]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
6 years agoFix warnings for bundled muParser 5856/head
Daniel Arndt [Sun, 4 Feb 2018 13:31:19 +0000 (14:31 +0100)]
Fix warnings for bundled muParser

6 years agoFix warnings for bundled boost
Daniel Arndt [Sun, 4 Feb 2018 13:30:20 +0000 (14:30 +0100)]
Fix warnings for bundled boost

6 years agoMerge pull request #5855 from masterleinad/replace_last_boundary_occurence
Denis Davydov [Sun, 4 Feb 2018 08:58:03 +0000 (09:58 +0100)]
Merge pull request #5855 from masterleinad/replace_last_boundary_occurence

Replace last Boundary occurences in the test folder

6 years agoMerge pull request #5805 from dangars/gmsh-test
Denis Davydov [Sun, 4 Feb 2018 08:57:15 +0000 (09:57 +0100)]
Merge pull request #5805 from dangars/gmsh-test

Add Transfinite Line

6 years agoMerge pull request #5853 from drwells/unused-scalapack
Jean-Paul Pelteret [Sun, 4 Feb 2018 08:26:23 +0000 (09:26 +0100)]
Merge pull request #5853 from drwells/unused-scalapack

deal with unused variable warnings in scalapack bindings and bundled code.

6 years agoRemove tria_boundary.h and replace Boundary<2>::FaceVertexNormals 5855/head
Daniel Arndt [Sat, 3 Feb 2018 18:50:28 +0000 (19:50 +0100)]
Remove tria_boundary.h and replace Boundary<2>::FaceVertexNormals

6 years agoMerge pull request #5852 from drwells/remove-cylindermanifold-specialization
David Wells [Sat, 3 Feb 2018 22:48:01 +0000 (17:48 -0500)]
Merge pull request #5852 from drwells/remove-cylindermanifold-specialization

Remove the hidden CylindricalManifold<dim, 3> code.

6 years agoSuppress warnings in bundled packages. 5853/head
David Wells [Sat, 3 Feb 2018 20:28:37 +0000 (15:28 -0500)]
Suppress warnings in bundled packages.

6 years agocomment out unused variables in scalapack bindings.
David Wells [Sat, 3 Feb 2018 20:21:09 +0000 (15:21 -0500)]
comment out unused variables in scalapack bindings.

6 years agoReplace the last Boundary object in the tests
Daniel Arndt [Sat, 3 Feb 2018 18:19:45 +0000 (19:19 +0100)]
Replace the last Boundary object in the tests

6 years agoRemove the hidden CylindricalManifold<dim, 3> code. 5852/head
David Wells [Sat, 3 Feb 2018 18:13:45 +0000 (13:13 -0500)]
Remove the hidden CylindricalManifold<dim, 3> code.

It turns out that we have converted enough compile-time dimensionality checks to
run-time dimensionality checks that we can use just one implementation for
CylindricalManifold instead of two.

6 years agoMerge pull request #5846 from bangerth/step-dependencies
Daniel Arndt [Sat, 3 Feb 2018 17:19:16 +0000 (18:19 +0100)]
Merge pull request #5846 from bangerth/step-dependencies

List for each tutorial what others it depends on.

6 years agoMerge pull request #5845 from bangerth/doc-update
Daniel Arndt [Sat, 3 Feb 2018 16:18:30 +0000 (17:18 +0100)]
Merge pull request #5845 from bangerth/doc-update

Update documentation around hyper-balls and spherical manifolds.

6 years agoMerge pull request #5834 from masterleinad/fullmatrix_size_type
Wolfgang Bangerth [Sat, 3 Feb 2018 14:57:19 +0000 (07:57 -0700)]
Merge pull request #5834 from masterleinad/fullmatrix_size_type

FullMatrix size type

6 years agoMerge pull request #5850 from masterleinad/fix_scalapack_10
Wolfgang Bangerth [Sat, 3 Feb 2018 14:48:44 +0000 (07:48 -0700)]
Merge pull request #5850 from masterleinad/fix_scalapack_10

Fix scalapack_10

6 years agoFix scalapack_10 5850/head
Daniel Arndt [Sat, 3 Feb 2018 13:30:29 +0000 (14:30 +0100)]
Fix scalapack_10

6 years agoChangelog entry 5834/head
Daniel Arndt [Wed, 31 Jan 2018 23:57:11 +0000 (00:57 +0100)]
Changelog entry

6 years agoUpdate test output
Daniel Arndt [Sat, 3 Feb 2018 00:40:15 +0000 (01:40 +0100)]
Update test output

6 years agostatic_cast in full_matrix.templates.h
Daniel Arndt [Fri, 2 Feb 2018 12:34:07 +0000 (13:34 +0100)]
static_cast in full_matrix.templates.h

6 years agostatic_cast in lapack_full_matrix.h
Daniel Arndt [Fri, 2 Feb 2018 12:33:34 +0000 (13:33 +0100)]
static_cast in lapack_full_matrix.h

6 years agoReplace n_rows() by m(), n_cols() by n() in lapack_full_matrix.cc
Daniel Arndt [Fri, 2 Feb 2018 11:43:56 +0000 (12:43 +0100)]
Replace n_rows() by m(), n_cols() by n() in lapack_full_matrix.cc

6 years agoChange size_type for LAPACKFullMatrix
Daniel Arndt [Fri, 2 Feb 2018 10:14:40 +0000 (11:14 +0100)]
Change size_type for LAPACKFullMatrix

6 years agoChange size_type for FullMatrix
Daniel Arndt [Fri, 2 Feb 2018 10:15:04 +0000 (11:15 +0100)]
Change size_type for FullMatrix

6 years agoUse size_type in table.h for index access
Daniel Arndt [Fri, 2 Feb 2018 09:43:37 +0000 (10:43 +0100)]
Use size_type in table.h for index access

6 years agoUse std::size_t in table_indices.h for index access
Daniel Arndt [Fri, 2 Feb 2018 09:45:35 +0000 (10:45 +0100)]
Use std::size_t in table_indices.h for index access

6 years agoRemove const_cast in lapack_full_matrix.cc
Daniel Arndt [Fri, 2 Feb 2018 10:30:05 +0000 (11:30 +0100)]
Remove const_cast in lapack_full_matrix.cc

6 years agoUse the type of the largest value in AssertIndexRange
Daniel Arndt [Fri, 2 Feb 2018 09:06:08 +0000 (10:06 +0100)]
Use the type of the largest value in AssertIndexRange

6 years agoList for each tutorial what others it depends on. 5846/head
Wolfgang Bangerth [Fri, 2 Feb 2018 21:00:55 +0000 (14:00 -0700)]
List for each tutorial what others it depends on.

6 years agoUpdate documentation around hyper-balls and spherical manifolds. 5845/head
Wolfgang Bangerth [Fri, 2 Feb 2018 20:26:26 +0000 (13:26 -0700)]
Update documentation around hyper-balls and spherical manifolds.

In particular, link to the discussion in the results section of step-6.

6 years agoMerge pull request #5842 from jppelteret/add_dim_0_tensor_assignment_operator
Daniel Arndt [Fri, 2 Feb 2018 12:27:46 +0000 (13:27 +0100)]
Merge pull request #5842 from jppelteret/add_dim_0_tensor_assignment_operator

Add operator assigning a scalar to a Tensor<0>.

6 years agoMerge pull request #5843 from masterleinad/unused_dof_handler
David Wells [Fri, 2 Feb 2018 11:51:53 +0000 (06:51 -0500)]
Merge pull request #5843 from masterleinad/unused_dof_handler

Fix unused variables in dof_handler.cc

6 years agoFix unused variables in dof_handler.cc 5843/head
Daniel Arndt [Fri, 2 Feb 2018 09:36:50 +0000 (10:36 +0100)]
Fix unused variables in dof_handler.cc

6 years agoChange the default value of a parameter from 0 to nullptr. 5842/head
Jean-Paul Pelteret [Fri, 2 Feb 2018 06:15:25 +0000 (07:15 +0100)]
Change the default value of a parameter from 0 to nullptr.

6 years agoFacilitate casting between tensors of AD numbers to floats.
Jean-Paul Pelteret [Fri, 2 Feb 2018 06:14:16 +0000 (07:14 +0100)]
Facilitate casting between tensors of AD numbers to floats.

6 years agoAdd operator assigning a scalar to a Tensor<0>.
Jean-Paul Pelteret [Fri, 2 Feb 2018 05:51:04 +0000 (06:51 +0100)]
Add operator assigning a scalar to a Tensor<0>.

6 years agoMerge pull request #5781 from BenBrands/scalapack
Wolfgang Bangerth [Fri, 2 Feb 2018 03:04:59 +0000 (20:04 -0700)]
Merge pull request #5781 from BenBrands/scalapack

ScaLAPACKMatrix: add routines to save/load matrix to/from disc

6 years agoMerge pull request #5841 from jppelteret/fix_5840
Denis Davydov [Thu, 1 Feb 2018 20:10:52 +0000 (21:10 +0100)]
Merge pull request #5841 from jppelteret/fix_5840

Remove a typedef thats unused when compiling in release mode.

6 years agoAdd Transfinite Line 5805/head
Daniel Garcia-Sanchez [Thu, 25 Jan 2018 20:26:28 +0000 (21:26 +0100)]
Add Transfinite Line

6 years agoRemove a typedef thats unused when compiling in release mode. 5841/head
Jean-Paul Pelteret [Thu, 1 Feb 2018 18:03:14 +0000 (19:03 +0100)]
Remove a typedef thats unused when compiling in release mode.

Fixes 5840.

6 years agoMerge pull request #5827 from bangerth/sort-code-gallery
Denis Davydov [Thu, 1 Feb 2018 16:44:25 +0000 (17:44 +0100)]
Merge pull request #5827 from bangerth/sort-code-gallery

Sort entries to the code gallery by their name, not their directory name.

6 years agoMerge pull request #5837 from QiaoLei-88/fix_icc15_compile
Denis Davydov [Thu, 1 Feb 2018 16:21:19 +0000 (17:21 +0100)]
Merge pull request #5837 from QiaoLei-88/fix_icc15_compile

make icc 15 compiles on CentOS 7

6 years agoMerge pull request #5836 from bangerth/fix-wording
Denis Davydov [Thu, 1 Feb 2018 13:49:07 +0000 (14:49 +0100)]
Merge pull request #5836 from bangerth/fix-wording

Use less obscure wording.

6 years agoUse less obscure wording. 5836/head
Wolfgang Bangerth [Thu, 1 Feb 2018 03:38:09 +0000 (20:38 -0700)]
Use less obscure wording.

6 years agoMerge pull request #5838 from kronbichler/mf_dg_step1
David Wells [Thu, 1 Feb 2018 12:59:53 +0000 (07:59 -0500)]
Merge pull request #5838 from kronbichler/mf_dg_step1

Add macro for __restrict keyword.

6 years agoAdd macro for __restrict keyword. 5838/head
Martin Kronbichler [Thu, 1 Feb 2018 10:23:01 +0000 (11:23 +0100)]
Add macro for __restrict keyword.

6 years agoMerge pull request #5831 from masterleinad/fix_periodicity_01
Denis Davydov [Thu, 1 Feb 2018 05:37:59 +0000 (06:37 +0100)]
Merge pull request #5831 from masterleinad/fix_periodicity_01

Fix mpi/periodicity_01

6 years agoMerge pull request #5835 from Rombur/trilinos_documentation
Wolfgang Bangerth [Thu, 1 Feb 2018 03:16:16 +0000 (20:16 -0700)]
Merge pull request #5835 from Rombur/trilinos_documentation

Remove reference to a function that does not exist

6 years agosatisfy icc 15 about template arguments of std::map's 5837/head
Lei Qiao [Thu, 1 Feb 2018 01:49:55 +0000 (09:49 +0800)]
satisfy icc 15 about template arguments of std::map's

6 years agoRemove reference to a function that does not exist 5835/head
Bruno Turcksin [Thu, 1 Feb 2018 02:55:55 +0000 (21:55 -0500)]
Remove reference to a function that does not exist

6 years agoMerge pull request #5833 from masterleinad/fix_enriched_ice
David Wells [Thu, 1 Feb 2018 02:04:36 +0000 (21:04 -0500)]
Merge pull request #5833 from masterleinad/fix_enriched_ice

Fix ICC-16 ICE in fe_enriched.h

6 years agoWorkaround ICC compiler bug 5833/head
Daniel Arndt [Wed, 31 Jan 2018 18:37:29 +0000 (19:37 +0100)]
Workaround ICC compiler bug

6 years agoMerge pull request #5832 from masterleinad/fix_typo_finitelement
David Wells [Wed, 31 Jan 2018 15:55:29 +0000 (10:55 -0500)]
Merge pull request #5832 from masterleinad/fix_typo_finitelement

Fix typo FinitElement

6 years agoFix typo FinitElement 5832/head
Daniel Arndt [Wed, 31 Jan 2018 15:41:56 +0000 (16:41 +0100)]
Fix typo FinitElement

6 years agoMerge pull request #5826 from Rombur/cusparse_assert
Bruno Turcksin [Wed, 31 Jan 2018 13:23:54 +0000 (08:23 -0500)]
Merge pull request #5826 from Rombur/cusparse_assert

Cusparse assert

6 years agoMerge pull request #5714 from masterleinad/replace_hypersphere
Martin Kronbichler [Wed, 31 Jan 2018 10:25:11 +0000 (11:25 +0100)]
Merge pull request #5714 from masterleinad/replace_hypersphere

 Replace HyperShellBoundary by SphericalManifold in tests

6 years agoAdd changelog entry 5826/head
Bruno Turcksin [Mon, 29 Jan 2018 15:49:53 +0000 (10:49 -0500)]
Add changelog entry

6 years agoAdd AssertCusparse macro to check that a cuSPARSE routine was successful
Bruno Turcksin [Mon, 29 Jan 2018 15:44:59 +0000 (10:44 -0500)]
Add AssertCusparse macro to check that a cuSPARSE routine was successful

6 years agoImprove documentation 5831/head
Daniel Arndt [Tue, 30 Jan 2018 22:12:28 +0000 (23:12 +0100)]
Improve documentation

6 years agoClean up 5714/head
Daniel Arndt [Wed, 10 Jan 2018 09:13:59 +0000 (10:13 +0100)]
Clean up

6 years agoReplace HyperShellBoundary by SphericalManifold in tests
Daniel Arndt [Wed, 3 Jan 2018 12:04:55 +0000 (13:04 +0100)]
Replace HyperShellBoundary by SphericalManifold in tests

6 years agoFix else branch in SphericalManifold::normals_at_vertices
Daniel Arndt [Tue, 30 Jan 2018 21:43:10 +0000 (22:43 +0100)]
Fix else branch in SphericalManifold::normals_at_vertices

6 years agoFix mpi/periodicity_01
Daniel Arndt [Tue, 30 Jan 2018 15:23:12 +0000 (16:23 +0100)]
Fix mpi/periodicity_01

6 years agoMerge pull request #5830 from kronbichler/fix_mg_transfer_mf
Daniel Arndt [Tue, 30 Jan 2018 13:11:26 +0000 (14:11 +0100)]
Merge pull request #5830 from kronbichler/fix_mg_transfer_mf

Fix matrix-free transfer for multi-components FE and p>10

6 years agoAdd changelog. 5830/head
Martin Kronbichler [Tue, 30 Jan 2018 10:21:34 +0000 (11:21 +0100)]
Add changelog.

6 years agoAdd test.
Martin Kronbichler [Tue, 30 Jan 2018 10:19:01 +0000 (11:19 +0100)]
Add test.

6 years agoFix transfer for high polynomial degrees.
Martin Kronbichler [Tue, 30 Jan 2018 10:18:50 +0000 (11:18 +0100)]
Fix transfer for high polynomial degrees.

6 years agoMerge pull request #5819 from drwells/project-to-object-tol
Martin Kronbichler [Tue, 30 Jan 2018 08:13:42 +0000 (09:13 +0100)]
Merge pull request #5819 from drwells/project-to-object-tol

Improve tolerances for errors near zero.

6 years agoMerge pull request #5711 from masterleinad/simplify_normal_spherical
Martin Kronbichler [Tue, 30 Jan 2018 08:11:43 +0000 (09:11 +0100)]
Merge pull request #5711 from masterleinad/simplify_normal_spherical

Simplify implementation for normal_vector and get_normals_at_vertices in SphericalManifold

6 years agoSort entries to the code gallery by their name, not their directory name. 5827/head
Wolfgang Bangerth [Mon, 29 Jan 2018 22:13:20 +0000 (15:13 -0700)]
Sort entries to the code gallery by their name, not their directory name.

6 years agoseparated tests for copying sub-matrices 5781/head
Benjamin Brands [Mon, 29 Jan 2018 20:17:46 +0000 (21:17 +0100)]
separated tests for copying sub-matrices

6 years agoMerge pull request #5825 from Rombur/fix_cuda
Wolfgang Bangerth [Mon, 29 Jan 2018 17:48:55 +0000 (10:48 -0700)]
Merge pull request #5825 from Rombur/fix_cuda

Fix a bug in a CUDA vector constructor

6 years agoSimplify implementation for normal_vector and get_normals_at_vertices in SphericalMan... 5711/head
Daniel Arndt [Wed, 10 Jan 2018 00:05:34 +0000 (01:05 +0100)]
Simplify implementation for normal_vector and get_normals_at_vertices in SphericalManifold

6 years agocorrections_I
Benjamin Brands [Wed, 24 Jan 2018 08:14:49 +0000 (09:14 +0100)]
corrections_I

6 years agoimprove documentation and minor clean-ups
Benjamin Brands [Tue, 23 Jan 2018 09:37:01 +0000 (10:37 +0100)]
improve documentation and minor clean-ups

6 years agoadd routine copy_to to copy content of a submatrix of A to a submatrix of B
Benjamin Brands [Tue, 23 Jan 2018 09:18:49 +0000 (10:18 +0100)]
add routine copy_to to copy content of a submatrix of A to a submatrix of B

6 years agoadd tests for save/load of ScaLapackMatrix
Benjamin Brands [Tue, 23 Jan 2018 09:14:57 +0000 (10:14 +0100)]
add tests for save/load of ScaLapackMatrix

6 years agoadd routines to save/load ScaLAPACK matrices using HDF5
Benjamin Brands [Tue, 23 Jan 2018 09:11:27 +0000 (10:11 +0100)]
add routines to save/load ScaLAPACK matrices using HDF5

6 years agoadd hdf5_type_id to return HDF5 type
Benjamin Brands [Tue, 23 Jan 2018 08:47:26 +0000 (09:47 +0100)]
add hdf5_type_id to return HDF5 type

6 years agoMerge pull request #5823 from BenBrands/move_some_to_some
Denis Davydov [Mon, 29 Jan 2018 10:05:06 +0000 (11:05 +0100)]
Merge pull request #5823 from BenBrands/move_some_to_some

move implementation of Utilities::MPI::some_to_some()

6 years agoFix a bug in a CUDA vector constructor 5825/head
Bruno Turcksin [Mon, 29 Jan 2018 00:33:31 +0000 (19:33 -0500)]
Fix a bug in a CUDA vector constructor

The constructor did not set the values in the vector to zero

6 years agoMerge pull request #5824 from masterleinad/rm_sd_ids_p_08
David Wells [Sun, 28 Jan 2018 21:59:02 +0000 (16:59 -0500)]
Merge pull request #5824 from masterleinad/rm_sd_ids_p_08

Remove subdomain_ids_parallel_08

6 years agoMerge pull request #5779 from masterleinad/fix_periodic_dofs
Daniel Arndt [Sun, 28 Jan 2018 20:00:23 +0000 (21:00 +0100)]
Merge pull request #5779 from masterleinad/fix_periodic_dofs

Fix periodicity constraints for multiply constrained DoFs

6 years agoMerge pull request #5811 from bangerth/unpack-for-arrays
Timo Heister [Sun, 28 Jan 2018 18:41:56 +0000 (13:41 -0500)]
Merge pull request #5811 from bangerth/unpack-for-arrays

Add a variant of Utilities::unpack() for arrays.

6 years agoRemove subdomain_ids_parallel_08 5824/head
Daniel Arndt [Sun, 28 Jan 2018 18:21:47 +0000 (19:21 +0100)]
Remove subdomain_ids_parallel_08

6 years agomove implemetation of MPI::some_to_some 5823/head
benjamin [Sun, 28 Jan 2018 10:38:09 +0000 (11:38 +0100)]
move implemetation of MPI::some_to_some

6 years agoMerge pull request #5822 from bangerth/copyright
Denis Davydov [Sun, 28 Jan 2018 07:22:15 +0000 (08:22 +0100)]
Merge pull request #5822 from bangerth/copyright

Update copyright years.

6 years agoMerge pull request #5820 from BenBrands/move_all_gather
Denis Davydov [Sun, 28 Jan 2018 07:21:25 +0000 (08:21 +0100)]
Merge pull request #5820 from BenBrands/move_all_gather

Move implementation of MPI::all_gather()

6 years agoUpdate copyright years. 5822/head
Wolfgang Bangerth [Sun, 28 Jan 2018 03:01:01 +0000 (20:01 -0700)]
Update copyright years.

6 years agoMerge pull request #5817 from drwells/cppcheck-4
Wolfgang Bangerth [Sun, 28 Jan 2018 02:17:16 +0000 (19:17 -0700)]
Merge pull request #5817 from drwells/cppcheck-4

Fix some things cppcheck found.

6 years agoMerge pull request #5821 from masterleinad/fix_utilities_pack_unpack_03
Wolfgang Bangerth [Sun, 28 Jan 2018 02:14:19 +0000 (19:14 -0700)]
Merge pull request #5821 from masterleinad/fix_utilities_pack_unpack_03

Fix utilities_pack_unpack_03

6 years agoMerge pull request #5809 from bangerth/pointers
Daniel Arndt [Sat, 27 Jan 2018 23:51:39 +0000 (00:51 +0100)]
Merge pull request #5809 from bangerth/pointers

Specialize ArrayViewHelper::is_contiguous() for pointers.

6 years agoFix utilities_pack_unpack_03 5821/head
Daniel Arndt [Sat, 27 Jan 2018 23:27:20 +0000 (00:27 +0100)]
Fix utilities_pack_unpack_03

6 years agoUse nullptr for the null pointer. 5817/head
David Wells [Sat, 27 Jan 2018 18:19:53 +0000 (13:19 -0500)]
Use nullptr for the null pointer.

6 years agoUse constant references instead of copies.
David Wells [Sat, 27 Jan 2018 18:25:16 +0000 (13:25 -0500)]
Use constant references instead of copies.

This was found by cppcheck.

6 years agoReduce the scope of some variables.
David Wells [Sat, 27 Jan 2018 18:24:47 +0000 (13:24 -0500)]
Reduce the scope of some variables.

This was found by cppcheck.

6 years agoFix initialization of protected/private solver members.
David Wells [Sat, 27 Jan 2018 18:23:39 +0000 (13:23 -0500)]
Fix initialization of protected/private solver members.

This was found by cppcheck.

6 years agoMove implementation of MPI::all_gather() 5820/head
benjamin [Sat, 27 Jan 2018 21:25:55 +0000 (22:25 +0100)]
Move implementation of MPI::all_gather()

6 years agoImprove tolerances for errors near zero. 5819/head
David Wells [Sat, 27 Jan 2018 20:39:32 +0000 (15:39 -0500)]
Improve tolerances for errors near zero.

Details in the floating point implementation (e.g., whether or not -ffast-math
is used) can change the error by an order of magnitude or more. Get around this
by, in each relevant case, bounding the error above.

Since the errors are now checked in a different way the alternative output file
has been removed.

6 years agoMerge pull request #5816 from jppelteret/fix_5763
Wolfgang Bangerth [Sat, 27 Jan 2018 19:56:58 +0000 (12:56 -0700)]
Merge pull request #5816 from jppelteret/fix_5763

Ensure parallel::Tria can't be used with DoFRenumbering::subdomain_wise

6 years agoMerge pull request #5784 from BenBrands/utilities_mpi_gather
Wolfgang Bangerth [Sat, 27 Jan 2018 19:51:31 +0000 (12:51 -0700)]
Merge pull request #5784 from BenBrands/utilities_mpi_gather

Add Utilities::MPI::gather


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