang Bangerth [Thu, 16 Nov 2017 15:50:50 +0000 (08:50 -0700)]
Add a test.

6 years agoGeneralize the numbering in the Cuthill-McKee algorithm.
Wolfgang Bangerth [Thu, 9 Nov 2017 00:24:00 +0000 (17:24 -0700)]
Generalize the numbering in the Cuthill-McKee algorithm.

6 years agocheck Trilinos compress() argument 5538/head
Timo Heister [Mon, 27 Nov 2017 17:04:38 +0000 (12:04 -0500)]
check Trilinos compress() argument

6 years agoMerge pull request #5512 from GivAlz/Failing_find_active
Daniel Arndt [Mon, 27 Nov 2017 16:41:57 +0000 (17:41 +0100)]
Merge pull request #5512 from GivAlz/Failing_find_active

Fix: solving issues of find active cell around point(cache) with points at the edge

6 years agoMerge pull request #5537 from masterleinad/fix_wsign
Wolfgang Bangerth [Mon, 27 Nov 2017 13:29:27 +0000 (06:29 -0700)]
Merge pull request #5537 from masterleinad/fix_wsign

Fix Wsign-compare warning

6 years agoFix Wsign-compare warning 5537/head
Daniel Arndt [Mon, 27 Nov 2017 11:40:26 +0000 (12:40 +0100)]
Fix Wsign-compare warning

6 years agoMerge pull request #5535 from bangerth/grammar-issues
Martin Kronbichler [Mon, 27 Nov 2017 10:53:36 +0000 (11:53 +0100)]
Merge pull request #5535 from bangerth/grammar-issues

Use uniform grammar in function documentation.

6 years agoUse uniform grammar in function documentation. 5535/head
Wolfgang Bangerth [Mon, 27 Nov 2017 04:50:45 +0000 (21:50 -0700)]
Use uniform grammar in function documentation.

6 years agoMerge pull request #5514 from niveshd/zoltanPartition
Wolfgang Bangerth [Sun, 26 Nov 2017 23:19:33 +0000 (16:19 -0700)]
Merge pull request #5514 from niveshd/zoltanPartition

Mesh partitioning with zoltan instead of metis.

6 years agoMerge pull request #5528 from tamiko/generalized_interpolation_5
Wolfgang Bangerth [Sun, 26 Nov 2017 22:34:14 +0000 (15:34 -0700)]
Merge pull request #5528 from tamiko/generalized_interpolation_5

Allow non-interpolatory elements in FESystem for generalized supp.p.

6 years agoMerge pull request #5532 from masterleinad/fix_empty_lines
Wolfgang Bangerth [Sun, 26 Nov 2017 22:31:13 +0000 (15:31 -0700)]
Merge pull request #5532 from masterleinad/fix_empty_lines

Fix empty lines in subdomain_ids_parallel_08 output

6 years agoFix empty lines in subdomain_ids_parallel_08 output 5532/head
Daniel Arndt [Sun, 26 Nov 2017 22:16:43 +0000 (23:16 +0100)]
Fix empty lines in subdomain_ids_parallel_08 output

6 years agoadd changelog entry 5514/head
Nivesh Dommaraju [Sun, 26 Nov 2017 17:49:16 +0000 (11:49 -0600)]
add changelog entry

6 years agoadd zoltan tests
Nivesh Dommaraju [Sun, 26 Nov 2017 17:49:02 +0000 (11:49 -0600)]
add zoltan tests

6 years agoAdd support for Zoltan graph partitioner
Nivesh Dommaraju [Sun, 26 Nov 2017 17:47:53 +0000 (11:47 -0600)]
Add support for Zoltan graph partitioner

Zoltan is used for graph partitioning. The following page for zoltan's
guide has more information.
http://www.cs.sandia.gov/zoltan/ug_html/ug_alg_phg.html

Implementation:
 - 4 query functions, as need by zoltan, are added in sparsity_tools.cc
 - additional option has been added to "partition_triangulation"
   function to choose between "metis" or "zoltan"

6 years agoCMake: Add check for Zoltan to trilinos configuration
Nivesh Dommaraju [Sun, 26 Nov 2017 17:45:11 +0000 (11:45 -0600)]
CMake: Add check for Zoltan to trilinos configuration

6 years agoupdate documentation 5528/head
Matthias Maier [Sat, 25 Nov 2017 18:39:21 +0000 (12:39 -0600)]
update documentation

6 years agoupdate test output
Matthias Maier [Fri, 24 Nov 2017 17:36:59 +0000 (11:36 -0600)]
update test output

6 years agoadd a new assert checking for non-interpolatory base elements
Matthias Maier [Fri, 24 Nov 2017 17:27:47 +0000 (11:27 -0600)]
add a new assert checking for non-interpolatory base elements

6 years agoremove duplicate asserts
Matthias Maier [Fri, 24 Nov 2017 16:41:23 +0000 (10:41 -0600)]
remove duplicate asserts

6 years agoBugfix: Allow non-interpolatory elements in FESystem for generalized s.p.
Matthias Maier [Fri, 24 Nov 2017 16:26:07 +0000 (10:26 -0600)]
Bugfix: Allow non-interpolatory elements in FESystem for generalized s.p.

In case we encounter a non-interpolatory base element we now simply fill
the corresponding degrees of freedom with NaNs.

6 years agoAdded tolerance and test for GridTools::find_active_cell_around_point and test 5512/head
Giovanni Alzetta [Tue, 21 Nov 2017 14:56:57 +0000 (15:56 +0100)]
Added tolerance and test for GridTools::find_active_cell_around_point and test

6 years agoMerge pull request #5526 from GivAlz/new_bbox_serialization
Wolfgang Bangerth [Sat, 25 Nov 2017 04:57:04 +0000 (21:57 -0700)]
Merge pull request #5526 from GivAlz/new_bbox_serialization

Adding serialize function to boundingbox class

6 years agoAdding serialize function to boundingbox class and test 5526/head
Giovanni Alzetta [Fri, 24 Nov 2017 11:27:14 +0000 (12:27 +0100)]
Adding serialize function to boundingbox class and test

6 years agoRevert "Reinsert old function"
Matthias Maier [Fri, 24 Nov 2017 15:47:57 +0000 (09:47 -0600)]
Revert "Reinsert old function"

This reverts commit 711c6ea696376a5e5726cda0b31efe1a37b4e742.

6 years agoMerge pull request #5522 from masterleinad/fix_undefined_references_ad_intel
Jean-Paul Pelteret [Fri, 24 Nov 2017 13:04:58 +0000 (14:04 +0100)]
Merge pull request #5522 from masterleinad/fix_undefined_references_ad_intel

Avoid undefined references in AD::NumberTraits

6 years agoMerge pull request #5527 from masterleinad/fix_mpi_some_to_some_02
Luca Heltai [Fri, 24 Nov 2017 11:51:26 +0000 (12:51 +0100)]
Merge pull request #5527 from masterleinad/fix_mpi_some_to_some_02

Fix base/mpi_some_to_some_02

6 years agoFix mpi_some_to_some_02 5527/head
Daniel Arndt [Fri, 24 Nov 2017 11:36:20 +0000 (12:36 +0100)]
Fix mpi_some_to_some_02

6 years agoMerge pull request #5521 from masterleinad/restrict_metis_test
Daniel Arndt [Fri, 24 Nov 2017 10:35:54 +0000 (11:35 +0100)]
Merge pull request #5521 from masterleinad/restrict_metis_test

Change partitioner for mpi/subdomain_ids_parallel_08

6 years agoUse different partitioner in mpi/mpi/subdomain_ids_parallel_08 5521/head
Daniel Arndt [Thu, 23 Nov 2017 14:18:54 +0000 (15:18 +0100)]
Use different partitioner in mpi/mpi/subdomain_ids_parallel_08

6 years agoMerge pull request #5491 from bangerth/complex-test
Jean-Paul Pelteret [Fri, 24 Nov 2017 06:59:39 +0000 (07:59 +0100)]
Merge pull request #5491 from bangerth/complex-test

Change the boundary value type to match the vector type.

6 years agoMerge pull request #5524 from masterleinad/fix_communicate_active_fe_indices
Denis Davydov [Fri, 24 Nov 2017 06:02:57 +0000 (07:02 +0100)]
Merge pull request #5524 from masterleinad/fix_communicate_active_fe_indices

Fix communicate_active_fe_indices again

6 years agoAdd changelog. 5491/head
Wolfgang Bangerth [Fri, 17 Nov 2017 16:46:39 +0000 (09:46 -0700)]
Add changelog.

6 years agoFix communicate_active_vertice_fe_indices again 5524/head
Daniel Arndt [Thu, 23 Nov 2017 21:49:03 +0000 (22:49 +0100)]
Fix communicate_active_vertice_fe_indices again

6 years agoMerge pull request #5520 from bangerth/changelogs
Luca Heltai [Thu, 23 Nov 2017 16:25:26 +0000 (17:25 +0100)]
Merge pull request #5520 from bangerth/changelogs

Make changelogs look more uniform.

6 years agoMerge pull request #5519 from bangerth/doc-update
Luca Heltai [Thu, 23 Nov 2017 16:25:15 +0000 (17:25 +0100)]
Merge pull request #5519 from bangerth/doc-update

Minor doc updates.

6 years agoMinor doc updates. 5519/head
Wolfgang Bangerth [Thu, 23 Nov 2017 14:08:39 +0000 (07:08 -0700)]
Minor doc updates.

6 years agoMake changelogs look more uniform. 5520/head
Wolfgang Bangerth [Thu, 23 Nov 2017 13:59:33 +0000 (06:59 -0700)]
Make changelogs look more uniform.

6 years agoAvoid undefined references in AD::NumberTraits 5522/head
Daniel Arndt [Thu, 23 Nov 2017 14:35:06 +0000 (15:35 +0100)]
Avoid undefined references in AD::NumberTraits

6 years agoMerge pull request #5511 from masterleinad/restrict_arpack_tests
Luca Heltai [Thu, 23 Nov 2017 13:01:03 +0000 (14:01 +0100)]
Merge pull request #5511 from masterleinad/restrict_arpack_tests

Restrict ARPACK tests to UMFPACK support

6 years agoMerge pull request #5509 from luca-heltai/test-utilities
Luca Heltai [Thu, 23 Nov 2017 12:59:17 +0000 (13:59 +0100)]
Merge pull request #5509 from luca-heltai/test-utilities

Added random_value and random_point to tests.h

6 years agoBe more pedantic with static_cast (now works also for std::complex). 5509/head
Luca Heltai [Thu, 23 Nov 2017 08:01:16 +0000 (09:01 +0100)]
Be more pedantic with static_cast (now works also for std::complex).

6 years agoMerge pull request #5518 from masterleinad/fix_communicate_active_fe_indices
Denis Davydov [Wed, 22 Nov 2017 22:11:05 +0000 (23:11 +0100)]
Merge pull request #5518 from masterleinad/fix_communicate_active_fe_indices

Fix sharedtria/communicate_active_fe_indices

6 years agoMerge pull request #5508 from jppelteret/ad-update_run_testsuite
Denis Davydov [Wed, 22 Nov 2017 22:09:17 +0000 (23:09 +0100)]
Merge pull request #5508 from jppelteret/ad-update_run_testsuite

Update script that runs the testsuite

6 years agoMerge pull request #5516 from tjhei/tests_avoid_metis
Timo Heister [Wed, 22 Nov 2017 16:56:56 +0000 (11:56 -0500)]
Merge pull request #5516 from tjhei/tests_avoid_metis

Tests: avoid using metis in tests using shared tria

6 years agoTests: avoid using metis in tests using shared tria 5516/head
Timo Heister [Wed, 22 Nov 2017 19:22:30 +0000 (14:22 -0500)]
Tests: avoid using metis in tests using shared tria

This is because maintenance of 4 output files is a nightmare

6 years agoFix sharedtria/communicate_active_fe_indices 5518/head
Daniel Arndt [Wed, 22 Nov 2017 15:37:46 +0000 (16:37 +0100)]
Fix sharedtria/communicate_active_fe_indices

6 years agoFixed Denis' comments.
Luca Heltai [Wed, 22 Nov 2017 15:40:29 +0000 (16:40 +0100)]
Fixed Denis' comments.

6 years agoAdded random_value and random_point to tests.h
Luca Heltai [Tue, 21 Nov 2017 11:34:55 +0000 (12:34 +0100)]
Added random_value and random_point to tests.h

6 years agoMerge pull request #5517 from jppelteret/ad-doxygen_settings
Denis Davydov [Wed, 22 Nov 2017 14:47:39 +0000 (15:47 +0100)]
Merge pull request #5517 from jppelteret/ad-doxygen_settings

Update doxygen options to include Adol-C

6 years agoUpdate doxygen options to include Adol-C 5517/head
Jean-Paul Pelteret [Wed, 22 Nov 2017 14:34:08 +0000 (15:34 +0100)]
Update doxygen options to include Adol-C

6 years agoMerge pull request #5501 from masterleinad/bump_trilinos_version
Jean-Paul Pelteret [Wed, 22 Nov 2017 13:12:45 +0000 (14:12 +0100)]
Merge pull request #5501 from masterleinad/bump_trilinos_version

Bump required Trilinos version to 12.4.2

6 years agoBump required Trilinos version to 12.4 5501/head
Daniel Arndt [Sat, 18 Nov 2017 13:02:42 +0000 (14:02 +0100)]
Bump required Trilinos version to 12.4

6 years agoRestrict ARPACK tests to UMFPACK support 5511/head
Daniel Arndt [Tue, 21 Nov 2017 13:41:52 +0000 (14:41 +0100)]
Restrict ARPACK tests to UMFPACK support

6 years agoMerge pull request #5458 from GivAlz/new_guess_bbox
Luca Heltai [Tue, 21 Nov 2017 08:22:35 +0000 (09:22 +0100)]
Merge pull request #5458 from GivAlz/new_guess_bbox

Added GridTools::guess_point_owner and test

6 years agoUpdate script that runs the testsuite 5508/head
Jean-Paul Pelteret [Tue, 21 Nov 2017 06:02:03 +0000 (07:02 +0100)]
Update script that runs the testsuite

6 years agoMerge pull request #5482 from jppelteret/ad-sacado_product_type
Jean-Paul Pelteret [Tue, 21 Nov 2017 05:57:48 +0000 (06:57 +0100)]
Merge pull request #5482 from jppelteret/ad-sacado_product_type

 Remove redundant specializations of scalar_product for Sacado numbers

6 years agoMerge pull request #5436 from tcclevenger/distribute_dofs_shared
Timo Heister [Mon, 20 Nov 2017 19:55:13 +0000 (14:55 -0500)]
Merge pull request #5436 from tcclevenger/distribute_dofs_shared

Change sharedtria dof distribution to match distributed tria

6 years agoMerge pull request #5502 from luca-heltai/some-to-some-all-gather
Daniel Arndt [Mon, 20 Nov 2017 17:45:28 +0000 (18:45 +0100)]
Merge pull request #5502 from luca-heltai/some-to-some-all-gather

New some_to_some and all_gather functions.

6 years agoMerge pull request #5507 from kronbichler/fix_spherical_manifold_intermediate
Daniel Arndt [Mon, 20 Nov 2017 17:25:28 +0000 (18:25 +0100)]
Merge pull request #5507 from kronbichler/fix_spherical_manifold_intermediate

Fix get_intermediate_point in spherical manifold for particular point

6 years agoAdded GridTools::guess_point_owner and test 5458/head
Giovanni Alzetta [Mon, 13 Nov 2017 12:26:00 +0000 (12:26 +0000)]
Added GridTools::guess_point_owner and test

6 years agoMerge pull request #5493 from gassmoeller/fix_particle_handler_bug
Daniel Arndt [Mon, 20 Nov 2017 15:44:29 +0000 (16:44 +0100)]
Merge pull request #5493 from gassmoeller/fix_particle_handler_bug

Fix ghost particle bug

6 years agoRemoved one output that requires MPILogInitAll in serial. 5502/head
Luca Heltai [Mon, 20 Nov 2017 15:10:31 +0000 (16:10 +0100)]
Removed one output that requires MPILogInitAll in serial.

6 years agoMerge pull request #5468 from GivAlz/improve_computeptloc
Luca Heltai [Mon, 20 Nov 2017 13:53:00 +0000 (14:53 +0100)]
Merge pull request #5468 from GivAlz/improve_computeptloc

Improving and fixing GridTools::compute_point_locations

6 years agoAdded tests for serial, and one more complex test.
Luca Heltai [Mon, 20 Nov 2017 13:36:40 +0000 (14:36 +0100)]
Added tests for serial, and one more complex test.

6 years agoAdd test. 5507/head
Martin Kronbichler [Mon, 20 Nov 2017 12:08:58 +0000 (13:08 +0100)]
Add test.

6 years agoFix SphericalManifold::get_intermediate_point for particular point combination.
Martin Kronbichler [Mon, 20 Nov 2017 11:59:45 +0000 (12:59 +0100)]
Fix SphericalManifold::get_intermediate_point for particular point combination.

6 years agoMerge pull request #5503 from cpraveen/convert-support-dof
Daniel Arndt [Mon, 20 Nov 2017 11:10:26 +0000 (12:10 +0100)]
Merge pull request #5503 from cpraveen/convert-support-dof

Add convert_generalized_support_point_values_to_dof_values in FE_FaceQ and FE_TraceQ

6 years agoFixed serial case.
Luca Heltai [Mon, 20 Nov 2017 09:37:30 +0000 (10:37 +0100)]
Fixed serial case.

6 years agoAddressed Denis' comments.
Luca Heltai [Sun, 19 Nov 2017 23:14:15 +0000 (00:14 +0100)]
Addressed Denis' comments.

6 years agoMerge pull request #5504 from kronbichler/fix_convergence_table
Daniel Arndt [Sun, 19 Nov 2017 20:23:36 +0000 (21:23 +0100)]
Merge pull request #5504 from kronbichler/fix_convergence_table

Fix convergence rates with 64 bit integer key column

6 years agoChangelog. 5504/head
Martin Kronbichler [Sun, 19 Nov 2017 14:55:11 +0000 (15:55 +0100)]
Changelog.

6 years agoAdd test.
Martin Kronbichler [Sun, 19 Nov 2017 14:54:59 +0000 (15:54 +0100)]
Add test.

6 years agoFix TableEntry for unsigned long long int.
Martin Kronbichler [Sun, 19 Nov 2017 14:54:26 +0000 (15:54 +0100)]
Fix TableEntry for unsigned long long int.

6 years agoRenamed tests to be more descriptive.
Luca Heltai [Sun, 19 Nov 2017 11:25:50 +0000 (12:25 +0100)]
Renamed tests to be more descriptive.

6 years agosome_to_some and all_gather.
Luca Heltai [Sat, 18 Nov 2017 20:49:54 +0000 (21:49 +0100)]
some_to_some and all_gather.

6 years agoAdd entry in news 5503/head
Praveen C [Sun, 19 Nov 2017 09:35:19 +0000 (15:05 +0530)]
Add entry in news

6 years agoIndent using astyle 2.04
Praveen C [Sun, 19 Nov 2017 05:45:50 +0000 (11:15 +0530)]
Indent using astyle 2.04

6 years agoFix indentation
Praveen C [Sun, 19 Nov 2017 05:01:00 +0000 (10:31 +0530)]
Fix indentation

6 years agoMerge pull request #5500 from luca-heltai/pack_unpack
Daniel Arndt [Sun, 19 Nov 2017 04:54:22 +0000 (05:54 +0100)]
Merge pull request #5500 from luca-heltai/pack_unpack

Utilities::pack and unpack

6 years agoFix comment
Praveen C [Sun, 19 Nov 2017 04:51:28 +0000 (10:21 +0530)]
Fix comment

6 years agoAdd convert_generalized_support_point_values_to_dof_values
Praveen C [Sun, 19 Nov 2017 04:44:46 +0000 (10:14 +0530)]
Add convert_generalized_support_point_values_to_dof_values

This function is missing for FE_FaceQ and FE_TraceQ which is now
implemented by copying from FE_DGQ.

See https://github.com/dealii/dealii/issues/5449

6 years agoAdded support for tuple serialization in Utilities. 5500/head
Luca Heltai [Sat, 18 Nov 2017 19:18:27 +0000 (20:18 +0100)]
Added support for tuple serialization in Utilities.

6 years agoAdded pack/unpack to Utilities.
Luca Heltai [Sat, 18 Nov 2017 19:18:09 +0000 (20:18 +0100)]
Added pack/unpack to Utilities.

6 years agoMerge pull request #5489 from o-sutton/fix_adaptation_bad_access
Daniel Arndt [Sat, 18 Nov 2017 10:44:56 +0000 (11:44 +0100)]
Merge pull request #5489 from o-sutton/fix_adaptation_bad_access

Fix EXC_BAD_ACCESS occurring when marking all elements for refinement or coarsening

6 years agoMerge pull request #5495 from masterleinad/remove_unused_typedefs
Jean-Paul Pelteret [Fri, 17 Nov 2017 19:50:36 +0000 (20:50 +0100)]
Merge pull request #5495 from masterleinad/remove_unused_typedefs

Remove unused typedefs

6 years agoRemove unused typedefs 5495/head
Daniel Arndt [Fri, 17 Nov 2017 11:29:57 +0000 (12:29 +0100)]
Remove unused typedefs

6 years agoFix ghost particle bug 5493/head
Rene Gassmoeller [Fri, 17 Nov 2017 17:24:54 +0000 (10:24 -0700)]
Fix ghost particle bug

6 years agoAdd a test to ensure that refine_and_coarsen_fixed_number behaves as expected when... 5489/head
Oliver Sutton [Fri, 17 Nov 2017 17:02:19 +0000 (17:02 +0000)]
Add a test to ensure that refine_and_coarsen_fixed_number behaves as expected when either top_fraction or bottom_fraction are set to 1.0.

6 years agoAdd test.
Wolfgang Bangerth [Fri, 17 Nov 2017 16:43:17 +0000 (09:43 -0700)]
Add test.

6 years agoChange the boundary value type to match the vector type.
Wolfgang Bangerth [Fri, 17 Nov 2017 16:42:59 +0000 (09:42 -0700)]
Change the boundary value type to match the vector type.

6 years agoMerge pull request #5488 from masterleinad/avoid_scoped_lock_warning
Daniel Arndt [Fri, 17 Nov 2017 16:20:06 +0000 (17:20 +0100)]
Merge pull request #5488 from masterleinad/avoid_scoped_lock_warning

Avoid warning about unused ScopedLock for DEAL_II_WITH_THREADS=OFF

6 years agoAdd to minor news
Oliver Sutton [Fri, 17 Nov 2017 15:52:24 +0000 (15:52 +0000)]
Add to minor news

6 years agoUpdate grid_refinement.cc
o-sutton [Fri, 17 Nov 2017 15:39:46 +0000 (15:39 +0000)]
Update grid_refinement.cc

Fix indentation


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