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15 years agoRestructure the TrilinosTools a bit: Call it System::MPI_InitFinalize because that...
Wolfgang Bangerth [Wed, 29 Oct 2008 13:51:18 +0000 (13:51 +0000)]
Restructure the TrilinosTools a bit: Call it System::MPI_InitFinalize because that's what it does, after all. Take all functions that don't really rely on the state of this object out and make them global functions.

git-svn-id: https://svn.dealii.org/trunk@17395 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoAdd comment.
Wolfgang Bangerth [Wed, 29 Oct 2008 12:18:40 +0000 (12:18 +0000)]
Add comment.

git-svn-id: https://svn.dealii.org/trunk@17394 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoChanged some comment when interpolating the Stokes solution, since we need it for...
Martin Kronbichler [Wed, 29 Oct 2008 08:47:11 +0000 (08:47 +0000)]
Changed some comment when interpolating the Stokes solution, since we need it for the extrapolation in the temperature equation.

git-svn-id: https://svn.dealii.org/trunk@17392 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoPatch by Christian Cornelssen: Make links relative to allow moving install directories.
Wolfgang Bangerth [Wed, 29 Oct 2008 02:26:12 +0000 (02:26 +0000)]
Patch by Christian Cornelssen: Make links relative to allow moving install directories.

git-svn-id: https://svn.dealii.org/trunk@17391 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoSimplify things a bit: let all DataOut* classes use the same internal data structure...
Wolfgang Bangerth [Wed, 29 Oct 2008 02:20:03 +0000 (02:20 +0000)]
Simplify things a bit: let all DataOut* classes use the same internal data structure for parallelization.

git-svn-id: https://svn.dealii.org/trunk@17390 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoRegenerate
Wolfgang Bangerth [Wed, 29 Oct 2008 00:09:38 +0000 (00:09 +0000)]
Regenerate

git-svn-id: https://svn.dealii.org/trunk@17387 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoReindent.
Wolfgang Bangerth [Wed, 29 Oct 2008 00:09:30 +0000 (00:09 +0000)]
Reindent.

git-svn-id: https://svn.dealii.org/trunk@17386 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoSpecify a few template arguments explicitly to help IBM's xlC.
Wolfgang Bangerth [Wed, 29 Oct 2008 00:00:24 +0000 (00:00 +0000)]
Specify a few template arguments explicitly to help IBM's xlC.

git-svn-id: https://svn.dealii.org/trunk@17385 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoMake things work with xlC
Wolfgang Bangerth [Tue, 28 Oct 2008 23:42:15 +0000 (23:42 +0000)]
Make things work with xlC

git-svn-id: https://svn.dealii.org/trunk@17384 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoIBM's xlC is unhappy if we do -DBOOST_NO_SLIST on the command line and later do ...
Wolfgang Bangerth [Tue, 28 Oct 2008 23:24:24 +0000 (23:24 +0000)]
IBM's xlC is unhappy if we do -DBOOST_NO_SLIST on the command line and later do #define BOOST_NO_SLIST, claiming that the two have differing definitions. I assume that means that the former is equivalent to -DBOOST_NO_SLIST=1 whereas the latter sets it to ''. I'm relatively unsure about this, however. That said, the problem is easily solved by simply not redefining the symbol if it is already defined.

git-svn-id: https://svn.dealii.org/trunk@17383 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoCan run on AIX using gcc4.3
Wolfgang Bangerth [Tue, 28 Oct 2008 22:23:35 +0000 (22:23 +0000)]
Can run on AIX using gcc4.3

git-svn-id: https://svn.dealii.org/trunk@17382 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoAdd newline to end of file. Apparently this confuses sed on AIX...
Wolfgang Bangerth [Tue, 28 Oct 2008 22:01:44 +0000 (22:01 +0000)]
Add newline to end of file. Apparently this confuses sed on AIX...

git-svn-id: https://svn.dealii.org/trunk@17381 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoDo resize left hand side operand in BlockVector::operator=(BlockVector).
Wolfgang Bangerth [Tue, 28 Oct 2008 21:56:12 +0000 (21:56 +0000)]
Do resize left hand side operand in BlockVector::operator=(BlockVector).

git-svn-id: https://svn.dealii.org/trunk@17380 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoMore comments.
Wolfgang Bangerth [Tue, 28 Oct 2008 19:52:12 +0000 (19:52 +0000)]
More comments.

git-svn-id: https://svn.dealii.org/trunk@17378 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoTake over some changes from step-31.
Wolfgang Bangerth [Tue, 28 Oct 2008 19:46:24 +0000 (19:46 +0000)]
Take over some changes from step-31.

git-svn-id: https://svn.dealii.org/trunk@17377 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoWrite time step in a more standard format.
Wolfgang Bangerth [Tue, 28 Oct 2008 19:27:34 +0000 (19:27 +0000)]
Write time step in a more standard format.

git-svn-id: https://svn.dealii.org/trunk@17376 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoFix up a number of other issues and finish reading through the document.
Wolfgang Bangerth [Tue, 28 Oct 2008 19:26:58 +0000 (19:26 +0000)]
Fix up a number of other issues and finish reading through the document.

git-svn-id: https://svn.dealii.org/trunk@17375 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoComment the output strategy when using the new time stepping.
Martin Kronbichler [Tue, 28 Oct 2008 14:33:16 +0000 (14:33 +0000)]
Comment the output strategy when using the new time stepping.

git-svn-id: https://svn.dealii.org/trunk@17368 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoOnly create the memory leak when linking with Trilinos.
Wolfgang Bangerth [Tue, 28 Oct 2008 14:05:23 +0000 (14:05 +0000)]
Only create the memory leak when linking with Trilinos.

git-svn-id: https://svn.dealii.org/trunk@17365 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoNow the Stokes solution is computed at the old time level with the old temperature...
Martin Kronbichler [Tue, 28 Oct 2008 12:17:56 +0000 (12:17 +0000)]
Now the Stokes solution is computed at the old time level with the old temperature, instead of the new one. This makes the discretization O(h^2) again.

git-svn-id: https://svn.dealii.org/trunk@17359 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoUpdate test results after the change to the .cc file.
Wolfgang Bangerth [Mon, 27 Oct 2008 22:13:02 +0000 (22:13 +0000)]
Update test results after the change to the .cc file.

git-svn-id: https://svn.dealii.org/trunk@17356 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoUpdate after the fix to GridOut in 17156.
Wolfgang Bangerth [Mon, 27 Oct 2008 22:10:48 +0000 (22:10 +0000)]
Update after the fix to GridOut in 17156.

git-svn-id: https://svn.dealii.org/trunk@17355 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoEncode in the finite element name which quadrature formula was used.
Wolfgang Bangerth [Mon, 27 Oct 2008 22:08:44 +0000 (22:08 +0000)]
Encode in the finite element name which quadrature formula was used.

git-svn-id: https://svn.dealii.org/trunk@17354 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoupdate
Wolfgang Bangerth [Mon, 27 Oct 2008 21:51:52 +0000 (21:51 +0000)]
update

git-svn-id: https://svn.dealii.org/trunk@17353 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoupdate
Wolfgang Bangerth [Mon, 27 Oct 2008 21:50:26 +0000 (21:50 +0000)]
update

git-svn-id: https://svn.dealii.org/trunk@17352 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoAdded MatrixTools::apply_boundary_values for PETScWrappers::MPI::BlockSparseMatrix...
Timo Heister [Mon, 27 Oct 2008 15:39:00 +0000 (15:39 +0000)]
Added MatrixTools::apply_boundary_values for PETScWrappers::MPI::BlockSparseMatrix and added CompressedSimpleSparsityPattern in doc/news/changes.

git-svn-id: https://svn.dealii.org/trunk@17351 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoFurther cleanups and documentation work.
Wolfgang Bangerth [Mon, 27 Oct 2008 14:57:31 +0000 (14:57 +0000)]
Further cleanups and documentation work.

git-svn-id: https://svn.dealii.org/trunk@17350 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoSlight changes in comments.
Martin Kronbichler [Mon, 27 Oct 2008 13:32:22 +0000 (13:32 +0000)]
Slight changes in comments.

git-svn-id: https://svn.dealii.org/trunk@17349 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoMore docs.
Wolfgang Bangerth [Mon, 27 Oct 2008 03:51:38 +0000 (03:51 +0000)]
More docs.

git-svn-id: https://svn.dealii.org/trunk@17348 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoUpdate after fix to GridOut in 17155.
Wolfgang Bangerth [Mon, 27 Oct 2008 03:48:56 +0000 (03:48 +0000)]
Update after fix to GridOut in 17155.

git-svn-id: https://svn.dealii.org/trunk@17347 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoUpdate after the changes to the Triangulation class in 17114.
Wolfgang Bangerth [Mon, 27 Oct 2008 03:27:02 +0000 (03:27 +0000)]
Update after the changes to the Triangulation class in 17114.

git-svn-id: https://svn.dealii.org/trunk@17346 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoComment on two more functions. Change choice of quadrature points both in step-31...
Wolfgang Bangerth [Mon, 27 Oct 2008 03:17:16 +0000 (03:17 +0000)]
Comment on two more functions. Change choice of quadrature points both in step-31 and -32.

git-svn-id: https://svn.dealii.org/trunk@17345 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoNew results after the change 17156 for the gnuplot output of GridOut.
Wolfgang Bangerth [Mon, 27 Oct 2008 01:34:29 +0000 (01:34 +0000)]
New results after the change 17156 for the gnuplot output of GridOut.

git-svn-id: https://svn.dealii.org/trunk@17344 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoPatch by Christian Cornelssen: If on .so systems, use the form libxx.so.6.2.1 fo...
Wolfgang Bangerth [Sun, 26 Oct 2008 23:49:08 +0000 (23:49 +0000)]
Patch by Christian Cornelssen: If on .so systems, use the form libxx.so.6.2.1 fo shared libraries. Otherwise use libxx.6.2.1.so.

git-svn-id: https://svn.dealii.org/trunk@17343 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoPatch by Christian Cornelssen: Fix an obvious misspelling.
Wolfgang Bangerth [Sun, 26 Oct 2008 23:47:55 +0000 (23:47 +0000)]
Patch by Christian Cornelssen: Fix an obvious misspelling.

git-svn-id: https://svn.dealii.org/trunk@17342 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoReindent.
Wolfgang Bangerth [Sat, 25 Oct 2008 03:58:35 +0000 (03:58 +0000)]
Reindent.

git-svn-id: https://svn.dealii.org/trunk@17339 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoFix one bug (weighting the Schur complement) and add to the documentation.
Wolfgang Bangerth [Sat, 25 Oct 2008 03:57:29 +0000 (03:57 +0000)]
Fix one bug (weighting the Schur complement) and add to the documentation.

git-svn-id: https://svn.dealii.org/trunk@17338 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoSome small updates.
Martin Kronbichler [Fri, 24 Oct 2008 16:21:47 +0000 (16:21 +0000)]
Some small updates.

git-svn-id: https://svn.dealii.org/trunk@17337 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoUpdated some comments, removed some unnecessary code.
Martin Kronbichler [Fri, 24 Oct 2008 14:21:13 +0000 (14:21 +0000)]
Updated some comments, removed some unnecessary code.

git-svn-id: https://svn.dealii.org/trunk@17335 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoCorrected one error.
Martin Kronbichler [Fri, 24 Oct 2008 11:15:37 +0000 (11:15 +0000)]
Corrected one error.

git-svn-id: https://svn.dealii.org/trunk@17333 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoWrote a TrilinosTools class that makes the use of Trilinos a bit easier.
Martin Kronbichler [Fri, 24 Oct 2008 10:36:50 +0000 (10:36 +0000)]
Wrote a TrilinosTools class that makes the use of Trilinos a bit easier.

git-svn-id: https://svn.dealii.org/trunk@17332 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoRemoved some nonsens.
Martin Kronbichler [Fri, 24 Oct 2008 09:43:58 +0000 (09:43 +0000)]
Removed some nonsens.

git-svn-id: https://svn.dealii.org/trunk@17331 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoGenerate template instantiations for all currently available vectors.
Wolfgang Bangerth [Thu, 23 Oct 2008 20:10:09 +0000 (20:10 +0000)]
Generate template instantiations for all currently available vectors.

git-svn-id: https://svn.dealii.org/trunk@17330 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoDon't forget to also multiply the preconditioner term with eta.
Wolfgang Bangerth [Thu, 23 Oct 2008 18:37:54 +0000 (18:37 +0000)]
Don't forget to also multiply the preconditioner term with eta.

git-svn-id: https://svn.dealii.org/trunk@17326 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoNow step-31 is fully commented. However, one should look them through once again...
Martin Kronbichler [Thu, 23 Oct 2008 15:40:34 +0000 (15:40 +0000)]
Now step-31 is fully commented. However, one should look them through once again...

git-svn-id: https://svn.dealii.org/trunk@17324 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoUnify constructors in Trilinos matrices.
Martin Kronbichler [Thu, 23 Oct 2008 13:30:04 +0000 (13:30 +0000)]
Unify constructors in Trilinos matrices.

git-svn-id: https://svn.dealii.org/trunk@17321 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoAdd a function that allows to generate a sparse matrix only using m,n,n_nonzero_per_r...
Wolfgang Bangerth [Thu, 23 Oct 2008 04:04:41 +0000 (04:04 +0000)]
Add a function that allows to generate a sparse matrix only using m,n,n_nonzero_per_row, creating a local matrix. This allows to compile a bunch of testcases, but they abort right now. Will have to investigate later.

git-svn-id: https://svn.dealii.org/trunk@17318 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoFix references to PETSc.
Wolfgang Bangerth [Thu, 23 Oct 2008 03:41:35 +0000 (03:41 +0000)]
Fix references to PETSc.

git-svn-id: https://svn.dealii.org/trunk@17317 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoFix a few references to non-existent classes.
Wolfgang Bangerth [Thu, 23 Oct 2008 03:39:13 +0000 (03:39 +0000)]
Fix a few references to non-existent classes.

git-svn-id: https://svn.dealii.org/trunk@17314 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoWe don't support Trilinos full matrix types.
Wolfgang Bangerth [Thu, 23 Oct 2008 03:30:03 +0000 (03:30 +0000)]
We don't support Trilinos full matrix types.

git-svn-id: https://svn.dealii.org/trunk@17313 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoFix copyright dates.
Wolfgang Bangerth [Thu, 23 Oct 2008 03:25:45 +0000 (03:25 +0000)]
Fix copyright dates.

git-svn-id: https://svn.dealii.org/trunk@17312 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoAlways copy vector in equ.
Wolfgang Bangerth [Thu, 23 Oct 2008 03:25:40 +0000 (03:25 +0000)]
Always copy vector in equ.

git-svn-id: https://svn.dealii.org/trunk@17311 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoUpdate several tests.
Wolfgang Bangerth [Thu, 23 Oct 2008 03:10:32 +0000 (03:10 +0000)]
Update several tests.

git-svn-id: https://svn.dealii.org/trunk@17310 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoThe template functions that copied a deal.II vector to a Trilinos vector were there...
Wolfgang Bangerth [Thu, 23 Oct 2008 03:06:09 +0000 (03:06 +0000)]
The template functions that copied a deal.II vector to a Trilinos vector were there but not instantiated. Rewrite this to move the function into the base class and instantiate the template.

git-svn-id: https://svn.dealii.org/trunk@17309 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoAdd a bunch of tests for Trilinos. Many of them fail right now, we'll work on that...
Wolfgang Bangerth [Thu, 23 Oct 2008 02:08:33 +0000 (02:08 +0000)]
Add a bunch of tests for Trilinos. Many of them fail right now, we'll work on that over time.

git-svn-id: https://svn.dealii.org/trunk@17308 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoDrop the 'petsc_' prefix from all filenames to make it simpler to adapt the tests...
Wolfgang Bangerth [Thu, 23 Oct 2008 01:52:20 +0000 (01:52 +0000)]
Drop the 'petsc_' prefix from all filenames to make it simpler to adapt the tests to Trilinos.

git-svn-id: https://svn.dealii.org/trunk@17307 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoAdded a publication of mine.
Martin Kronbichler [Wed, 22 Oct 2008 13:45:12 +0000 (13:45 +0000)]
Added a publication of mine.

git-svn-id: https://svn.dealii.org/trunk@17306 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoOmit the constrained entries that will never be created anyway.
Martin Kronbichler [Wed, 22 Oct 2008 13:31:48 +0000 (13:31 +0000)]
Omit the constrained entries that will never be created anyway.

git-svn-id: https://svn.dealii.org/trunk@17305 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoChange step-31 and step-32 according to the change in the reinit function for Trilino...
Martin Kronbichler [Wed, 22 Oct 2008 10:21:35 +0000 (10:21 +0000)]
Change step-31 and step-32 according to the change in the reinit function for Trilinos sparse matrices.

git-svn-id: https://svn.dealii.org/trunk@17304 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoTrilinos sparse matrices can now also be reinitialized from the compressed sparsity...
Martin Kronbichler [Wed, 22 Oct 2008 10:15:10 +0000 (10:15 +0000)]
Trilinos sparse matrices can now also be reinitialized from the compressed sparsity pattern classes. Change step-31 and step-32 according to this change.

git-svn-id: https://svn.dealii.org/trunk@17303 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoAdded the possibility to omit constrained dofs. Apply this to step-31 and step-32.
Martin Kronbichler [Wed, 22 Oct 2008 07:48:42 +0000 (07:48 +0000)]
Added the possibility to omit constrained dofs. Apply this to step-31 and step-32.

git-svn-id: https://svn.dealii.org/trunk@17302 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoClarify a comment.
Wolfgang Bangerth [Wed, 22 Oct 2008 04:59:58 +0000 (04:59 +0000)]
Clarify a comment.

git-svn-id: https://svn.dealii.org/trunk@17301 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoRemove an unused variable.
Wolfgang Bangerth [Wed, 22 Oct 2008 04:33:07 +0000 (04:33 +0000)]
Remove an unused variable.

git-svn-id: https://svn.dealii.org/trunk@17300 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoRemove unused variable.
Wolfgang Bangerth [Wed, 22 Oct 2008 04:02:11 +0000 (04:02 +0000)]
Remove unused variable.

git-svn-id: https://svn.dealii.org/trunk@17299 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoOnly #define HAVE_LIBUMFPACK if we actually specified --with-umfpack* on the command...
Wolfgang Bangerth [Wed, 22 Oct 2008 03:58:02 +0000 (03:58 +0000)]
Only #define HAVE_LIBUMFPACK if we actually specified --with-umfpack* on the command line. Hopefully this is the last problem with the recent patch...

git-svn-id: https://svn.dealii.org/trunk@17298 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoGo back to the state where we disable UMFPACK unless it has explicitly been given...
Wolfgang Bangerth [Tue, 21 Oct 2008 15:53:10 +0000 (15:53 +0000)]
Go back to the state where we disable UMFPACK unless it has explicitly been given on the command line.

git-svn-id: https://svn.dealii.org/trunk@17296 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoFinally get the METIS include directory right as well...
Wolfgang Bangerth [Tue, 21 Oct 2008 15:26:02 +0000 (15:26 +0000)]
Finally get the METIS include directory right as well...

git-svn-id: https://svn.dealii.org/trunk@17293 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoUse DEAL_II_TRILINOS_LIBDIR instead of DEAL_II_TRILINOS_DIR/lib since the latter...
Wolfgang Bangerth [Tue, 21 Oct 2008 13:49:46 +0000 (13:49 +0000)]
Use DEAL_II_TRILINOS_LIBDIR instead of DEAL_II_TRILINOS_DIR/lib since the latter is not defined when using --with-trilinis-libs/--with-trilinos-include

git-svn-id: https://svn.dealii.org/trunk@17290 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoUse the proper library path for METIS.
Wolfgang Bangerth [Tue, 21 Oct 2008 13:45:34 +0000 (13:45 +0000)]
Use the proper library path for METIS.

git-svn-id: https://svn.dealii.org/trunk@17289 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoChanged the notation null_space into constant_modes to make the preconditioner class...
Martin Kronbichler [Tue, 21 Oct 2008 12:16:03 +0000 (12:16 +0000)]
Changed the notation null_space into constant_modes to make the preconditioner class more consistent.

git-svn-id: https://svn.dealii.org/trunk@17287 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoWrote some more comments.
Martin Kronbichler [Tue, 21 Oct 2008 10:49:48 +0000 (10:49 +0000)]
Wrote some more comments.

git-svn-id: https://svn.dealii.org/trunk@17286 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoOne thing regarding METIS that certainly needs to be fixed. However, there is still...
Martin Kronbichler [Tue, 21 Oct 2008 10:47:43 +0000 (10:47 +0000)]
One thing regarding METIS that certainly needs to be fixed. However, there is still a problem in the configure file.

git-svn-id: https://svn.dealii.org/trunk@17285 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoList the Trilinos libraries we use only once.
Wolfgang Bangerth [Tue, 21 Oct 2008 04:04:57 +0000 (04:04 +0000)]
List the Trilinos libraries we use only once.

git-svn-id: https://svn.dealii.org/trunk@17283 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoRemove a mesh that isn't needed here.
Wolfgang Bangerth [Mon, 20 Oct 2008 20:27:24 +0000 (20:27 +0000)]
Remove a mesh that isn't needed here.

git-svn-id: https://svn.dealii.org/trunk@17281 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoWrote some comments.
Martin Kronbichler [Mon, 20 Oct 2008 17:00:11 +0000 (17:00 +0000)]
Wrote some comments.

git-svn-id: https://svn.dealii.org/trunk@17280 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoAdd amesos and stratimikosamesos.
Wolfgang Bangerth [Sun, 19 Oct 2008 03:33:42 +0000 (03:33 +0000)]
Add amesos and stratimikosamesos.

git-svn-id: https://svn.dealii.org/trunk@17279 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoupdate
Wolfgang Bangerth [Sun, 19 Oct 2008 02:23:06 +0000 (02:23 +0000)]
update

git-svn-id: https://svn.dealii.org/trunk@17278 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoPatch by Christophe Trophime: allow using --with-XX-include and --with-XX-lib for...
Wolfgang Bangerth [Sun, 19 Oct 2008 02:21:10 +0000 (02:21 +0000)]
Patch by Christophe Trophime: allow using --with-XX-include and --with-XX-lib for XX={trilinos,metis,umfpack,netcdf} so that one can configure with libraries that have been installed in /usr or /opt.

git-svn-id: https://svn.dealii.org/trunk@17277 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoMove the PETSc and Trilinos documentation out of line.
Wolfgang Bangerth [Sat, 18 Oct 2008 11:46:06 +0000 (11:46 +0000)]
Move the PETSc and Trilinos documentation out of line.

git-svn-id: https://svn.dealii.org/trunk@17276 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoDo not build DoF distribution maps that are distributed evenly across all processors...
Wolfgang Bangerth [Sat, 18 Oct 2008 04:11:11 +0000 (04:11 +0000)]
Do not build DoF distribution maps that are distributed evenly across all processors but do so using the subdomain association of degrees of freedom. This should reduce the number of elements shipped across processors and indeed reduces the run-time of assembly functions by 5% on 2 processors and up to 30% on 20 processors.

git-svn-id: https://svn.dealii.org/trunk@17275 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoAdd to a comment.
Wolfgang Bangerth [Sat, 18 Oct 2008 04:01:27 +0000 (04:01 +0000)]
Add to a comment.

git-svn-id: https://svn.dealii.org/trunk@17274 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoWhen reinit-ing vectors, do not assume that we should create a new equidistributed...
Wolfgang Bangerth [Sat, 18 Oct 2008 04:01:20 +0000 (04:01 +0000)]
When reinit-ing vectors, do not assume that we should create a new equidistributed map but actually copy the Epetra_Map of the base vector.

git-svn-id: https://svn.dealii.org/trunk@17273 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoFix thinko: extract_subdomain_dofs may register the same dof for several subdomains...
Wolfgang Bangerth [Sat, 18 Oct 2008 03:41:44 +0000 (03:41 +0000)]
Fix thinko: extract_subdomain_dofs may register the same dof for several subdomains. This is not what we wanted in count_subdomain_association.

git-svn-id: https://svn.dealii.org/trunk@17272 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoProvide an alternative count_dofs_with_subdomain_association function that splits...
Wolfgang Bangerth [Sat, 18 Oct 2008 03:10:44 +0000 (03:10 +0000)]
Provide an alternative count_dofs_with_subdomain_association function that splits degrees of freedom among the various vector components.

git-svn-id: https://svn.dealii.org/trunk@17271 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoSuppress a segmentation fault when destroying the global deallog object that we get...
Wolfgang Bangerth [Fri, 17 Oct 2008 22:43:34 +0000 (22:43 +0000)]
Suppress a segmentation fault when destroying the global deallog object that we get when linking with Trilinos. We pay for this by creating a small memory leak, but that's still better.

git-svn-id: https://svn.dealii.org/trunk@17269 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoFix setting of cppflags.
Wolfgang Bangerth [Fri, 17 Oct 2008 22:18:25 +0000 (22:18 +0000)]
Fix setting of cppflags.

git-svn-id: https://svn.dealii.org/trunk@17267 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoGet the test for Trilinos header files right.
Wolfgang Bangerth [Fri, 17 Oct 2008 20:01:55 +0000 (20:01 +0000)]
Get the test for Trilinos header files right.

git-svn-id: https://svn.dealii.org/trunk@17265 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoCheck that all header files that we need from Trilinos are actually available.
Wolfgang Bangerth [Fri, 17 Oct 2008 19:54:47 +0000 (19:54 +0000)]
Check that all header files that we need from Trilinos are actually available.

git-svn-id: https://svn.dealii.org/trunk@17264 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoDon't forget to also link with Trilinos.
Wolfgang Bangerth [Fri, 17 Oct 2008 13:54:29 +0000 (13:54 +0000)]
Don't forget to also link with Trilinos.

git-svn-id: https://svn.dealii.org/trunk@17257 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoFixed an issue with boundary conditions.
Martin Kronbichler [Fri, 17 Oct 2008 07:55:53 +0000 (07:55 +0000)]
Fixed an issue with boundary conditions.

git-svn-id: https://svn.dealii.org/trunk@17256 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoAdd a draft version of a file that will describe the installation of PETSc and Trilinos.
Wolfgang Bangerth [Fri, 17 Oct 2008 00:33:44 +0000 (00:33 +0000)]
Add a draft version of a file that will describe the installation of PETSc and Trilinos.

git-svn-id: https://svn.dealii.org/trunk@17253 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoUse less -W... options when compiling with trilinos to suppress the millions of warni...
Wolfgang Bangerth [Fri, 17 Oct 2008 00:19:55 +0000 (00:19 +0000)]
Use less -W... options when compiling with trilinos to suppress the millions of warnings trilinos produces in its header files.

git-svn-id: https://svn.dealii.org/trunk@17252 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoFix a typo.
Wolfgang Bangerth [Fri, 17 Oct 2008 00:03:01 +0000 (00:03 +0000)]
Fix a typo.

git-svn-id: https://svn.dealii.org/trunk@17251 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoOnly use -rpath if the system actually supports it.
Wolfgang Bangerth [Thu, 16 Oct 2008 19:40:13 +0000 (19:40 +0000)]
Only use -rpath if the system actually supports it.

git-svn-id: https://svn.dealii.org/trunk@17245 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoChanged SparseDirectUMFPACK to use umfpack_dl_* routines
Moritz Allmaras [Thu, 16 Oct 2008 18:28:08 +0000 (18:28 +0000)]
Changed SparseDirectUMFPACK to use umfpack_dl_* routines

git-svn-id: https://svn.dealii.org/trunk@17243 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoSet the correct keywords this time.
Martin Kronbichler [Thu, 16 Oct 2008 15:50:34 +0000 (15:50 +0000)]
Set the correct keywords this time.

git-svn-id: https://svn.dealii.org/trunk@17240 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoUpdate block matrix residual.
Martin Kronbichler [Wed, 15 Oct 2008 14:36:39 +0000 (14:36 +0000)]
Update block matrix residual.

git-svn-id: https://svn.dealii.org/trunk@17221 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoInitialize a variable.
Wolfgang Bangerth [Wed, 15 Oct 2008 01:42:10 +0000 (01:42 +0000)]
Initialize a variable.

git-svn-id: https://svn.dealii.org/trunk@17220 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoAdd comment.
Wolfgang Bangerth [Tue, 14 Oct 2008 23:08:03 +0000 (23:08 +0000)]
Add comment.

git-svn-id: https://svn.dealii.org/trunk@17216 0785d39b-7218-0410-832d-ea1e28bc413d

15 years agoAdd a copy constructor that the compiler wants to see in some cases.
Wolfgang Bangerth [Tue, 14 Oct 2008 23:07:16 +0000 (23:07 +0000)]
Add a copy constructor that the compiler wants to see in some cases.

git-svn-id: https://svn.dealii.org/trunk@17215 0785d39b-7218-0410-832d-ea1e28bc413d


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