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https://gitweb.dealii.org/ - dealii-svn.git/log
bangerth [Wed, 29 Oct 2008 00:09:38 +0000 (00:09 +0000)]
Regenerate
git-svn-id: https://svn.dealii.org/trunk@17387
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bangerth [Wed, 29 Oct 2008 00:09:30 +0000 (00:09 +0000)]
Reindent.
git-svn-id: https://svn.dealii.org/trunk@17386
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bangerth [Wed, 29 Oct 2008 00:00:24 +0000 (00:00 +0000)]
Specify a few template arguments explicitly to help IBM's xlC.
git-svn-id: https://svn.dealii.org/trunk@17385
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bangerth [Tue, 28 Oct 2008 23:42:15 +0000 (23:42 +0000)]
Make things work with xlC
git-svn-id: https://svn.dealii.org/trunk@17384
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bangerth [Tue, 28 Oct 2008 23:24:24 +0000 (23:24 +0000)]
IBM's xlC is unhappy if we do -DBOOST_NO_SLIST on the command line and later do #define BOOST_NO_SLIST, claiming that the two have differing definitions. I assume that means that the former is equivalent to -DBOOST_NO_SLIST=1 whereas the latter sets it to ''. I'm relatively unsure about this, however. That said, the problem is easily solved by simply not redefining the symbol if it is already defined.
git-svn-id: https://svn.dealii.org/trunk@17383
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bangerth [Tue, 28 Oct 2008 22:23:35 +0000 (22:23 +0000)]
Can run on AIX using gcc4.3
git-svn-id: https://svn.dealii.org/trunk@17382
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bangerth [Tue, 28 Oct 2008 22:01:44 +0000 (22:01 +0000)]
Add newline to end of file. Apparently this confuses sed on AIX...
git-svn-id: https://svn.dealii.org/trunk@17381
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bangerth [Tue, 28 Oct 2008 21:56:12 +0000 (21:56 +0000)]
Do resize left hand side operand in BlockVector::operator=(BlockVector).
git-svn-id: https://svn.dealii.org/trunk@17380
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bangerth [Tue, 28 Oct 2008 19:52:12 +0000 (19:52 +0000)]
More comments.
git-svn-id: https://svn.dealii.org/trunk@17378
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bangerth [Tue, 28 Oct 2008 19:46:24 +0000 (19:46 +0000)]
Take over some changes from step-31.
git-svn-id: https://svn.dealii.org/trunk@17377
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bangerth [Tue, 28 Oct 2008 19:27:34 +0000 (19:27 +0000)]
Write time step in a more standard format.
git-svn-id: https://svn.dealii.org/trunk@17376
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bangerth [Tue, 28 Oct 2008 19:26:58 +0000 (19:26 +0000)]
Fix up a number of other issues and finish reading through the document.
git-svn-id: https://svn.dealii.org/trunk@17375
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kronbichler [Tue, 28 Oct 2008 14:33:16 +0000 (14:33 +0000)]
Comment the output strategy when using the new time stepping.
git-svn-id: https://svn.dealii.org/trunk@17368
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bangerth [Tue, 28 Oct 2008 14:05:23 +0000 (14:05 +0000)]
Only create the memory leak when linking with Trilinos.
git-svn-id: https://svn.dealii.org/trunk@17365
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kronbichler [Tue, 28 Oct 2008 12:17:56 +0000 (12:17 +0000)]
Now the Stokes solution is computed at the old time level with the old temperature, instead of the new one. This makes the discretization O(h^2) again.
git-svn-id: https://svn.dealii.org/trunk@17359
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bangerth [Mon, 27 Oct 2008 22:13:02 +0000 (22:13 +0000)]
Update test results after the change to the .cc file.
git-svn-id: https://svn.dealii.org/trunk@17356
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bangerth [Mon, 27 Oct 2008 22:10:48 +0000 (22:10 +0000)]
Update after the fix to GridOut in 17156.
git-svn-id: https://svn.dealii.org/trunk@17355
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bangerth [Mon, 27 Oct 2008 22:08:44 +0000 (22:08 +0000)]
Encode in the finite element name which quadrature formula was used.
git-svn-id: https://svn.dealii.org/trunk@17354
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bangerth [Mon, 27 Oct 2008 21:51:52 +0000 (21:51 +0000)]
update
git-svn-id: https://svn.dealii.org/trunk@17353
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bangerth [Mon, 27 Oct 2008 21:50:26 +0000 (21:50 +0000)]
update
git-svn-id: https://svn.dealii.org/trunk@17352
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heister [Mon, 27 Oct 2008 15:39:00 +0000 (15:39 +0000)]
Added MatrixTools::apply_boundary_values for PETScWrappers::MPI::BlockSparseMatrix and added CompressedSimpleSparsityPattern in doc/news/changes.
git-svn-id: https://svn.dealii.org/trunk@17351
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bangerth [Mon, 27 Oct 2008 14:57:31 +0000 (14:57 +0000)]
Further cleanups and documentation work.
git-svn-id: https://svn.dealii.org/trunk@17350
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kronbichler [Mon, 27 Oct 2008 13:32:22 +0000 (13:32 +0000)]
Slight changes in comments.
git-svn-id: https://svn.dealii.org/trunk@17349
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bangerth [Mon, 27 Oct 2008 03:51:38 +0000 (03:51 +0000)]
More docs.
git-svn-id: https://svn.dealii.org/trunk@17348
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bangerth [Mon, 27 Oct 2008 03:48:56 +0000 (03:48 +0000)]
Update after fix to GridOut in 17155.
git-svn-id: https://svn.dealii.org/trunk@17347
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bangerth [Mon, 27 Oct 2008 03:27:02 +0000 (03:27 +0000)]
Update after the changes to the Triangulation class in 17114.
git-svn-id: https://svn.dealii.org/trunk@17346
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bangerth [Mon, 27 Oct 2008 03:17:16 +0000 (03:17 +0000)]
Comment on two more functions. Change choice of quadrature points both in step-31 and -32.
git-svn-id: https://svn.dealii.org/trunk@17345
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bangerth [Mon, 27 Oct 2008 01:34:29 +0000 (01:34 +0000)]
New results after the change 17156 for the gnuplot output of GridOut.
git-svn-id: https://svn.dealii.org/trunk@17344
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bangerth [Sun, 26 Oct 2008 23:49:08 +0000 (23:49 +0000)]
Patch by Christian Cornelssen: If on .so systems, use the form libxx.so.6.2.1 fo shared libraries. Otherwise use libxx.6.2.1.so.
git-svn-id: https://svn.dealii.org/trunk@17343
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bangerth [Sun, 26 Oct 2008 23:47:55 +0000 (23:47 +0000)]
Patch by Christian Cornelssen: Fix an obvious misspelling.
git-svn-id: https://svn.dealii.org/trunk@17342
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bangerth [Sat, 25 Oct 2008 03:58:35 +0000 (03:58 +0000)]
Reindent.
git-svn-id: https://svn.dealii.org/trunk@17339
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bangerth [Sat, 25 Oct 2008 03:57:29 +0000 (03:57 +0000)]
Fix one bug (weighting the Schur complement) and add to the documentation.
git-svn-id: https://svn.dealii.org/trunk@17338
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kronbichler [Fri, 24 Oct 2008 16:21:47 +0000 (16:21 +0000)]
Some small updates.
git-svn-id: https://svn.dealii.org/trunk@17337
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kronbichler [Fri, 24 Oct 2008 14:21:13 +0000 (14:21 +0000)]
Updated some comments, removed some unnecessary code.
git-svn-id: https://svn.dealii.org/trunk@17335
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kronbichler [Fri, 24 Oct 2008 11:15:37 +0000 (11:15 +0000)]
Corrected one error.
git-svn-id: https://svn.dealii.org/trunk@17333
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kronbichler [Fri, 24 Oct 2008 10:36:50 +0000 (10:36 +0000)]
Wrote a TrilinosTools class that makes the use of Trilinos a bit easier.
git-svn-id: https://svn.dealii.org/trunk@17332
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kronbichler [Fri, 24 Oct 2008 09:43:58 +0000 (09:43 +0000)]
Removed some nonsens.
git-svn-id: https://svn.dealii.org/trunk@17331
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bangerth [Thu, 23 Oct 2008 20:10:09 +0000 (20:10 +0000)]
Generate template instantiations for all currently available vectors.
git-svn-id: https://svn.dealii.org/trunk@17330
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bangerth [Thu, 23 Oct 2008 18:37:54 +0000 (18:37 +0000)]
Don't forget to also multiply the preconditioner term with eta.
git-svn-id: https://svn.dealii.org/trunk@17326
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kronbichler [Thu, 23 Oct 2008 15:40:34 +0000 (15:40 +0000)]
Now step-31 is fully commented. However, one should look them through once again...
git-svn-id: https://svn.dealii.org/trunk@17324
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kronbichler [Thu, 23 Oct 2008 13:30:04 +0000 (13:30 +0000)]
Unify constructors in Trilinos matrices.
git-svn-id: https://svn.dealii.org/trunk@17321
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bangerth [Thu, 23 Oct 2008 04:04:41 +0000 (04:04 +0000)]
Add a function that allows to generate a sparse matrix only using m,n,n_nonzero_per_row, creating a local matrix. This allows to compile a bunch of testcases, but they abort right now. Will have to investigate later.
git-svn-id: https://svn.dealii.org/trunk@17318
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bangerth [Thu, 23 Oct 2008 03:41:35 +0000 (03:41 +0000)]
Fix references to PETSc.
git-svn-id: https://svn.dealii.org/trunk@17317
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bangerth [Thu, 23 Oct 2008 03:39:13 +0000 (03:39 +0000)]
Fix a few references to non-existent classes.
git-svn-id: https://svn.dealii.org/trunk@17314
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bangerth [Thu, 23 Oct 2008 03:30:03 +0000 (03:30 +0000)]
We don't support Trilinos full matrix types.
git-svn-id: https://svn.dealii.org/trunk@17313
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bangerth [Thu, 23 Oct 2008 03:25:45 +0000 (03:25 +0000)]
Fix copyright dates.
git-svn-id: https://svn.dealii.org/trunk@17312
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bangerth [Thu, 23 Oct 2008 03:25:40 +0000 (03:25 +0000)]
Always copy vector in equ.
git-svn-id: https://svn.dealii.org/trunk@17311
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bangerth [Thu, 23 Oct 2008 03:10:32 +0000 (03:10 +0000)]
Update several tests.
git-svn-id: https://svn.dealii.org/trunk@17310
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bangerth [Thu, 23 Oct 2008 03:06:09 +0000 (03:06 +0000)]
The template functions that copied a deal.II vector to a Trilinos vector were there but not instantiated. Rewrite this to move the function into the base class and instantiate the template.
git-svn-id: https://svn.dealii.org/trunk@17309
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bangerth [Thu, 23 Oct 2008 02:08:33 +0000 (02:08 +0000)]
Add a bunch of tests for Trilinos. Many of them fail right now, we'll work on that over time.
git-svn-id: https://svn.dealii.org/trunk@17308
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bangerth [Thu, 23 Oct 2008 01:52:20 +0000 (01:52 +0000)]
Drop the 'petsc_' prefix from all filenames to make it simpler to adapt the tests to Trilinos.
git-svn-id: https://svn.dealii.org/trunk@17307
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kronbichler [Wed, 22 Oct 2008 13:45:12 +0000 (13:45 +0000)]
Added a publication of mine.
git-svn-id: https://svn.dealii.org/trunk@17306
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kronbichler [Wed, 22 Oct 2008 13:31:48 +0000 (13:31 +0000)]
Omit the constrained entries that will never be created anyway.
git-svn-id: https://svn.dealii.org/trunk@17305
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kronbichler [Wed, 22 Oct 2008 10:21:35 +0000 (10:21 +0000)]
Change step-31 and step-32 according to the change in the reinit function for Trilinos sparse matrices.
git-svn-id: https://svn.dealii.org/trunk@17304
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kronbichler [Wed, 22 Oct 2008 10:15:10 +0000 (10:15 +0000)]
Trilinos sparse matrices can now also be reinitialized from the compressed sparsity pattern classes. Change step-31 and step-32 according to this change.
git-svn-id: https://svn.dealii.org/trunk@17303
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kronbichler [Wed, 22 Oct 2008 07:48:42 +0000 (07:48 +0000)]
Added the possibility to omit constrained dofs. Apply this to step-31 and step-32.
git-svn-id: https://svn.dealii.org/trunk@17302
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bangerth [Wed, 22 Oct 2008 04:59:58 +0000 (04:59 +0000)]
Clarify a comment.
git-svn-id: https://svn.dealii.org/trunk@17301
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bangerth [Wed, 22 Oct 2008 04:33:07 +0000 (04:33 +0000)]
Remove an unused variable.
git-svn-id: https://svn.dealii.org/trunk@17300
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bangerth [Wed, 22 Oct 2008 04:02:11 +0000 (04:02 +0000)]
Remove unused variable.
git-svn-id: https://svn.dealii.org/trunk@17299
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bangerth [Wed, 22 Oct 2008 03:58:02 +0000 (03:58 +0000)]
Only #define HAVE_LIBUMFPACK if we actually specified --with-umfpack* on the command line. Hopefully this is the last problem with the recent patch...
git-svn-id: https://svn.dealii.org/trunk@17298
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bangerth [Tue, 21 Oct 2008 15:53:10 +0000 (15:53 +0000)]
Go back to the state where we disable UMFPACK unless it has explicitly been given on the command line.
git-svn-id: https://svn.dealii.org/trunk@17296
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bangerth [Tue, 21 Oct 2008 15:26:02 +0000 (15:26 +0000)]
Finally get the METIS include directory right as well...
git-svn-id: https://svn.dealii.org/trunk@17293
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bangerth [Tue, 21 Oct 2008 13:49:46 +0000 (13:49 +0000)]
Use DEAL_II_TRILINOS_LIBDIR instead of DEAL_II_TRILINOS_DIR/lib since the latter is not defined when using --with-trilinis-libs/--with-trilinos-include
git-svn-id: https://svn.dealii.org/trunk@17290
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bangerth [Tue, 21 Oct 2008 13:45:34 +0000 (13:45 +0000)]
Use the proper library path for METIS.
git-svn-id: https://svn.dealii.org/trunk@17289
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kronbichler [Tue, 21 Oct 2008 12:16:03 +0000 (12:16 +0000)]
Changed the notation null_space into constant_modes to make the preconditioner class more consistent.
git-svn-id: https://svn.dealii.org/trunk@17287
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kronbichler [Tue, 21 Oct 2008 10:49:48 +0000 (10:49 +0000)]
Wrote some more comments.
git-svn-id: https://svn.dealii.org/trunk@17286
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kronbichler [Tue, 21 Oct 2008 10:47:43 +0000 (10:47 +0000)]
One thing regarding METIS that certainly needs to be fixed. However, there is still a problem in the configure file.
git-svn-id: https://svn.dealii.org/trunk@17285
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bangerth [Tue, 21 Oct 2008 04:04:57 +0000 (04:04 +0000)]
List the Trilinos libraries we use only once.
git-svn-id: https://svn.dealii.org/trunk@17283
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bangerth [Mon, 20 Oct 2008 20:27:24 +0000 (20:27 +0000)]
Remove a mesh that isn't needed here.
git-svn-id: https://svn.dealii.org/trunk@17281
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kronbichler [Mon, 20 Oct 2008 17:00:11 +0000 (17:00 +0000)]
Wrote some comments.
git-svn-id: https://svn.dealii.org/trunk@17280
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bangerth [Sun, 19 Oct 2008 03:33:42 +0000 (03:33 +0000)]
Add amesos and stratimikosamesos.
git-svn-id: https://svn.dealii.org/trunk@17279
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bangerth [Sun, 19 Oct 2008 02:23:06 +0000 (02:23 +0000)]
update
git-svn-id: https://svn.dealii.org/trunk@17278
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bangerth [Sun, 19 Oct 2008 02:21:10 +0000 (02:21 +0000)]
Patch by Christophe Trophime: allow using --with-XX-include and --with-XX-lib for XX={trilinos,metis,umfpack,netcdf} so that one can configure with libraries that have been installed in /usr or /opt.
git-svn-id: https://svn.dealii.org/trunk@17277
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bangerth [Sat, 18 Oct 2008 11:46:06 +0000 (11:46 +0000)]
Move the PETSc and Trilinos documentation out of line.
git-svn-id: https://svn.dealii.org/trunk@17276
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bangerth [Sat, 18 Oct 2008 04:11:11 +0000 (04:11 +0000)]
Do not build DoF distribution maps that are distributed evenly across all processors but do so using the subdomain association of degrees of freedom. This should reduce the number of elements shipped across processors and indeed reduces the run-time of assembly functions by 5% on 2 processors and up to 30% on 20 processors.
git-svn-id: https://svn.dealii.org/trunk@17275
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bangerth [Sat, 18 Oct 2008 04:01:27 +0000 (04:01 +0000)]
Add to a comment.
git-svn-id: https://svn.dealii.org/trunk@17274
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bangerth [Sat, 18 Oct 2008 04:01:20 +0000 (04:01 +0000)]
When reinit-ing vectors, do not assume that we should create a new equidistributed map but actually copy the Epetra_Map of the base vector.
git-svn-id: https://svn.dealii.org/trunk@17273
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bangerth [Sat, 18 Oct 2008 03:41:44 +0000 (03:41 +0000)]
Fix thinko: extract_subdomain_dofs may register the same dof for several subdomains. This is not what we wanted in count_subdomain_association.
git-svn-id: https://svn.dealii.org/trunk@17272
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bangerth [Sat, 18 Oct 2008 03:10:44 +0000 (03:10 +0000)]
Provide an alternative count_dofs_with_subdomain_association function that splits degrees of freedom among the various vector components.
git-svn-id: https://svn.dealii.org/trunk@17271
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bangerth [Fri, 17 Oct 2008 22:43:34 +0000 (22:43 +0000)]
Suppress a segmentation fault when destroying the global deallog object that we get when linking with Trilinos. We pay for this by creating a small memory leak, but that's still better.
git-svn-id: https://svn.dealii.org/trunk@17269
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bangerth [Fri, 17 Oct 2008 22:18:25 +0000 (22:18 +0000)]
Fix setting of cppflags.
git-svn-id: https://svn.dealii.org/trunk@17267
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bangerth [Fri, 17 Oct 2008 20:01:55 +0000 (20:01 +0000)]
Get the test for Trilinos header files right.
git-svn-id: https://svn.dealii.org/trunk@17265
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bangerth [Fri, 17 Oct 2008 19:54:47 +0000 (19:54 +0000)]
Check that all header files that we need from Trilinos are actually available.
git-svn-id: https://svn.dealii.org/trunk@17264
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bangerth [Fri, 17 Oct 2008 13:54:29 +0000 (13:54 +0000)]
Don't forget to also link with Trilinos.
git-svn-id: https://svn.dealii.org/trunk@17257
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kronbichler [Fri, 17 Oct 2008 07:55:53 +0000 (07:55 +0000)]
Fixed an issue with boundary conditions.
git-svn-id: https://svn.dealii.org/trunk@17256
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bangerth [Fri, 17 Oct 2008 00:33:44 +0000 (00:33 +0000)]
Add a draft version of a file that will describe the installation of PETSc and Trilinos.
git-svn-id: https://svn.dealii.org/trunk@17253
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bangerth [Fri, 17 Oct 2008 00:19:55 +0000 (00:19 +0000)]
Use less -W... options when compiling with trilinos to suppress the millions of warnings trilinos produces in its header files.
git-svn-id: https://svn.dealii.org/trunk@17252
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bangerth [Fri, 17 Oct 2008 00:03:01 +0000 (00:03 +0000)]
Fix a typo.
git-svn-id: https://svn.dealii.org/trunk@17251
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bangerth [Thu, 16 Oct 2008 19:40:13 +0000 (19:40 +0000)]
Only use -rpath if the system actually supports it.
git-svn-id: https://svn.dealii.org/trunk@17245
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allmaras [Thu, 16 Oct 2008 18:28:08 +0000 (18:28 +0000)]
Changed SparseDirectUMFPACK to use umfpack_dl_* routines
git-svn-id: https://svn.dealii.org/trunk@17243
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kronbichler [Thu, 16 Oct 2008 15:50:34 +0000 (15:50 +0000)]
Set the correct keywords this time.
git-svn-id: https://svn.dealii.org/trunk@17240
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kronbichler [Wed, 15 Oct 2008 14:36:39 +0000 (14:36 +0000)]
Update block matrix residual.
git-svn-id: https://svn.dealii.org/trunk@17221
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bangerth [Wed, 15 Oct 2008 01:42:10 +0000 (01:42 +0000)]
Initialize a variable.
git-svn-id: https://svn.dealii.org/trunk@17220
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bangerth [Tue, 14 Oct 2008 23:08:03 +0000 (23:08 +0000)]
Add comment.
git-svn-id: https://svn.dealii.org/trunk@17216
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bangerth [Tue, 14 Oct 2008 23:07:16 +0000 (23:07 +0000)]
Add a copy constructor that the compiler wants to see in some cases.
git-svn-id: https://svn.dealii.org/trunk@17215
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heister [Tue, 14 Oct 2008 10:36:48 +0000 (10:36 +0000)]
fixed documentation for configuring Trilinos in readme.html.
git-svn-id: https://svn.dealii.org/trunk@17202
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bangerth [Mon, 13 Oct 2008 18:09:20 +0000 (18:09 +0000)]
Fix a multithreading problem with the Raviart Thomas polynomials.
git-svn-id: https://svn.dealii.org/trunk@17196
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kronbichler [Mon, 13 Oct 2008 16:02:03 +0000 (16:02 +0000)]
Set file Id correctly.
git-svn-id: https://svn.dealii.org/trunk@17195
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kronbichler [Mon, 13 Oct 2008 13:35:15 +0000 (13:35 +0000)]
Undo an unwanted check-in.
git-svn-id: https://svn.dealii.org/trunk@17193
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kronbichler [Mon, 13 Oct 2008 13:32:18 +0000 (13:32 +0000)]
Changed interface in Trilinos block solver to the one in the Trilinos solver (non-block) class.
git-svn-id: https://svn.dealii.org/trunk@17192
0785d39b -7218-0410-832d-
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